Wall clock time and date at job start Tue Mar 31 2020 15:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38252 * 119.99749 * 2 1 4 4 C 1.38216 * 119.99847 * 180.02562 * 3 2 1 5 5 C 1.38262 * 119.99868 * 359.95515 * 4 3 2 6 6 N 1.48022 * 120.00039 * 180.02562 * 5 4 3 7 7 O 1.21805 * 119.99848 * 351.08160 * 6 5 4 8 8 O 1.21801 * 119.99759 * 171.07820 * 6 5 4 9 9 C 1.38217 * 119.99857 * 0.02562 * 5 4 3 10 10 S 1.76196 * 119.99856 * 179.97438 * 9 5 4 11 11 O 1.42098 * 106.40340 * 181.92248 * 10 9 5 12 12 O 1.42107 * 106.40372 * 314.84036 * 10 9 5 13 13 N 1.65601 * 107.22067 * 68.37860 * 10 9 5 14 14 C 1.46496 * 119.99895 * 64.99986 * 13 10 9 15 15 H 1.09005 * 109.46980 * 335.00107 * 14 13 10 16 16 C 1.52998 * 109.47468 * 95.00045 * 14 13 10 17 17 C 1.50700 * 109.47315 * 215.00246 * 14 13 10 18 18 H 1.07999 * 120.00234 * 359.97438 * 17 14 13 19 19 C 1.37878 * 120.00381 * 180.02562 * 17 14 13 20 20 N 1.31515 * 119.99691 * 359.97438 * 19 17 14 21 21 Si 1.86796 * 120.00491 * 179.97438 * 19 17 14 22 22 H 1.48507 * 109.46917 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47469 * 119.99681 * 21 19 17 24 24 H 1.48493 * 109.47514 * 240.00236 * 21 19 17 25 25 C 1.38204 * 119.99769 * 179.72464 * 2 1 3 26 26 C 1.50705 * 120.00310 * 0.02562 * 25 2 1 27 27 H 1.08995 * 109.47032 * 89.99805 * 1 2 3 28 28 H 1.08998 * 109.46886 * 330.00267 * 1 2 3 29 29 H 1.08997 * 109.47514 * 210.00354 * 1 2 3 30 30 H 1.07998 * 120.00616 * 359.97438 * 3 2 1 31 31 H 1.07997 * 120.00378 * 179.97438 * 4 3 2 32 32 H 0.97003 * 120.00237 * 245.00099 * 13 10 9 33 33 H 1.09004 * 109.47047 * 300.00352 * 16 14 13 34 34 H 1.09005 * 109.46970 * 60.00056 * 16 14 13 35 35 H 1.08998 * 109.47485 * 180.02562 * 16 14 13 36 36 H 0.97004 * 120.00235 * 179.97438 * 20 19 17 37 37 H 1.08996 * 109.47163 * 99.14105 * 26 25 2 38 38 H 1.09001 * 109.47012 * 219.14302 * 26 25 2 39 39 H 1.08999 * 109.46643 * 339.13438 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0000 -0.0001 6 7 5.7519 -0.0001 -0.0001 7 8 6.3610 1.0420 -0.1640 8 8 6.3609 -1.0421 0.1638 9 6 3.5806 -1.1970 0.0003 10 16 4.4616 -2.7229 0.0001 11 8 3.4823 -3.7516 -0.0451 12 8 5.4943 -2.5899 -0.9669 13 7 5.2120 -2.8559 1.4703 14 6 4.4130 -2.9764 2.6923 15 1 3.4312 -2.5317 2.5297 16 6 4.2502 -4.4546 3.0516 17 6 5.1088 -2.2590 3.8202 18 1 6.0521 -1.7633 3.6446 19 6 4.5418 -2.2363 5.0768 20 7 3.3933 -2.8404 5.2909 21 14 5.4046 -1.3477 6.4751 22 1 6.6719 -0.7547 5.9775 23 1 4.5243 -0.2707 6.9952 24 1 5.7039 -2.3116 7.5643 25 6 2.1980 -1.1969 0.0058 26 6 1.4445 -2.5020 0.0114 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 0.8900 0.5138 29 1 -0.3634 -0.8899 0.5139 30 1 1.6583 2.1326 -0.0004 31 1 4.1205 2.1326 -0.0010 32 1 6.1806 -2.8541 1.5224 33 1 3.7469 -4.9735 2.2357 34 1 5.2320 -4.8993 3.2142 35 1 3.6553 -4.5443 3.9605 36 1 2.9945 -2.8248 6.1750 37 1 1.4046 -2.9030 -1.0013 38 1 1.9529 -3.2122 0.6636 39 1 0.4311 -2.3348 0.3763 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178320649.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:38 Heat of formation + Delta-G solvation = -32.625381 kcal Electronic energy + Delta-G solvation = -27906.557965 eV Core-core repulsion = 23945.660692 eV Total energy + Delta-G solvation = -3960.897273 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.05060 -39.89705 -37.06645 -36.29857 -35.44655 -35.38518 -33.94839 -32.73329 -32.22333 -28.81554 -28.28920 -27.34194 -25.25729 -25.05481 -23.23484 -21.50021 -20.92842 -19.30944 -18.65297 -18.44406 -17.50559 -17.35409 -16.80463 -16.44886 -16.03291 -15.27228 -15.07186 -14.62081 -14.48725 -13.91827 -13.60334 -13.11459 -13.01004 -12.80507 -12.66680 -12.53354 -12.38628 -12.22224 -11.84332 -11.71499 -11.61716 -11.29828 -11.21280 -11.07727 -11.03280 -10.96642 -10.58584 -10.46622 -10.33835 -10.21815 -10.10717 -9.66842 -9.23078 -9.12001 -8.66433 -8.31733 -6.19197 -4.26671 -0.24528 0.60007 0.88159 1.44007 1.49952 2.98824 3.19540 3.28432 3.33397 3.59001 4.05216 4.23290 4.30515 4.32037 4.56997 4.61126 4.77355 5.02425 5.12762 5.19162 5.24756 5.35510 5.41926 5.47949 5.63526 5.77981 5.83454 6.04883 6.18905 6.28957 6.55820 6.61187 6.80680 6.99449 7.04480 7.54593 7.67647 7.74191 7.94416 7.99529 8.26841 8.78571 9.40284 10.86321 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.010922 B = 0.006118 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.905876 B = 4575.777214 C = 4708.942296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.064 4.064 3 C -0.073 4.073 4 C -0.077 4.077 5 C 0.050 3.950 6 N 0.018 4.982 7 O -0.162 6.162 8 O -0.117 6.117 9 C -0.623 4.623 10 S 2.687 3.313 11 O -0.953 6.953 12 O -0.956 6.956 13 N -1.081 6.081 14 C 0.273 3.727 15 H 0.035 0.965 16 C -0.157 4.157 17 C -0.525 4.525 18 H 0.066 0.934 19 C 0.065 3.935 20 N -0.887 5.887 21 Si 0.896 3.104 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.281 1.281 25 C 0.027 3.973 26 C -0.161 4.161 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.150 0.850 31 H 0.157 0.843 32 H 0.419 0.581 33 H 0.026 0.974 34 H 0.035 0.965 35 H 0.092 0.908 36 H 0.263 0.737 37 H 0.090 0.910 38 H 0.132 0.868 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.235 5.989 -9.828 13.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.065 4.065 3 C -0.092 4.092 4 C -0.097 4.097 5 C -0.033 4.033 6 N 0.538 4.462 7 O -0.374 6.374 8 O -0.338 6.338 9 C -0.705 4.705 10 S 2.770 3.230 11 O -0.942 6.942 12 O -0.946 6.946 13 N -0.846 5.846 14 C 0.168 3.832 15 H 0.052 0.948 16 C -0.217 4.217 17 C -0.564 4.564 18 H 0.084 0.916 19 C -0.138 4.138 20 N -0.525 5.525 21 Si 0.724 3.276 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.207 1.207 25 C 0.025 3.975 26 C -0.217 4.217 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.167 0.833 31 H 0.174 0.826 32 H 0.255 0.745 33 H 0.045 0.955 34 H 0.054 0.946 35 H 0.110 0.890 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.150 0.850 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.277 5.457 -10.388 14.360 hybrid contribution 0.986 1.483 1.234 2.167 sum -7.291 6.940 -9.154 13.606 Atomic orbital electron populations 1.21028 0.89346 1.04409 1.03295 1.20356 0.97547 0.92452 0.96133 1.21253 0.92534 0.98753 0.96649 1.21046 0.94843 0.97002 0.96779 1.20430 0.79462 0.95701 1.07747 1.43594 1.03166 1.00699 0.98778 1.94483 1.68551 1.21301 1.53094 1.94546 1.68733 1.20067 1.50458 1.31140 1.06248 1.20761 1.12306 1.02305 0.72989 0.73696 0.74010 1.93544 1.60923 1.53163 1.86606 1.93605 1.54798 1.86169 1.60034 1.55532 1.18276 1.88242 1.22539 1.18551 0.89853 0.94119 0.80637 0.94751 1.22231 1.00635 0.96782 1.02044 1.21373 1.07628 1.33797 0.93646 0.91600 1.24904 0.94962 0.95332 0.98582 1.69881 1.17160 1.42776 1.22697 0.86458 0.79777 0.79426 0.81939 1.19558 1.21043 1.20687 1.19676 0.90002 0.97302 0.90552 1.21884 1.00718 0.93146 1.05960 0.89993 0.90567 0.89597 0.83250 0.82573 0.74482 0.95505 0.94590 0.88970 0.92654 0.89203 0.85048 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 9.59 36.01 0.35 -0.68 16 2 C -0.06 -0.78 5.88 -104.63 -0.62 -1.39 16 3 C -0.07 -0.82 9.70 -39.58 -0.38 -1.20 16 4 C -0.08 -1.06 9.56 -39.58 -0.38 -1.44 16 5 C 0.05 0.88 6.78 -79.94 -0.54 0.34 16 6 N 0.02 0.35 4.42 33.96 0.15 0.50 16 7 O -0.16 -3.04 18.48 -29.46 -0.54 -3.59 16 8 O -0.12 -2.46 11.95 -37.46 -0.45 -2.91 16 9 C -0.62 -11.15 5.75 -39.58 -0.23 -11.38 16 10 S 2.69 52.57 4.78 -107.50 -0.51 52.06 16 11 O -0.95 -18.64 12.62 -57.17 -0.72 -19.36 16 12 O -0.96 -20.30 14.80 -67.45 -1.00 -21.30 16 13 N -1.08 -22.71 4.48 -5.88 -0.03 -22.74 16 14 C 0.27 6.46 2.76 -69.09 -0.19 6.27 16 15 H 0.03 0.85 7.85 -51.93 -0.41 0.44 16 16 C -0.16 -3.66 9.29 37.16 0.35 -3.32 16 17 C -0.52 -13.64 8.76 -34.44 -0.30 -13.94 16 18 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 19 C 0.07 1.70 5.30 -17.82 -0.09 1.61 16 20 N -0.89 -23.66 11.32 55.43 0.63 -23.03 16 21 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 C 0.03 0.41 5.88 -104.62 -0.62 -0.21 16 26 C -0.16 -2.27 8.13 36.01 0.29 -1.97 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.50 8.09 -51.93 -0.42 0.08 16 29 H 0.09 0.70 5.87 -51.93 -0.30 0.40 16 30 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.16 1.78 7.64 -52.49 -0.40 1.38 16 32 H 0.42 8.45 7.80 -34.47 -0.27 8.18 16 33 H 0.03 0.57 7.64 -51.93 -0.40 0.17 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 36 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 37 H 0.09 1.14 8.03 -51.93 -0.42 0.72 16 38 H 0.13 2.22 5.39 -52.29 -0.28 1.94 16 39 H 0.08 0.86 5.63 -51.93 -0.29 0.57 16 LS Contribution 331.55 15.07 5.00 5.00 Total: -1.00 -31.22 331.55 -9.18 -40.40 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -4.32 Total: 6.76 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: -2.37 Total: -27.32 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.75 Total: -45.27 kcal Atomic # 8 Polarization: -44.44 SS G_CDS: -2.71 Total: -47.15 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 52.57 SS G_CDS: -0.51 Total: 52.06 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.22 -9.18 -40.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178320649.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.773 kcal (2) G-P(sol) polarization free energy of solvation -31.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds