Wall clock time and date at job start Tue Mar 31 2020 14:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29502 * 1 3 3 Si 1.86790 * 120.00124 * 2 1 4 4 H 1.48505 * 109.47112 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47389 * 299.99728 * 3 2 1 6 6 H 1.48495 * 109.47577 * 59.99741 * 3 2 1 7 7 C 1.46574 * 119.99567 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99900 * 175.47503 * 7 2 1 9 9 C 1.39658 * 120.00439 * 355.47607 * 7 2 1 10 10 C 1.41659 * 120.19348 * 214.43635 * 9 7 2 11 11 C 1.35921 * 119.79185 * 180.02562 * 10 9 7 12 12 C 1.40013 * 120.20302 * 0.02562 * 11 10 9 13 13 N 1.38188 * 119.79857 * 179.97438 * 12 11 10 14 14 C 1.34768 * 120.00291 * 35.44501 * 13 12 11 15 15 O 1.21579 * 120.00299 * 355.77774 * 14 13 12 16 16 C 1.47472 * 120.00112 * 175.78217 * 14 13 12 17 17 C 1.39744 * 120.19433 * 359.71900 * 16 14 13 18 18 C 1.37773 * 119.90436 * 180.32100 * 17 16 14 19 19 N 1.48010 * 119.84579 * 179.97438 * 18 17 16 20 20 O 1.31701 * 120.00101 * 179.97438 * 19 18 17 21 21 O 1.31698 * 120.00338 * 0.02562 * 19 18 17 22 22 C 1.38557 * 120.30716 * 359.93304 * 18 17 16 23 23 C 1.38065 * 120.39700 * 0.04823 * 22 18 17 24 24 C 1.38701 * 120.08662 * 359.97438 * 23 22 18 25 25 O 1.35651 * 120.15208 * 179.97438 * 24 23 22 26 26 C 1.39998 * 120.39380 * 0.23355 * 12 11 10 27 27 C 1.35923 * 120.20503 * 359.47875 * 26 12 11 28 28 H 0.97001 * 119.99353 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.10620 * 359.97438 * 10 9 7 30 30 H 1.08002 * 119.89988 * 179.97438 * 11 10 9 31 31 H 0.96998 * 119.99440 * 215.43635 * 13 12 11 32 32 H 1.07997 * 120.04464 * 0.25725 * 17 16 14 33 33 H 1.08002 * 119.80611 * 180.02562 * 22 18 17 34 34 H 1.08001 * 119.95706 * 179.97438 * 23 22 18 35 35 H 0.96701 * 113.99922 * 270.02277 * 25 24 23 36 36 H 1.07996 * 119.90033 * 179.72489 * 26 12 11 37 37 H 1.07991 * 120.10715 * 180.23182 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2950 0.0000 0.0000 3 14 2.2290 1.6176 0.0000 4 1 3.6890 1.3462 -0.0006 5 1 1.8704 2.3963 -1.2125 6 1 1.8703 2.3964 1.2124 7 6 2.0278 -1.2694 0.0006 8 1 3.1053 -1.2710 -0.0732 9 6 1.3328 -2.4770 0.0965 10 6 1.8987 -3.5711 0.7961 11 6 1.2153 -4.7427 0.8839 12 6 -0.0439 -4.8703 0.2852 13 7 -0.7311 -6.0655 0.3793 14 6 -0.6449 -6.8059 1.5021 15 8 0.0969 -6.4617 2.4018 16 6 -1.4502 -8.0336 1.6394 17 6 -2.3085 -8.4300 0.6103 18 6 -3.0631 -9.5744 0.7477 19 7 -3.9722 -9.9927 -0.3429 20 8 -4.6945 -11.0865 -0.2150 21 8 -4.0580 -9.2717 -1.4417 22 6 -2.9743 -10.3361 1.9017 23 6 -2.1302 -9.9565 2.9261 24 6 -1.3634 -8.8070 2.8054 25 8 -0.5340 -8.4325 3.8113 26 6 -0.6085 -3.7960 -0.4127 27 6 0.0580 -2.6151 -0.5058 28 1 -0.4849 0.8401 -0.0004 29 1 2.8704 -3.4749 1.2574 30 1 1.6453 -5.5782 1.4165 31 1 -1.2756 -6.3715 -0.3629 32 1 -2.3809 -7.8394 -0.2910 33 1 -3.5693 -11.2321 2.0006 34 1 -2.0669 -10.5553 3.8227 35 1 -0.9460 -7.8509 4.4649 36 1 -1.5783 -3.9047 -0.8753 37 1 -0.3806 -1.7862 -1.0414 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179394033.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:08 Heat of formation + Delta-G solvation = -11.751363 kcal Electronic energy + Delta-G solvation = -26075.775262 eV Core-core repulsion = 21980.339203 eV Total energy + Delta-G solvation = -4095.436059 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.17848 -40.81292 -39.87615 -38.76101 -37.91875 -36.16392 -35.67155 -34.91556 -33.04755 -32.15794 -31.48787 -30.73787 -27.52628 -26.96262 -25.31886 -23.80215 -23.26590 -22.53948 -21.51439 -20.13371 -19.73353 -19.44258 -19.31850 -18.22063 -17.91612 -17.26282 -17.14010 -16.87273 -16.72381 -16.21664 -15.90699 -15.66656 -15.14920 -14.83735 -14.53425 -14.44780 -14.02632 -13.79856 -13.67294 -13.55040 -13.33680 -12.89989 -12.81274 -12.65240 -12.51981 -12.40480 -12.09984 -11.95228 -11.79119 -11.39303 -11.26765 -10.94677 -10.70991 -10.68120 -10.50790 -9.50127 -8.83789 -8.65230 -6.27258 -1.97122 -0.74267 -0.20272 -0.09447 0.79902 1.18541 1.38256 1.39315 1.52489 1.58797 2.06501 2.18194 2.21613 2.66644 2.72455 3.02549 3.13369 3.52120 3.56778 3.65016 3.80810 4.17240 4.29094 4.34953 4.38370 4.51439 4.60153 4.74247 4.91236 5.00270 5.05392 5.10479 5.26714 5.43677 5.46122 5.68957 5.87341 6.00969 6.11218 6.28832 6.50671 6.56958 6.63933 6.81939 7.01493 7.21935 8.20695 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.020966 B = 0.002571 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.193147 B =10888.581580 C =11905.532300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.032 3.968 3 Si 0.996 3.004 4 H -0.258 1.258 5 H -0.258 1.258 6 H -0.264 1.264 7 C -0.506 4.506 8 H 0.076 0.924 9 C 0.077 3.923 10 C -0.241 4.241 11 C -0.079 4.079 12 C -0.014 4.014 13 N -0.633 5.633 14 C 0.540 3.460 15 O -0.541 6.541 16 C -0.172 4.172 17 C 0.002 3.998 18 C -0.037 4.037 19 N -0.011 5.011 20 O -0.162 6.162 21 O -0.216 6.216 22 C 0.005 3.995 23 C -0.130 4.130 24 C 0.237 3.763 25 O -0.482 6.482 26 C -0.107 4.107 27 C -0.181 4.181 28 H 0.296 0.704 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.411 0.589 32 H 0.163 0.837 33 H 0.193 0.807 34 H 0.205 0.795 35 H 0.426 0.574 36 H 0.119 0.881 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.764 -16.347 6.234 19.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.189 4.189 3 Si 0.816 3.184 4 H -0.182 1.182 5 H -0.183 1.183 6 H -0.188 1.188 7 C -0.534 4.534 8 H 0.094 0.906 9 C 0.075 3.925 10 C -0.261 4.261 11 C -0.099 4.099 12 C -0.107 4.107 13 N -0.277 5.277 14 C 0.329 3.671 15 O -0.419 6.419 16 C -0.176 4.176 17 C -0.019 4.019 18 C -0.124 4.124 19 N 0.464 4.536 20 O -0.361 6.361 21 O -0.400 6.400 22 C -0.014 4.014 23 C -0.148 4.148 24 C 0.188 3.812 25 O -0.298 6.298 26 C -0.127 4.127 27 C -0.201 4.201 28 H 0.108 0.892 29 H 0.112 0.888 30 H 0.125 0.875 31 H 0.248 0.752 32 H 0.180 0.820 33 H 0.210 0.790 34 H 0.221 0.779 35 H 0.291 0.709 36 H 0.137 0.863 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.674 -16.035 7.010 18.730 hybrid contribution -0.431 1.033 -0.671 1.305 sum -7.105 -15.002 6.340 17.769 Atomic orbital electron populations 1.69123 1.09858 1.31468 1.31930 1.28322 0.95491 1.04655 0.90418 0.84954 0.79295 0.74965 0.79228 1.18175 1.18284 1.18830 1.20804 0.94482 0.90500 1.47641 0.90615 1.18006 0.93117 0.92679 0.88731 1.20897 1.01860 0.95912 1.07463 1.20448 0.93192 0.97162 0.99125 1.17147 0.94071 0.87124 1.12377 1.42517 1.48070 1.20139 1.16970 1.18210 0.82874 0.83775 0.82288 1.90805 1.39293 1.71007 1.40828 1.20263 1.01966 0.97780 0.97623 1.21137 0.89314 0.92696 0.98712 1.20332 1.00425 1.01524 0.90081 1.50629 0.99496 1.00610 1.02847 1.96250 1.41716 1.10134 1.88045 1.96332 1.75145 1.52434 1.16069 1.21554 0.94474 0.98048 0.87369 1.21824 0.94493 0.96895 1.01636 1.19126 0.84228 0.90705 0.87112 1.84650 1.38024 1.70287 1.36837 1.20500 0.98835 0.92239 1.01088 1.21129 0.98069 0.96634 1.04254 0.89160 0.88828 0.87546 0.75162 0.81971 0.78957 0.77854 0.70873 0.86283 0.86673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.05 10.72 23.22 0.25 -39.80 16 2 C 0.03 1.54 5.59 87.21 0.49 2.03 16 3 Si 1.00 36.89 29.65 68.60 2.03 38.93 16 4 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 5 H -0.26 -8.97 7.11 99.48 0.71 -8.27 16 6 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 7 C -0.51 -27.31 9.25 24.79 0.23 -27.08 16 8 H 0.08 3.98 7.94 -2.91 -0.02 3.96 16 9 C 0.08 4.22 5.59 -21.25 -0.12 4.10 16 10 C -0.24 -12.56 9.76 22.58 0.22 -12.34 16 11 C -0.08 -3.81 8.59 22.16 0.19 -3.62 16 12 C -0.01 -0.59 6.30 39.00 0.25 -0.35 16 13 N -0.63 -21.04 5.21 -305.99 -1.59 -22.63 16 14 C 0.54 17.18 7.58 86.68 0.66 17.84 16 15 O -0.54 -21.08 12.56 16.96 0.21 -20.87 16 16 C -0.17 -3.71 5.89 -20.01 -0.12 -3.83 16 17 C 0.00 0.03 9.06 22.52 0.20 0.23 16 18 C -0.04 -0.63 6.88 36.34 0.25 -0.38 16 19 N -0.01 -0.25 4.98 -46.55 -0.23 -0.49 16 20 O -0.16 -3.75 19.14 3.51 0.07 -3.68 16 21 O -0.22 -5.97 19.13 3.52 0.07 -5.90 16 22 C 0.00 0.05 9.56 22.30 0.21 0.26 16 23 C -0.13 -1.04 9.98 22.34 0.22 -0.82 16 24 C 0.24 3.82 6.72 22.85 0.15 3.97 16 25 O -0.48 -8.63 11.58 -68.74 -0.80 -9.42 16 26 C -0.11 -4.80 9.89 22.16 0.22 -4.58 16 27 C -0.18 -9.38 8.68 22.58 0.20 -9.19 16 28 H 0.30 13.10 8.27 -92.71 -0.77 12.34 16 29 H 0.09 4.70 8.06 -2.91 -0.02 4.67 16 30 H 0.11 5.03 6.22 -2.91 -0.02 5.02 16 31 H 0.41 10.68 6.85 -92.71 -0.64 10.05 16 32 H 0.16 2.96 5.92 -2.91 -0.02 2.94 16 33 H 0.19 0.87 7.56 -2.91 -0.02 0.85 16 34 H 0.20 0.08 8.06 -2.91 -0.02 0.05 16 35 H 0.43 4.48 9.06 -74.06 -0.67 3.81 16 36 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 37 H 0.12 6.17 6.16 -2.91 -0.02 6.15 16 Total: -1.00 -72.12 335.74 3.14 -68.98 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: -0.12 Total: 28.63 kcal Atomic # 6 Polarization: -37.00 SS G_CDS: 3.25 Total: -33.75 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: -1.58 Total: -62.92 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -0.45 Total: -39.88 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 2.03 Total: 38.93 kcal Total: -72.12 3.14 -68.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179394033.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.232 kcal (2) G-P(sol) polarization free energy of solvation -72.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds