Wall clock time and date at job start Tue Mar 31 2020 14:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29486 * 1 3 3 Si 1.86803 * 119.99786 * 2 1 4 4 H 1.48504 * 109.46995 * 270.00170 * 3 2 1 5 5 H 1.48498 * 109.47337 * 29.99716 * 3 2 1 6 6 H 1.48502 * 109.47210 * 150.00056 * 3 2 1 7 7 C 1.46577 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00193 * 175.47056 * 7 2 1 9 9 C 1.39658 * 119.99869 * 355.46022 * 7 2 1 10 10 C 1.41660 * 120.19290 * 34.67170 * 9 7 2 11 11 C 1.35916 * 119.79204 * 180.22154 * 10 9 7 12 12 C 1.39998 * 120.20466 * 359.53094 * 11 10 9 13 13 N 1.38187 * 119.80783 * 180.25205 * 12 11 10 14 14 C 1.34777 * 119.99657 * 324.55796 * 13 12 11 15 15 O 1.21575 * 120.00276 * 4.20571 * 14 13 12 16 16 C 1.47469 * 120.00450 * 184.20278 * 14 13 12 17 17 C 1.39743 * 120.19159 * 359.72964 * 16 14 13 18 18 C 1.37777 * 119.90558 * 179.74277 * 17 16 14 19 19 C 1.38556 * 120.30376 * 0.50629 * 18 17 16 20 20 N 1.48017 * 119.80179 * 179.74390 * 19 18 17 21 21 O 1.31696 * 119.99696 * 180.02562 * 20 19 18 22 22 O 1.31697 * 119.99910 * 0.02562 * 20 19 18 23 23 C 1.38059 * 120.39836 * 359.76894 * 19 18 17 24 24 C 1.38702 * 120.08635 * 359.97253 * 23 19 18 25 25 O 1.35648 * 120.15292 * 180.02562 * 24 23 19 26 26 C 1.40010 * 120.39520 * 0.22555 * 12 11 10 27 27 C 1.35922 * 120.20105 * 0.02562 * 26 12 11 28 28 H 0.96996 * 120.00925 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.09895 * 0.02562 * 10 9 7 30 30 H 1.07998 * 119.89770 * 179.80038 * 11 10 9 31 31 H 0.96996 * 120.00923 * 144.55568 * 13 12 11 32 32 H 1.08007 * 120.04692 * 359.97438 * 17 16 14 33 33 H 1.07998 * 119.84707 * 180.24953 * 18 17 16 34 34 H 1.07996 * 119.95917 * 180.02562 * 23 19 18 35 35 H 0.96695 * 114.00323 * 269.98263 * 25 24 23 36 36 H 1.08000 * 119.89853 * 180.02562 * 26 12 11 37 37 H 1.07996 * 120.09824 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2288 1.6178 0.0000 4 1 2.4763 2.0465 -1.4001 5 1 1.4262 2.6527 0.7000 6 1 3.5264 1.4403 0.7000 7 6 2.0279 -1.2693 -0.0006 8 1 3.1054 -1.2707 -0.0744 9 6 1.3329 -2.4770 0.0946 10 6 0.0599 -2.6161 -0.5111 11 6 -0.6112 -3.7936 -0.4095 12 6 -0.0440 -4.8702 0.2826 13 7 -0.7313 -6.0653 0.3764 14 6 -2.0743 -6.0632 0.4889 15 8 -2.6876 -5.0151 0.4311 16 6 -2.8002 -7.3323 0.6821 17 6 -2.0999 -8.5401 0.7434 18 6 -2.7836 -9.7218 0.9293 19 6 -4.1642 -9.7199 1.0455 20 7 -4.8879 -10.9965 1.2394 21 8 -6.2002 -10.9992 1.3498 22 8 -4.2194 -12.1295 1.3014 23 6 -4.8691 -8.5345 0.9811 24 6 -4.1970 -7.3349 0.7997 25 8 -4.8882 -6.1694 0.7367 26 6 1.2159 -4.7434 0.8801 27 6 1.8992 -3.5717 0.7929 28 1 -0.4851 0.8399 -0.0004 29 1 -0.3772 -1.7880 -1.0492 30 1 -1.5832 -3.9005 -0.8679 31 1 -0.2473 -6.9058 0.3612 32 1 -1.0240 -8.5468 0.6489 33 1 -2.2411 -10.6542 0.9806 34 1 -5.9451 -8.5413 1.0730 35 1 -5.1622 -5.9224 -0.1571 36 1 1.6462 -5.5793 1.4117 37 1 2.8710 -3.4758 1.2540 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184602193.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:14 Heat of formation + Delta-G solvation = 9.012889 kcal Electronic energy + Delta-G solvation = -25895.138612 eV Core-core repulsion = 21800.602958 eV Total energy + Delta-G solvation = -4094.535654 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -41.18746 -39.68726 -38.76750 -37.14320 -37.10755 -34.77785 -34.59957 -33.30513 -32.29481 -30.74100 -29.63107 -29.23832 -27.47149 -24.96295 -23.64415 -23.18065 -21.62412 -21.16762 -19.94574 -19.62913 -18.51232 -18.01308 -17.66399 -17.56897 -16.72772 -16.37143 -15.90250 -15.53153 -15.43461 -15.06238 -14.67765 -14.45494 -14.04001 -13.55655 -13.28654 -12.94021 -12.77854 -12.59745 -12.20539 -11.85014 -11.75531 -11.67932 -11.60992 -11.33514 -11.23843 -11.08759 -11.02094 -10.58676 -10.15167 -10.05121 -10.01437 -9.70499 -9.56379 -9.25409 -8.88147 -7.64730 -7.06583 -6.90620 -4.38957 -1.20656 0.35221 0.39992 0.68981 2.24927 2.63196 2.94813 2.96345 3.00258 3.06990 3.19555 3.40023 3.54215 3.77457 3.82425 4.07716 4.24569 4.44600 4.48048 4.56474 4.91810 5.11008 5.16692 5.30322 5.44716 5.53724 5.74358 6.02905 6.29033 6.37162 6.63459 6.76038 6.86561 7.01003 7.17927 7.21936 7.51153 7.54896 7.84403 7.96687 8.02917 8.11841 8.48225 8.53946 8.68259 8.94032 9.94990 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.033762 B = 0.002280 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.139585 B =12278.126796 C =13003.717049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.069 3.931 3 Si 0.922 3.078 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.465 4.465 8 H 0.081 0.919 9 C 0.107 3.893 10 C -0.167 4.167 11 C -0.078 4.078 12 C -0.032 4.032 13 N -0.628 5.628 14 C 0.525 3.475 15 O -0.497 6.497 16 C -0.091 4.091 17 C -0.077 4.077 18 C -0.067 4.067 19 C 0.022 3.978 20 N -0.021 5.021 21 O -0.166 6.166 22 O -0.163 6.163 23 C -0.089 4.089 24 C 0.169 3.831 25 O -0.460 6.460 26 C -0.096 4.096 27 C -0.220 4.220 28 H 0.287 0.713 29 H 0.126 0.874 30 H 0.105 0.895 31 H 0.392 0.608 32 H 0.158 0.842 33 H 0.163 0.837 34 H 0.167 0.833 35 H 0.405 0.595 36 H 0.089 0.911 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.814 -13.145 -0.937 14.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.155 4.155 3 Si 0.745 3.255 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.492 4.492 8 H 0.099 0.901 9 C 0.104 3.896 10 C -0.186 4.186 11 C -0.098 4.098 12 C -0.125 4.125 13 N -0.271 5.271 14 C 0.311 3.689 15 O -0.372 6.372 16 C -0.095 4.095 17 C -0.097 4.097 18 C -0.086 4.086 19 C -0.064 4.064 20 N 0.460 4.540 21 O -0.360 6.360 22 O -0.358 6.358 23 C -0.109 4.109 24 C 0.121 3.879 25 O -0.272 6.272 26 C -0.116 4.116 27 C -0.240 4.240 28 H 0.100 0.900 29 H 0.143 0.857 30 H 0.122 0.878 31 H 0.227 0.773 32 H 0.175 0.825 33 H 0.181 0.819 34 H 0.184 0.816 35 H 0.264 0.736 36 H 0.107 0.893 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.090 -11.623 -0.457 12.697 hybrid contribution 0.190 -0.148 -0.197 0.311 sum -4.900 -11.770 -0.654 12.766 Atomic orbital electron populations 1.69096 1.08575 1.30178 1.31048 1.27480 0.94627 1.01822 0.91553 0.86095 0.80524 0.79358 0.79478 1.19091 1.20004 1.18202 1.20568 0.94361 0.89220 1.45096 0.90078 1.17704 0.92150 0.91800 0.87929 1.21243 0.97524 0.96349 1.03525 1.20526 0.98430 0.93187 0.97643 1.17127 0.95606 0.87081 1.12669 1.42567 1.05622 1.08813 1.70107 1.17789 0.82985 0.87655 0.80474 1.90862 1.66887 1.31287 1.48205 1.21298 0.94309 0.95279 0.98633 1.21337 1.01191 0.89688 0.97459 1.21034 0.90799 1.01003 0.95783 1.20235 0.92014 0.81816 1.12329 1.50464 1.03191 1.03969 0.96373 1.96294 0.89077 1.95742 1.54911 1.96284 1.67576 1.16700 1.55283 1.21366 1.02972 0.89131 0.97411 1.18057 0.88339 0.85488 0.96038 1.84828 1.73112 1.34922 1.34304 1.20044 0.94517 0.97307 0.99720 1.20671 1.01362 0.94881 1.07043 0.90025 0.85676 0.87753 0.77321 0.82489 0.81918 0.81573 0.73561 0.89308 0.88592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.98 10.73 55.99 0.60 -18.38 16 2 C 0.07 1.65 5.59 -15.18 -0.08 1.57 16 3 Si 0.92 17.65 29.65 -169.99 -5.04 12.61 16 4 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 5 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 6 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 7 C -0.46 -11.73 9.25 -35.69 -0.33 -12.06 16 8 H 0.08 1.95 7.94 -52.48 -0.42 1.53 16 9 C 0.11 2.73 5.58 -106.76 -0.60 2.13 16 10 C -0.17 -4.25 8.68 -39.11 -0.34 -4.59 16 11 C -0.08 -1.83 8.59 -39.76 -0.34 -2.17 16 12 C -0.03 -0.67 6.30 -83.68 -0.53 -1.20 16 13 N -0.63 -9.82 5.21 -10.69 -0.06 -9.88 16 14 C 0.53 8.31 7.58 -12.50 -0.09 8.21 16 15 O -0.50 -9.91 12.56 -16.58 -0.21 -10.12 16 16 C -0.09 -1.03 5.89 -104.85 -0.62 -1.65 16 17 C -0.08 -0.62 9.53 -39.19 -0.37 -0.99 16 18 C -0.07 -0.53 9.55 -39.63 -0.38 -0.90 16 19 C 0.02 0.22 6.88 -79.90 -0.55 -0.33 16 20 N -0.02 -0.25 4.98 33.99 0.17 -0.08 16 21 O -0.17 -2.16 19.13 -31.57 -0.60 -2.77 16 22 O -0.16 -2.05 19.13 -31.57 -0.60 -2.66 16 23 C -0.09 -0.84 9.50 -39.48 -0.38 -1.22 16 24 C 0.17 1.83 6.72 -38.68 -0.26 1.57 16 25 O -0.46 -5.38 11.58 -40.52 -0.47 -5.85 16 26 C -0.10 -1.97 9.89 -39.75 -0.39 -2.36 16 27 C -0.22 -5.07 9.76 -39.11 -0.38 -5.45 16 28 H 0.29 6.41 8.27 -40.82 -0.34 6.07 16 29 H 0.13 3.32 6.18 -52.49 -0.32 3.00 16 30 H 0.10 2.42 6.22 -52.49 -0.33 2.09 16 31 H 0.39 4.40 6.85 -40.82 -0.28 4.12 16 32 H 0.16 0.82 6.41 -52.48 -0.34 0.48 16 33 H 0.16 0.96 7.56 -52.49 -0.40 0.56 16 34 H 0.17 1.38 7.56 -52.49 -0.40 0.98 16 35 H 0.40 3.08 9.06 45.56 0.41 3.49 16 36 H 0.09 1.52 8.06 -52.49 -0.42 1.09 16 37 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 335.75 15.07 5.06 5.06 Total: -1.00 -31.43 335.75 -8.84 -40.26 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -2.04 Total: 11.22 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -5.64 Total: -19.44 kcal Atomic # 7 Polarization: -29.05 SS G_CDS: 0.71 Total: -28.34 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -1.89 Total: -21.38 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.04 Total: 12.61 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.43 -8.84 -40.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184602193.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.276 kcal (2) G-P(sol) polarization free energy of solvation -31.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds