Wall clock time and date at job start Tue Mar 31 2020 15:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38254 * 120.00376 * 2 1 4 4 C 1.38213 * 120.00135 * 179.72453 * 3 2 1 5 5 C 1.38251 * 120.00265 * 359.94966 * 4 3 2 6 6 N 1.48015 * 120.00368 * 179.97438 * 5 4 3 7 7 O 1.21795 * 119.99957 * 350.79697 * 6 5 4 8 8 O 1.21801 * 120.00378 * 170.79172 * 6 5 4 9 9 C 1.38215 * 119.99608 * 0.02756 * 5 4 3 10 10 S 1.76202 * 119.99776 * 179.97438 * 9 5 4 11 11 O 1.42105 * 106.40185 * 182.22275 * 10 9 5 12 12 O 1.42100 * 106.40444 * 315.14917 * 10 9 5 13 13 N 1.65609 * 107.21694 * 68.68923 * 10 9 5 14 14 C 1.46489 * 120.00150 * 65.08105 * 13 10 9 15 15 H 1.08998 * 109.47341 * 22.00701 * 14 13 10 16 16 C 1.53005 * 109.47389 * 262.00638 * 14 13 10 17 17 C 1.50706 * 109.47082 * 142.00781 * 14 13 10 18 18 H 1.07997 * 119.99720 * 359.97438 * 17 14 13 19 19 C 1.37875 * 119.99862 * 180.02562 * 17 14 13 20 20 N 1.31512 * 120.00043 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 119.99836 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.47530 * 59.99559 * 21 19 17 23 23 H 1.48501 * 109.47060 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46858 * 299.99472 * 21 19 17 25 25 C 1.38214 * 119.99707 * 179.71954 * 2 1 3 26 26 C 1.50698 * 120.00137 * 0.26199 * 25 2 1 27 27 H 1.09005 * 109.47371 * 89.99755 * 1 2 3 28 28 H 1.08994 * 109.47402 * 210.00277 * 1 2 3 29 29 H 1.09002 * 109.46862 * 330.00336 * 1 2 3 30 30 H 1.07999 * 119.99797 * 359.69285 * 3 2 1 31 31 H 1.08008 * 119.99982 * 179.97438 * 4 3 2 32 32 H 0.97000 * 119.99521 * 245.08045 * 13 10 9 33 33 H 1.08998 * 109.46930 * 300.00315 * 16 14 13 34 34 H 1.09003 * 109.46628 * 60.00271 * 16 14 13 35 35 H 1.08994 * 109.47348 * 180.02562 * 16 14 13 36 36 H 0.97005 * 120.00236 * 180.02562 * 20 19 17 37 37 H 1.08998 * 109.47868 * 99.02008 * 26 25 2 38 38 H 1.09002 * 109.47140 * 219.02046 * 26 25 2 39 39 H 1.09004 * 109.47035 * 339.01968 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 0.0058 5 6 4.2717 -0.0001 0.0126 6 7 5.7518 -0.0001 0.0182 7 8 6.3615 1.0404 -0.1519 8 8 6.3602 -1.0408 0.1929 9 6 3.5805 -1.1970 0.0130 10 16 4.4615 -2.7229 0.0210 11 8 3.4826 -3.7517 -0.0330 12 8 5.5031 -2.5900 -0.9364 13 7 5.1982 -2.8559 1.4982 14 6 4.3880 -2.9781 2.7125 15 1 3.3968 -3.3493 2.4522 16 6 4.2600 -1.6074 3.3804 17 6 5.0510 -3.9405 3.6640 18 1 5.9825 -4.4141 3.3912 19 6 4.4678 -4.2172 4.8823 20 7 3.3332 -3.6409 5.2143 21 14 5.2899 -5.4096 6.0620 22 1 6.6398 -4.9031 6.4173 23 1 4.4685 -5.5336 7.2930 24 1 5.4151 -6.7398 5.4139 25 6 2.1980 -1.1970 0.0059 26 6 1.4444 -2.5021 0.0063 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6583 2.1326 -0.0050 31 1 4.1205 2.1326 0.0053 32 1 6.1663 -2.8528 1.5593 33 1 5.2512 -1.2362 3.6408 34 1 3.7805 -0.9114 2.6922 35 1 3.6576 -1.6984 4.2841 36 1 2.9231 -3.8352 6.0716 37 1 1.4063 -2.9000 -1.0077 38 1 1.9517 -3.2142 0.6572 39 1 0.4303 -2.3360 0.3698 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178320663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:41 Heat of formation + Delta-G solvation = -51.190906 kcal Electronic energy + Delta-G solvation = -27878.203355 eV Core-core repulsion = 23916.501020 eV Total energy + Delta-G solvation = -3961.702335 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.45044 -41.00907 -38.60537 -37.79655 -37.23703 -36.98893 -35.02031 -34.12810 -33.80808 -30.18282 -29.80624 -28.53871 -27.28666 -26.16575 -24.34279 -22.96265 -22.55405 -20.71595 -20.07932 -19.84044 -19.18921 -18.78832 -18.29761 -17.80697 -17.49514 -17.00784 -16.29076 -15.98275 -15.53244 -15.36293 -15.02288 -14.62068 -14.28812 -14.10075 -13.93981 -13.75971 -13.58933 -13.51146 -13.37678 -13.10061 -13.06193 -12.99780 -12.83315 -12.72682 -12.52299 -12.37599 -12.30979 -12.18360 -12.02335 -11.91995 -11.46121 -11.22014 -10.72654 -10.59569 -10.20338 -10.10743 -8.16378 -6.29171 -1.54037 -0.68295 -0.44117 0.14627 0.20392 1.45812 1.46621 1.54123 1.87510 2.10648 2.44112 2.61554 3.00694 3.13458 3.33981 3.54937 3.66364 3.70962 3.80571 4.10596 4.33543 4.44538 4.54324 4.55642 4.63112 4.73369 4.79282 4.82237 4.85460 4.98690 5.02958 5.11301 5.18738 5.31650 5.52752 5.58084 5.69010 5.94857 6.10392 6.29560 6.46974 6.79488 7.39638 8.89058 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.013469 B = 0.005517 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.295924 B = 5073.882517 C = 5703.943570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.050 4.050 3 C -0.055 4.055 4 C -0.068 4.068 5 C 0.014 3.986 6 N 0.016 4.984 7 O -0.136 6.136 8 O -0.183 6.183 9 C -0.645 4.645 10 S 2.694 3.306 11 O -0.969 6.969 12 O -0.980 6.980 13 N -1.087 6.087 14 C 0.275 3.725 15 H 0.031 0.969 16 C -0.141 4.141 17 C -0.543 4.543 18 H 0.062 0.938 19 C 0.022 3.978 20 N -0.911 5.911 21 Si 0.960 3.040 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.274 1.274 25 C 0.014 3.986 26 C -0.167 4.167 27 H 0.106 0.894 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.206 0.794 31 H 0.183 0.817 32 H 0.418 0.582 33 H 0.029 0.971 34 H 0.020 0.980 35 H 0.077 0.923 36 H 0.267 0.733 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.552 12.246 -9.524 18.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.051 4.051 3 C -0.073 4.073 4 C -0.087 4.087 5 C -0.070 4.070 6 N 0.531 4.469 7 O -0.359 6.359 8 O -0.388 6.388 9 C -0.731 4.731 10 S 2.782 3.218 11 O -0.959 6.959 12 O -0.970 6.970 13 N -0.849 5.849 14 C 0.169 3.831 15 H 0.049 0.951 16 C -0.201 4.201 17 C -0.583 4.583 18 H 0.080 0.920 19 C -0.178 4.178 20 N -0.549 5.549 21 Si 0.785 3.215 22 H -0.197 1.197 23 H -0.205 1.205 24 H -0.199 1.199 25 C 0.012 3.988 26 C -0.224 4.224 27 H 0.124 0.876 28 H 0.103 0.897 29 H 0.123 0.877 30 H 0.223 0.777 31 H 0.201 0.799 32 H 0.254 0.746 33 H 0.048 0.952 34 H 0.039 0.961 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.537 11.576 -10.066 18.611 hybrid contribution 1.538 -0.169 0.998 1.841 sum -8.999 11.407 -9.068 17.127 Atomic orbital electron populations 1.21223 0.86078 1.05782 1.05221 1.20902 0.99752 0.91315 0.93145 1.21940 0.91364 1.00502 0.93486 1.21604 0.96135 0.96298 0.94675 1.20678 0.77803 0.97079 1.11421 1.43988 1.04389 1.00321 0.98218 1.94417 1.69364 1.21093 1.51004 1.94577 1.69755 1.20579 1.53897 1.30604 1.07343 1.19251 1.15952 1.01648 0.72627 0.74294 0.73188 1.93554 1.60758 1.55074 1.86475 1.93567 1.55619 1.86944 1.60831 1.55366 1.18032 1.89093 1.22453 1.18349 0.90049 0.93509 0.81160 0.95091 1.22072 0.99902 0.96499 1.01582 1.21536 1.08962 1.26023 1.01766 0.91988 1.25612 0.95487 0.97600 0.99146 1.69933 1.18249 1.43610 1.23143 0.85583 0.78549 0.79318 0.78027 1.19727 1.20461 1.19930 1.19952 0.89051 0.99012 0.90784 1.21898 1.02095 0.92518 1.05851 0.87554 0.89749 0.87675 0.77688 0.79938 0.74575 0.95222 0.96055 0.90400 0.92375 0.88480 0.88564 0.87024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 9.58 71.23 0.68 -0.56 16 2 C -0.05 -0.92 5.88 -19.87 -0.12 -1.03 16 3 C -0.05 -0.82 9.70 22.27 0.22 -0.60 16 4 C -0.07 -1.47 9.56 22.27 0.21 -1.25 16 5 C 0.01 0.44 6.68 36.37 0.24 0.68 16 6 N 0.02 0.60 4.42 -46.47 -0.21 0.40 16 7 O -0.14 -4.76 18.48 18.89 0.35 -4.41 16 8 O -0.18 -7.82 11.97 26.54 0.32 -7.50 16 9 C -0.64 -22.24 5.04 22.27 0.11 -22.13 16 10 S 2.69 112.01 4.84 -56.49 -0.27 111.73 16 11 O -0.97 -41.85 12.70 -128.00 -1.63 -43.48 16 12 O -0.98 -44.42 14.78 -118.17 -1.75 -46.17 16 13 N -1.09 -48.66 4.48 -172.53 -0.77 -49.43 16 14 C 0.27 13.59 2.91 44.25 0.13 13.72 16 15 H 0.03 1.64 7.14 -2.39 -0.02 1.63 16 16 C -0.14 -6.59 9.29 71.98 0.67 -5.92 16 17 C -0.54 -29.35 8.78 25.60 0.22 -29.12 16 18 H 0.06 3.31 7.81 -2.91 -0.02 3.29 16 19 C 0.02 1.18 5.30 84.65 0.45 1.63 16 20 N -0.91 -49.34 11.32 21.45 0.24 -49.10 16 21 Si 0.96 42.51 29.54 68.60 2.03 44.54 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 C 0.01 0.40 5.88 -19.87 -0.12 0.28 16 26 C -0.17 -4.60 8.14 71.24 0.58 -4.02 16 27 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.08 0.92 5.87 -2.39 -0.01 0.90 16 29 H 0.10 0.52 8.09 -2.39 -0.02 0.50 16 30 H 0.21 0.84 8.06 -2.91 -0.02 0.81 16 31 H 0.18 2.93 7.64 -2.91 -0.02 2.91 16 32 H 0.42 18.31 7.84 -96.74 -0.76 17.55 16 33 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.02 0.86 7.17 -2.39 -0.02 0.85 16 35 H 0.08 3.93 6.07 -2.39 -0.01 3.92 16 36 H 0.27 13.71 8.31 -92.70 -0.77 12.93 16 37 H 0.10 2.46 8.05 -2.39 -0.02 2.44 16 38 H 0.10 3.46 5.00 -10.06 -0.05 3.41 16 39 H 0.11 2.21 5.63 -2.39 -0.01 2.20 16 Total: -1.00 -72.05 329.55 1.92 -70.13 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.32 Total: 21.63 kcal Atomic # 6 Polarization: -51.63 SS G_CDS: 3.28 Total: -48.34 kcal Atomic # 7 Polarization: -97.40 SS G_CDS: -0.73 Total: -98.13 kcal Atomic # 8 Polarization: -98.85 SS G_CDS: -2.70 Total: -101.56 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 16 Polarization: 112.01 SS G_CDS: -0.27 Total: 111.73 kcal Total: -72.05 1.92 -70.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178320663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.943 kcal (2) G-P(sol) polarization free energy of solvation -72.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds