Wall clock time and date at job start Tue Mar 31 2020 14:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29502 * 1 3 3 Si 1.86790 * 120.00124 * 2 1 4 4 H 1.48505 * 109.47112 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47389 * 299.99728 * 3 2 1 6 6 H 1.48495 * 109.47577 * 59.99741 * 3 2 1 7 7 C 1.46574 * 119.99567 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99900 * 175.47503 * 7 2 1 9 9 C 1.39658 * 120.00439 * 355.47607 * 7 2 1 10 10 C 1.41659 * 120.19348 * 214.43635 * 9 7 2 11 11 C 1.35921 * 119.79185 * 180.02562 * 10 9 7 12 12 C 1.40013 * 120.20302 * 0.02562 * 11 10 9 13 13 N 1.38188 * 119.79857 * 179.97438 * 12 11 10 14 14 C 1.34768 * 120.00291 * 35.44501 * 13 12 11 15 15 O 1.21579 * 120.00299 * 355.77774 * 14 13 12 16 16 C 1.47472 * 120.00112 * 175.78217 * 14 13 12 17 17 C 1.39744 * 120.19433 * 359.71900 * 16 14 13 18 18 C 1.37773 * 119.90436 * 180.32100 * 17 16 14 19 19 N 1.48010 * 119.84579 * 179.97438 * 18 17 16 20 20 O 1.31701 * 120.00101 * 179.97438 * 19 18 17 21 21 O 1.31698 * 120.00338 * 0.02562 * 19 18 17 22 22 C 1.38557 * 120.30716 * 359.93304 * 18 17 16 23 23 C 1.38065 * 120.39700 * 0.04823 * 22 18 17 24 24 C 1.38701 * 120.08662 * 359.97438 * 23 22 18 25 25 O 1.35651 * 120.15208 * 179.97438 * 24 23 22 26 26 C 1.39998 * 120.39380 * 0.23355 * 12 11 10 27 27 C 1.35923 * 120.20503 * 359.47875 * 26 12 11 28 28 H 0.97001 * 119.99353 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.10620 * 359.97438 * 10 9 7 30 30 H 1.08002 * 119.89988 * 179.97438 * 11 10 9 31 31 H 0.96998 * 119.99440 * 215.43635 * 13 12 11 32 32 H 1.07997 * 120.04464 * 0.25725 * 17 16 14 33 33 H 1.08002 * 119.80611 * 180.02562 * 22 18 17 34 34 H 1.08001 * 119.95706 * 179.97438 * 23 22 18 35 35 H 0.96701 * 113.99922 * 270.02277 * 25 24 23 36 36 H 1.07996 * 119.90033 * 179.72489 * 26 12 11 37 37 H 1.07991 * 120.10715 * 180.23182 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2950 0.0000 0.0000 3 14 2.2290 1.6176 0.0000 4 1 3.6890 1.3462 -0.0006 5 1 1.8704 2.3963 -1.2125 6 1 1.8703 2.3964 1.2124 7 6 2.0278 -1.2694 0.0006 8 1 3.1053 -1.2710 -0.0732 9 6 1.3328 -2.4770 0.0965 10 6 1.8987 -3.5711 0.7961 11 6 1.2153 -4.7427 0.8839 12 6 -0.0439 -4.8703 0.2852 13 7 -0.7311 -6.0655 0.3793 14 6 -0.6449 -6.8059 1.5021 15 8 0.0969 -6.4617 2.4018 16 6 -1.4502 -8.0336 1.6394 17 6 -2.3085 -8.4300 0.6103 18 6 -3.0631 -9.5744 0.7477 19 7 -3.9722 -9.9927 -0.3429 20 8 -4.6945 -11.0865 -0.2150 21 8 -4.0580 -9.2717 -1.4417 22 6 -2.9743 -10.3361 1.9017 23 6 -2.1302 -9.9565 2.9261 24 6 -1.3634 -8.8070 2.8054 25 8 -0.5340 -8.4325 3.8113 26 6 -0.6085 -3.7960 -0.4127 27 6 0.0580 -2.6151 -0.5058 28 1 -0.4849 0.8401 -0.0004 29 1 2.8704 -3.4749 1.2574 30 1 1.6453 -5.5782 1.4165 31 1 -1.2756 -6.3715 -0.3629 32 1 -2.3809 -7.8394 -0.2910 33 1 -3.5693 -11.2321 2.0006 34 1 -2.0669 -10.5553 3.8227 35 1 -0.9460 -7.8509 4.4649 36 1 -1.5783 -3.9047 -0.8753 37 1 -0.3806 -1.7862 -1.0414 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179394033.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:09 Heat of formation + Delta-G solvation = 7.651900 kcal Electronic energy + Delta-G solvation = -26074.933873 eV Core-core repulsion = 21980.339203 eV Total energy + Delta-G solvation = -4094.594671 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -41.21387 -39.58759 -38.85730 -37.11501 -37.08772 -34.73659 -34.53817 -33.26485 -32.05804 -31.34334 -29.63930 -29.01087 -26.64201 -25.47354 -24.15162 -22.81704 -21.70010 -20.94863 -20.07777 -19.11867 -18.85607 -18.44109 -17.57797 -16.92523 -16.70050 -16.39572 -16.05185 -15.80731 -15.27962 -15.10157 -14.71007 -14.19079 -13.95047 -13.65643 -13.19346 -13.05019 -12.82611 -12.76955 -12.19534 -11.78327 -11.67855 -11.52289 -11.47297 -11.33802 -11.23595 -11.10669 -10.95169 -10.81955 -10.18763 -9.98315 -9.71302 -9.62615 -9.52792 -9.32707 -9.02092 -7.62244 -7.02437 -6.86830 -4.36272 -1.05869 0.06993 0.57638 0.76348 2.25338 2.62027 2.96911 2.99042 3.03345 3.10716 3.24815 3.41706 3.50753 3.79634 3.80644 3.90283 4.25127 4.40163 4.47075 4.70716 4.93133 4.98693 5.08756 5.34040 5.43908 5.57120 5.72178 6.14795 6.38519 6.43520 6.66426 6.79849 6.84296 7.08483 7.10725 7.22546 7.58409 7.62296 7.80813 7.98929 8.12920 8.16877 8.46708 8.57968 8.72056 8.97416 9.96217 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.020966 B = 0.002571 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.193147 B =10888.581580 C =11905.532300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.070 3.930 3 Si 0.922 3.078 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.464 4.464 8 H 0.081 0.919 9 C 0.107 3.893 10 C -0.223 4.223 11 C -0.069 4.069 12 C -0.032 4.032 13 N -0.631 5.631 14 C 0.535 3.465 15 O -0.505 6.505 16 C -0.151 4.151 17 C -0.007 4.007 18 C -0.024 4.024 19 N -0.016 5.016 20 O -0.172 6.172 21 O -0.165 6.165 22 C -0.020 4.020 23 C -0.154 4.154 24 C 0.229 3.771 25 O -0.466 6.466 26 C -0.105 4.105 27 C -0.162 4.162 28 H 0.286 0.714 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.393 0.607 32 H 0.162 0.838 33 H 0.163 0.837 34 H 0.162 0.838 35 H 0.411 0.589 36 H 0.090 0.910 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.501 -14.349 4.860 16.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.153 4.153 3 Si 0.746 3.254 4 H -0.180 1.180 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.492 4.492 8 H 0.099 0.901 9 C 0.104 3.896 10 C -0.243 4.243 11 C -0.089 4.089 12 C -0.125 4.125 13 N -0.273 5.273 14 C 0.321 3.679 15 O -0.382 6.382 16 C -0.156 4.156 17 C -0.027 4.027 18 C -0.111 4.111 19 N 0.464 4.536 20 O -0.365 6.365 21 O -0.360 6.360 22 C -0.039 4.039 23 C -0.173 4.173 24 C 0.181 3.819 25 O -0.279 6.279 26 C -0.126 4.126 27 C -0.181 4.181 28 H 0.098 0.902 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.228 0.772 32 H 0.180 0.820 33 H 0.181 0.819 34 H 0.180 0.820 35 H 0.273 0.727 36 H 0.108 0.892 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.383 -14.066 5.714 16.109 hybrid contribution -0.733 0.717 -0.427 1.111 sum -6.116 -13.349 5.287 15.607 Atomic orbital electron populations 1.69098 1.08592 1.29928 1.31862 1.27466 0.94623 1.01806 0.91449 0.86039 0.81044 0.79696 0.78671 1.18035 1.19655 1.19673 1.20604 0.94437 0.89190 1.45017 0.90050 1.17706 0.92139 0.91980 0.87752 1.20771 1.01468 0.95233 1.06825 1.20348 0.92351 0.97577 0.98604 1.17123 0.94800 0.85739 1.14800 1.42589 1.47875 1.21304 1.15496 1.17628 0.83624 0.83186 0.83449 1.90826 1.37729 1.69838 1.39781 1.20734 1.00672 0.98569 0.95617 1.21227 0.89924 0.92497 0.99097 1.20165 1.00254 1.00886 0.89750 1.50385 0.99626 1.01011 1.02599 1.96274 1.41857 1.10176 1.88214 1.96315 1.73340 1.51577 1.14728 1.21108 0.95431 0.98271 0.89092 1.21509 0.96620 0.98436 1.00742 1.18876 0.84640 0.90301 0.88115 1.84694 1.37066 1.69776 1.36412 1.20253 0.97919 0.93036 1.01346 1.21142 0.97773 0.95801 1.03426 0.90218 0.88716 0.87653 0.77245 0.82035 0.81941 0.82026 0.72695 0.89234 0.85487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.85 10.72 55.99 0.60 -18.25 16 2 C 0.07 1.67 5.59 -15.17 -0.08 1.58 16 3 Si 0.92 17.80 29.65 -169.99 -5.04 12.76 16 4 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 5 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 6 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.46 -11.94 9.25 -35.69 -0.33 -12.27 16 8 H 0.08 2.02 7.94 -52.49 -0.42 1.60 16 9 C 0.11 2.78 5.59 -106.76 -0.60 2.19 16 10 C -0.22 -5.53 9.76 -39.11 -0.38 -5.91 16 11 C -0.07 -1.61 8.59 -39.75 -0.34 -1.95 16 12 C -0.03 -0.69 6.30 -83.67 -0.53 -1.22 16 13 N -0.63 -10.64 5.21 -10.68 -0.06 -10.70 16 14 C 0.54 8.71 7.58 -12.50 -0.09 8.61 16 15 O -0.51 -9.89 12.56 -16.58 -0.21 -10.10 16 16 C -0.15 -1.78 5.89 -104.84 -0.62 -2.40 16 17 C -0.01 -0.08 9.06 -39.19 -0.36 -0.43 16 18 C -0.02 -0.24 6.88 -80.00 -0.55 -0.79 16 19 N -0.02 -0.20 4.98 33.94 0.17 -0.03 16 20 O -0.17 -2.21 19.14 -31.57 -0.60 -2.82 16 21 O -0.16 -2.29 19.13 -31.57 -0.60 -2.89 16 22 C -0.02 -0.14 9.56 -39.53 -0.38 -0.52 16 23 C -0.15 -1.02 9.98 -39.47 -0.39 -1.41 16 24 C 0.23 2.22 6.72 -38.68 -0.26 1.96 16 25 O -0.47 -4.77 11.58 -40.53 -0.47 -5.24 16 26 C -0.11 -2.35 9.89 -39.75 -0.39 -2.74 16 27 C -0.16 -4.04 8.68 -39.11 -0.34 -4.38 16 28 H 0.29 6.24 8.27 -40.82 -0.34 5.91 16 29 H 0.09 2.24 8.06 -52.49 -0.42 1.81 16 30 H 0.11 2.43 6.22 -52.49 -0.33 2.10 16 31 H 0.39 5.28 6.85 -40.82 -0.28 5.00 16 32 H 0.16 1.55 5.92 -52.49 -0.31 1.24 16 33 H 0.16 0.87 7.56 -52.49 -0.40 0.47 16 34 H 0.16 0.59 8.06 -52.49 -0.42 0.17 16 35 H 0.41 2.62 9.06 45.56 0.41 3.04 16 36 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.13 3.26 6.16 -52.49 -0.32 2.94 16 LS Contribution 335.74 15.07 5.06 5.06 Total: -1.00 -31.48 335.74 -8.84 -40.32 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -2.04 Total: 11.57 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -5.64 Total: -19.68 kcal Atomic # 7 Polarization: -29.69 SS G_CDS: 0.71 Total: -28.98 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -1.89 Total: -21.05 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.04 Total: 12.76 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.48 -8.84 -40.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179394033.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.972 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds