Wall clock time and date at job start Tue Mar 31 2020 15:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38252 * 119.99749 * 2 1 4 4 C 1.38216 * 119.99847 * 180.02562 * 3 2 1 5 5 C 1.38262 * 119.99868 * 359.95515 * 4 3 2 6 6 N 1.48022 * 120.00039 * 180.02562 * 5 4 3 7 7 O 1.21805 * 119.99848 * 351.08160 * 6 5 4 8 8 O 1.21801 * 119.99759 * 171.07820 * 6 5 4 9 9 C 1.38217 * 119.99857 * 0.02562 * 5 4 3 10 10 S 1.76196 * 119.99856 * 179.97438 * 9 5 4 11 11 O 1.42098 * 106.40340 * 181.92248 * 10 9 5 12 12 O 1.42107 * 106.40372 * 314.84036 * 10 9 5 13 13 N 1.65601 * 107.22067 * 68.37860 * 10 9 5 14 14 C 1.46496 * 119.99895 * 64.99986 * 13 10 9 15 15 H 1.09005 * 109.46980 * 335.00107 * 14 13 10 16 16 C 1.52998 * 109.47468 * 95.00045 * 14 13 10 17 17 C 1.50700 * 109.47315 * 215.00246 * 14 13 10 18 18 H 1.07999 * 120.00234 * 359.97438 * 17 14 13 19 19 C 1.37878 * 120.00381 * 180.02562 * 17 14 13 20 20 N 1.31515 * 119.99691 * 359.97438 * 19 17 14 21 21 Si 1.86796 * 120.00491 * 179.97438 * 19 17 14 22 22 H 1.48507 * 109.46917 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47469 * 119.99681 * 21 19 17 24 24 H 1.48493 * 109.47514 * 240.00236 * 21 19 17 25 25 C 1.38204 * 119.99769 * 179.72464 * 2 1 3 26 26 C 1.50705 * 120.00310 * 0.02562 * 25 2 1 27 27 H 1.08995 * 109.47032 * 89.99805 * 1 2 3 28 28 H 1.08998 * 109.46886 * 330.00267 * 1 2 3 29 29 H 1.08997 * 109.47514 * 210.00354 * 1 2 3 30 30 H 1.07998 * 120.00616 * 359.97438 * 3 2 1 31 31 H 1.07997 * 120.00378 * 179.97438 * 4 3 2 32 32 H 0.97003 * 120.00237 * 245.00099 * 13 10 9 33 33 H 1.09004 * 109.47047 * 300.00352 * 16 14 13 34 34 H 1.09005 * 109.46970 * 60.00056 * 16 14 13 35 35 H 1.08998 * 109.47485 * 180.02562 * 16 14 13 36 36 H 0.97004 * 120.00235 * 179.97438 * 20 19 17 37 37 H 1.08996 * 109.47163 * 99.14105 * 26 25 2 38 38 H 1.09001 * 109.47012 * 219.14302 * 26 25 2 39 39 H 1.08999 * 109.46643 * 339.13438 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0000 -0.0001 6 7 5.7519 -0.0001 -0.0001 7 8 6.3610 1.0420 -0.1640 8 8 6.3609 -1.0421 0.1638 9 6 3.5806 -1.1970 0.0003 10 16 4.4616 -2.7229 0.0001 11 8 3.4823 -3.7516 -0.0451 12 8 5.4943 -2.5899 -0.9669 13 7 5.2120 -2.8559 1.4703 14 6 4.4130 -2.9764 2.6923 15 1 3.4312 -2.5317 2.5297 16 6 4.2502 -4.4546 3.0516 17 6 5.1088 -2.2590 3.8202 18 1 6.0521 -1.7633 3.6446 19 6 4.5418 -2.2363 5.0768 20 7 3.3933 -2.8404 5.2909 21 14 5.4046 -1.3477 6.4751 22 1 6.6719 -0.7547 5.9775 23 1 4.5243 -0.2707 6.9952 24 1 5.7039 -2.3116 7.5643 25 6 2.1980 -1.1969 0.0058 26 6 1.4445 -2.5020 0.0114 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 0.8900 0.5138 29 1 -0.3634 -0.8899 0.5139 30 1 1.6583 2.1326 -0.0004 31 1 4.1205 2.1326 -0.0010 32 1 6.1806 -2.8541 1.5224 33 1 3.7469 -4.9735 2.2357 34 1 5.2320 -4.8993 3.2142 35 1 3.6553 -4.5443 3.9605 36 1 2.9945 -2.8248 6.1750 37 1 1.4046 -2.9030 -1.0013 38 1 1.9529 -3.2122 0.6636 39 1 0.4311 -2.3348 0.3763 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178320649.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:37 Heat of formation + Delta-G solvation = -52.415013 kcal Electronic energy + Delta-G solvation = -27907.416108 eV Core-core repulsion = 23945.660692 eV Total energy + Delta-G solvation = -3961.755416 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.44947 -40.99215 -38.59957 -37.79634 -37.20427 -36.98391 -35.01628 -34.14664 -33.80278 -30.14018 -29.80389 -28.50928 -27.26359 -26.16947 -24.36448 -22.93864 -22.55814 -20.73006 -20.08296 -19.84513 -19.17575 -18.79547 -18.14449 -17.96837 -17.47947 -17.01966 -16.29176 -15.98621 -15.55599 -15.27866 -15.04052 -14.57599 -14.29832 -14.09927 -13.91627 -13.75258 -13.54648 -13.47521 -13.38968 -13.14760 -13.05904 -12.96802 -12.88136 -12.71768 -12.45183 -12.38669 -12.24827 -12.20845 -12.06529 -11.92640 -11.46079 -11.14366 -10.74168 -10.61672 -10.20241 -10.09863 -8.18726 -6.32304 -1.53216 -0.66126 -0.43404 0.15129 0.21223 1.37285 1.41605 1.51872 1.87651 2.09109 2.40600 2.61573 3.01823 3.10026 3.34312 3.55090 3.66224 3.71930 3.81062 4.10821 4.33191 4.45659 4.53906 4.54971 4.63922 4.74315 4.81837 4.90828 4.99517 5.08339 5.10388 5.15096 5.18577 5.30972 5.53812 5.57912 5.74220 5.99801 6.07649 6.30426 6.47306 6.78471 7.37143 8.86358 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.010922 B = 0.006118 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.905876 B = 4575.777214 C = 4708.942296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.053 4.053 3 C -0.057 4.057 4 C -0.071 4.071 5 C 0.013 3.987 6 N 0.016 4.984 7 O -0.142 6.142 8 O -0.177 6.177 9 C -0.649 4.649 10 S 2.697 3.303 11 O -0.962 6.962 12 O -0.980 6.980 13 N -1.088 6.088 14 C 0.281 3.719 15 H 0.023 0.977 16 C -0.150 4.150 17 C -0.542 4.542 18 H 0.056 0.944 19 C 0.026 3.974 20 N -0.906 5.906 21 Si 0.953 3.047 22 H -0.275 1.275 23 H -0.277 1.277 24 H -0.276 1.276 25 C 0.012 3.988 26 C -0.165 4.165 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.205 0.795 31 H 0.181 0.819 32 H 0.418 0.582 33 H 0.036 0.964 34 H 0.035 0.965 35 H 0.075 0.925 36 H 0.267 0.733 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.819 8.682 -9.910 16.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.054 4.054 3 C -0.075 4.075 4 C -0.090 4.090 5 C -0.071 4.071 6 N 0.531 4.469 7 O -0.363 6.363 8 O -0.384 6.384 9 C -0.735 4.735 10 S 2.785 3.215 11 O -0.952 6.952 12 O -0.970 6.970 13 N -0.850 5.850 14 C 0.176 3.824 15 H 0.040 0.960 16 C -0.210 4.210 17 C -0.582 4.582 18 H 0.074 0.926 19 C -0.175 4.175 20 N -0.545 5.545 21 Si 0.779 3.221 22 H -0.200 1.200 23 H -0.203 1.203 24 H -0.201 1.201 25 C 0.010 3.990 26 C -0.221 4.221 27 H 0.126 0.874 28 H 0.121 0.879 29 H 0.104 0.896 30 H 0.222 0.778 31 H 0.199 0.801 32 H 0.254 0.746 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.811 7.989 -10.454 17.029 hybrid contribution 1.608 0.826 1.179 2.158 sum -9.203 8.814 -9.275 15.761 Atomic orbital electron populations 1.21218 0.85955 1.05752 1.05257 1.20927 0.99846 0.91391 0.93237 1.21939 0.91344 1.00609 0.93616 1.21599 0.96227 0.96342 0.94879 1.20723 0.77835 0.97268 1.11244 1.43970 1.04415 1.00347 0.98158 1.94414 1.69432 1.21043 1.51380 1.94549 1.69702 1.20526 1.53665 1.30697 1.07448 1.19502 1.15833 1.01649 0.72604 0.74165 0.73092 1.93551 1.60547 1.54609 1.86501 1.93568 1.56172 1.86901 1.60371 1.55428 1.18160 1.89058 1.22354 1.18273 0.89384 0.93714 0.81069 0.95951 1.22130 1.00377 0.96982 1.01527 1.21580 1.07537 1.34266 0.94782 0.92604 1.25553 0.95579 0.95952 1.00444 1.69966 1.17915 1.43295 1.23311 0.85587 0.78650 0.78556 0.79352 1.19960 1.20283 1.20130 1.20012 0.89078 0.99198 0.90705 1.21896 1.01981 0.92251 1.05984 0.87410 0.87870 0.89640 0.77770 0.80126 0.74605 0.94546 0.94557 0.90661 0.92343 0.88242 0.88290 0.87109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 9.59 71.24 0.68 -0.70 16 2 C -0.05 -1.07 5.88 -19.87 -0.12 -1.18 16 3 C -0.06 -0.99 9.70 22.27 0.22 -0.77 16 4 C -0.07 -1.74 9.56 22.27 0.21 -1.53 16 5 C 0.01 0.44 6.78 36.38 0.25 0.69 16 6 N 0.02 0.65 4.42 -46.46 -0.21 0.44 16 7 O -0.14 -5.32 18.48 18.88 0.35 -4.97 16 8 O -0.18 -7.91 11.95 26.53 0.32 -7.59 16 9 C -0.65 -23.42 5.75 22.27 0.13 -23.30 16 10 S 2.70 110.90 4.78 -56.49 -0.27 110.63 16 11 O -0.96 -39.32 12.62 -128.00 -1.61 -40.93 16 12 O -0.98 -44.19 14.80 -118.18 -1.75 -45.94 16 13 N -1.09 -48.34 4.48 -172.53 -0.77 -49.11 16 14 C 0.28 13.80 2.76 44.25 0.12 13.93 16 15 H 0.02 1.16 7.85 -2.38 -0.02 1.14 16 16 C -0.15 -7.25 9.29 71.98 0.67 -6.58 16 17 C -0.54 -28.91 8.76 25.60 0.22 -28.68 16 18 H 0.06 3.02 7.81 -2.91 -0.02 3.00 16 19 C 0.03 1.35 5.30 84.65 0.45 1.80 16 20 N -0.91 -48.60 11.32 21.45 0.24 -48.36 16 21 Si 0.95 42.15 29.54 68.60 2.03 44.18 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 25 C 0.01 0.36 5.88 -19.87 -0.12 0.24 16 26 C -0.17 -4.49 8.13 71.24 0.58 -3.91 16 27 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.10 0.67 8.09 -2.39 -0.02 0.65 16 29 H 0.09 1.00 5.87 -2.39 -0.01 0.99 16 30 H 0.21 1.31 8.06 -2.91 -0.02 1.29 16 31 H 0.18 3.44 7.64 -2.91 -0.02 3.41 16 32 H 0.42 18.24 7.80 -96.74 -0.75 17.49 16 33 H 0.04 1.62 7.64 -2.38 -0.02 1.60 16 34 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.07 3.88 6.07 -2.39 -0.01 3.86 16 36 H 0.27 13.51 8.31 -92.70 -0.77 12.74 16 37 H 0.10 2.44 8.03 -2.39 -0.02 2.42 16 38 H 0.10 3.43 5.39 -8.15 -0.04 3.38 16 39 H 0.11 2.18 5.63 -2.39 -0.01 2.17 16 Total: -1.00 -70.97 331.55 1.95 -69.02 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: 0.33 Total: 22.62 kcal Atomic # 6 Polarization: -53.29 SS G_CDS: 3.30 Total: -49.99 kcal Atomic # 7 Polarization: -96.29 SS G_CDS: -0.74 Total: -97.02 kcal Atomic # 8 Polarization: -96.73 SS G_CDS: -2.70 Total: -99.43 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Atomic # 16 Polarization: 110.90 SS G_CDS: -0.27 Total: 110.63 kcal Total: -70.97 1.95 -69.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178320649.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.607 kcal (2) G-P(sol) polarization free energy of solvation -70.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds