Wall clock time and date at job start Tue Mar 31 2020 15:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38254 * 120.00376 * 2 1 4 4 C 1.38213 * 120.00135 * 179.72453 * 3 2 1 5 5 C 1.38251 * 120.00265 * 359.94966 * 4 3 2 6 6 N 1.48015 * 120.00368 * 179.97438 * 5 4 3 7 7 O 1.21795 * 119.99957 * 350.79697 * 6 5 4 8 8 O 1.21801 * 120.00378 * 170.79172 * 6 5 4 9 9 C 1.38215 * 119.99608 * 0.02756 * 5 4 3 10 10 S 1.76202 * 119.99776 * 179.97438 * 9 5 4 11 11 O 1.42105 * 106.40185 * 182.22275 * 10 9 5 12 12 O 1.42100 * 106.40444 * 315.14917 * 10 9 5 13 13 N 1.65609 * 107.21694 * 68.68923 * 10 9 5 14 14 C 1.46489 * 120.00150 * 65.08105 * 13 10 9 15 15 H 1.08998 * 109.47341 * 22.00701 * 14 13 10 16 16 C 1.53005 * 109.47389 * 262.00638 * 14 13 10 17 17 C 1.50706 * 109.47082 * 142.00781 * 14 13 10 18 18 H 1.07997 * 119.99720 * 359.97438 * 17 14 13 19 19 C 1.37875 * 119.99862 * 180.02562 * 17 14 13 20 20 N 1.31512 * 120.00043 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 119.99836 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.47530 * 59.99559 * 21 19 17 23 23 H 1.48501 * 109.47060 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46858 * 299.99472 * 21 19 17 25 25 C 1.38214 * 119.99707 * 179.71954 * 2 1 3 26 26 C 1.50698 * 120.00137 * 0.26199 * 25 2 1 27 27 H 1.09005 * 109.47371 * 89.99755 * 1 2 3 28 28 H 1.08994 * 109.47402 * 210.00277 * 1 2 3 29 29 H 1.09002 * 109.46862 * 330.00336 * 1 2 3 30 30 H 1.07999 * 119.99797 * 359.69285 * 3 2 1 31 31 H 1.08008 * 119.99982 * 179.97438 * 4 3 2 32 32 H 0.97000 * 119.99521 * 245.08045 * 13 10 9 33 33 H 1.08998 * 109.46930 * 300.00315 * 16 14 13 34 34 H 1.09003 * 109.46628 * 60.00271 * 16 14 13 35 35 H 1.08994 * 109.47348 * 180.02562 * 16 14 13 36 36 H 0.97005 * 120.00236 * 180.02562 * 20 19 17 37 37 H 1.08998 * 109.47868 * 99.02008 * 26 25 2 38 38 H 1.09002 * 109.47140 * 219.02046 * 26 25 2 39 39 H 1.09004 * 109.47035 * 339.01968 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 0.0058 5 6 4.2717 -0.0001 0.0126 6 7 5.7518 -0.0001 0.0182 7 8 6.3615 1.0404 -0.1519 8 8 6.3602 -1.0408 0.1929 9 6 3.5805 -1.1970 0.0130 10 16 4.4615 -2.7229 0.0210 11 8 3.4826 -3.7517 -0.0330 12 8 5.5031 -2.5900 -0.9364 13 7 5.1982 -2.8559 1.4982 14 6 4.3880 -2.9781 2.7125 15 1 3.3968 -3.3493 2.4522 16 6 4.2600 -1.6074 3.3804 17 6 5.0510 -3.9405 3.6640 18 1 5.9825 -4.4141 3.3912 19 6 4.4678 -4.2172 4.8823 20 7 3.3332 -3.6409 5.2143 21 14 5.2899 -5.4096 6.0620 22 1 6.6398 -4.9031 6.4173 23 1 4.4685 -5.5336 7.2930 24 1 5.4151 -6.7398 5.4139 25 6 2.1980 -1.1970 0.0059 26 6 1.4444 -2.5021 0.0063 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6583 2.1326 -0.0050 31 1 4.1205 2.1326 0.0053 32 1 6.1663 -2.8528 1.5593 33 1 5.2512 -1.2362 3.6408 34 1 3.7805 -0.9114 2.6922 35 1 3.6576 -1.6984 4.2841 36 1 2.9231 -3.8352 6.0716 37 1 1.4063 -2.9000 -1.0077 38 1 1.9517 -3.2142 0.6572 39 1 0.4303 -2.3360 0.3698 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178320663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:42 Heat of formation + Delta-G solvation = -31.131181 kcal Electronic energy + Delta-G solvation = -27877.333500 eV Core-core repulsion = 23916.501020 eV Total energy + Delta-G solvation = -3960.832480 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.12683 -39.96061 -37.08133 -36.35078 -35.48932 -35.38440 -33.99788 -32.77894 -32.20088 -28.86526 -28.35444 -27.39835 -25.30827 -25.09898 -23.26030 -21.55162 -20.96187 -19.32064 -18.69587 -18.50449 -17.52472 -17.40872 -16.95244 -16.39545 -16.01863 -15.28125 -15.12453 -14.61681 -14.51964 -13.96449 -13.64290 -13.14336 -13.04601 -12.84051 -12.69924 -12.58562 -12.39687 -12.25541 -11.91209 -11.75924 -11.59199 -11.31089 -11.28337 -11.12732 -11.04364 -10.97262 -10.68287 -10.50661 -10.41160 -10.22540 -10.08522 -9.71629 -9.29198 -9.17596 -8.63811 -8.32400 -6.16187 -4.22592 -0.31313 0.54453 0.85342 1.36737 1.42749 2.92815 3.28196 3.31815 3.35314 3.59363 4.02437 4.19814 4.26111 4.35276 4.51602 4.56142 4.72133 4.98982 5.14771 5.17310 5.21057 5.31033 5.38639 5.42354 5.60156 5.75314 5.80584 6.00694 6.14655 6.26987 6.48288 6.58955 6.67165 6.72427 6.91029 7.50845 7.59702 7.70724 7.90319 7.98931 8.24994 8.80642 9.43497 10.90168 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.013469 B = 0.005517 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.295924 B = 5073.882517 C = 5703.943570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.063 4.063 3 C -0.074 4.074 4 C -0.077 4.077 5 C 0.046 3.954 6 N 0.017 4.983 7 O -0.162 6.162 8 O -0.118 6.118 9 C -0.623 4.623 10 S 2.685 3.315 11 O -0.950 6.950 12 O -0.955 6.955 13 N -1.080 6.080 14 C 0.268 3.732 15 H 0.050 0.950 16 C -0.157 4.157 17 C -0.518 4.518 18 H 0.067 0.933 19 C 0.064 3.936 20 N -0.892 5.892 21 Si 0.903 3.097 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.028 3.972 26 C -0.163 4.163 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.150 0.850 31 H 0.156 0.844 32 H 0.419 0.581 33 H 0.035 0.965 34 H 0.001 0.999 35 H 0.096 0.904 36 H 0.265 0.735 37 H 0.090 0.910 38 H 0.134 0.866 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.083 9.507 -9.362 15.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.063 4.063 3 C -0.093 4.093 4 C -0.097 4.097 5 C -0.037 4.037 6 N 0.536 4.464 7 O -0.374 6.374 8 O -0.338 6.338 9 C -0.704 4.704 10 S 2.768 3.232 11 O -0.939 6.939 12 O -0.945 6.945 13 N -0.844 5.844 14 C 0.163 3.837 15 H 0.067 0.933 16 C -0.216 4.216 17 C -0.558 4.558 18 H 0.085 0.915 19 C -0.139 4.139 20 N -0.530 5.530 21 Si 0.730 3.270 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.200 1.200 25 C 0.026 3.974 26 C -0.219 4.219 27 H 0.101 0.899 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.167 0.833 31 H 0.174 0.826 32 H 0.255 0.745 33 H 0.054 0.946 34 H 0.020 0.980 35 H 0.115 0.885 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.151 0.849 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.126 9.015 -9.925 15.678 hybrid contribution 0.957 0.453 1.049 1.491 sum -7.169 9.467 -8.876 14.826 Atomic orbital electron populations 1.21037 0.89310 1.04427 1.03373 1.20374 0.97576 0.92422 0.95968 1.21254 0.92516 0.98760 0.96774 1.21041 0.94843 0.96960 0.96870 1.20426 0.79427 0.95691 1.08122 1.43624 1.03189 1.00693 0.98871 1.94484 1.68498 1.21391 1.53029 1.94563 1.68798 1.20067 1.50388 1.31218 1.06308 1.20845 1.12052 1.02356 0.73058 0.73680 0.74099 1.93550 1.60866 1.53021 1.86485 1.93606 1.54235 1.86143 1.60511 1.55485 1.18172 1.88141 1.22653 1.18630 0.90834 0.93561 0.80640 0.93265 1.22291 1.00570 0.96553 1.02211 1.21193 1.08763 1.25086 1.00711 0.91450 1.24909 0.94921 0.96196 0.97825 1.69840 1.17510 1.42890 1.22765 0.86480 0.79309 0.81370 0.79836 1.20105 1.21245 1.19993 1.19689 0.89982 0.97312 0.90433 1.21916 1.00762 0.93182 1.06085 0.89947 0.89537 0.90556 0.83253 0.82614 0.74479 0.94583 0.98007 0.88544 0.92560 0.89148 0.84882 0.90324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.96 9.58 36.00 0.35 -0.62 16 2 C -0.06 -0.71 5.88 -104.63 -0.62 -1.33 16 3 C -0.07 -0.77 9.70 -39.58 -0.38 -1.15 16 4 C -0.08 -0.99 9.56 -39.59 -0.38 -1.37 16 5 C 0.05 0.77 6.68 -79.95 -0.53 0.24 16 6 N 0.02 0.31 4.42 33.96 0.15 0.46 16 7 O -0.16 -2.88 18.48 -29.46 -0.54 -3.43 16 8 O -0.12 -2.38 11.97 -37.47 -0.45 -2.83 16 9 C -0.62 -10.73 5.04 -39.58 -0.20 -10.93 16 10 S 2.69 52.74 4.84 -107.50 -0.52 52.22 16 11 O -0.95 -19.28 12.70 -57.17 -0.73 -20.01 16 12 O -0.96 -20.29 14.78 -67.45 -1.00 -21.29 16 13 N -1.08 -22.70 4.48 -5.88 -0.03 -22.73 16 14 C 0.27 6.34 2.91 -69.08 -0.20 6.14 16 15 H 0.05 1.23 7.14 -51.93 -0.37 0.86 16 16 C -0.16 -3.58 9.29 37.16 0.35 -3.23 16 17 C -0.52 -13.49 8.78 -34.44 -0.30 -13.79 16 18 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 19 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 20 N -0.89 -23.82 11.32 55.43 0.63 -23.20 16 21 Si 0.90 20.51 29.54 -169.99 -5.02 15.48 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 23 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 C 0.03 0.41 5.88 -104.63 -0.62 -0.21 16 26 C -0.16 -2.29 8.14 36.00 0.29 -2.00 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.67 5.87 -51.93 -0.30 0.37 16 29 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 30 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.16 1.62 7.64 -52.48 -0.40 1.22 16 32 H 0.42 8.42 7.84 -34.47 -0.27 8.15 16 33 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.00 0.02 7.17 -51.93 -0.37 -0.35 16 35 H 0.10 2.39 6.07 -51.93 -0.32 2.07 16 36 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 37 H 0.09 1.15 8.05 -51.93 -0.42 0.73 16 38 H 0.13 2.29 5.00 -52.41 -0.26 2.03 16 39 H 0.08 0.86 5.63 -51.93 -0.29 0.57 16 LS Contribution 329.55 15.07 4.97 4.97 Total: -1.00 -31.18 329.55 -9.12 -40.30 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -4.24 Total: 6.71 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: -2.34 Total: -26.66 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.75 Total: -45.46 kcal Atomic # 8 Polarization: -44.84 SS G_CDS: -2.72 Total: -47.56 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 52.74 SS G_CDS: -0.52 Total: 52.22 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.18 -9.12 -40.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178320663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.174 kcal (2) G-P(sol) polarization free energy of solvation -31.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds