Wall clock time and date at job start Tue Mar 31 2020 14:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29486 * 1 3 3 Si 1.86803 * 119.99786 * 2 1 4 4 H 1.48504 * 109.46995 * 270.00170 * 3 2 1 5 5 H 1.48498 * 109.47337 * 29.99716 * 3 2 1 6 6 H 1.48502 * 109.47210 * 150.00056 * 3 2 1 7 7 C 1.46577 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00193 * 175.47056 * 7 2 1 9 9 C 1.39658 * 119.99869 * 355.46022 * 7 2 1 10 10 C 1.41660 * 120.19290 * 34.67170 * 9 7 2 11 11 C 1.35916 * 119.79204 * 180.22154 * 10 9 7 12 12 C 1.39998 * 120.20466 * 359.53094 * 11 10 9 13 13 N 1.38187 * 119.80783 * 180.25205 * 12 11 10 14 14 C 1.34777 * 119.99657 * 324.55796 * 13 12 11 15 15 O 1.21575 * 120.00276 * 4.20571 * 14 13 12 16 16 C 1.47469 * 120.00450 * 184.20278 * 14 13 12 17 17 C 1.39743 * 120.19159 * 359.72964 * 16 14 13 18 18 C 1.37777 * 119.90558 * 179.74277 * 17 16 14 19 19 C 1.38556 * 120.30376 * 0.50629 * 18 17 16 20 20 N 1.48017 * 119.80179 * 179.74390 * 19 18 17 21 21 O 1.31696 * 119.99696 * 180.02562 * 20 19 18 22 22 O 1.31697 * 119.99910 * 0.02562 * 20 19 18 23 23 C 1.38059 * 120.39836 * 359.76894 * 19 18 17 24 24 C 1.38702 * 120.08635 * 359.97253 * 23 19 18 25 25 O 1.35648 * 120.15292 * 180.02562 * 24 23 19 26 26 C 1.40010 * 120.39520 * 0.22555 * 12 11 10 27 27 C 1.35922 * 120.20105 * 0.02562 * 26 12 11 28 28 H 0.96996 * 120.00925 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.09895 * 0.02562 * 10 9 7 30 30 H 1.07998 * 119.89770 * 179.80038 * 11 10 9 31 31 H 0.96996 * 120.00923 * 144.55568 * 13 12 11 32 32 H 1.08007 * 120.04692 * 359.97438 * 17 16 14 33 33 H 1.07998 * 119.84707 * 180.24953 * 18 17 16 34 34 H 1.07996 * 119.95917 * 180.02562 * 23 19 18 35 35 H 0.96695 * 114.00323 * 269.98263 * 25 24 23 36 36 H 1.08000 * 119.89853 * 180.02562 * 26 12 11 37 37 H 1.07996 * 120.09824 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2288 1.6178 0.0000 4 1 2.4763 2.0465 -1.4001 5 1 1.4262 2.6527 0.7000 6 1 3.5264 1.4403 0.7000 7 6 2.0279 -1.2693 -0.0006 8 1 3.1054 -1.2707 -0.0744 9 6 1.3329 -2.4770 0.0946 10 6 0.0599 -2.6161 -0.5111 11 6 -0.6112 -3.7936 -0.4095 12 6 -0.0440 -4.8702 0.2826 13 7 -0.7313 -6.0653 0.3764 14 6 -2.0743 -6.0632 0.4889 15 8 -2.6876 -5.0151 0.4311 16 6 -2.8002 -7.3323 0.6821 17 6 -2.0999 -8.5401 0.7434 18 6 -2.7836 -9.7218 0.9293 19 6 -4.1642 -9.7199 1.0455 20 7 -4.8879 -10.9965 1.2394 21 8 -6.2002 -10.9992 1.3498 22 8 -4.2194 -12.1295 1.3014 23 6 -4.8691 -8.5345 0.9811 24 6 -4.1970 -7.3349 0.7997 25 8 -4.8882 -6.1694 0.7367 26 6 1.2159 -4.7434 0.8801 27 6 1.8992 -3.5717 0.7929 28 1 -0.4851 0.8399 -0.0004 29 1 -0.3772 -1.7880 -1.0492 30 1 -1.5832 -3.9005 -0.8679 31 1 -0.2473 -6.9058 0.3612 32 1 -1.0240 -8.5468 0.6489 33 1 -2.2411 -10.6542 0.9806 34 1 -5.9451 -8.5413 1.0730 35 1 -5.1622 -5.9224 -0.1571 36 1 1.6462 -5.5793 1.4117 37 1 2.8710 -3.4758 1.2540 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184602193.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:13 Heat of formation + Delta-G solvation = -10.523691 kcal Electronic energy + Delta-G solvation = -25895.985781 eV Core-core repulsion = 21800.602958 eV Total energy + Delta-G solvation = -4095.382824 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.15941 -40.86936 -39.82683 -38.72634 -37.97712 -36.16424 -35.71432 -34.90302 -33.31170 -31.54689 -31.40073 -30.87423 -28.51117 -26.53406 -24.52871 -24.20004 -23.19845 -22.70556 -21.37801 -20.50021 -19.45704 -19.37625 -19.18576 -18.51092 -17.99417 -17.25082 -17.14587 -16.86426 -16.48034 -16.25418 -15.86634 -15.74161 -15.26644 -14.79762 -14.65219 -14.40072 -13.94710 -13.85467 -13.58681 -13.39857 -13.34171 -12.88668 -12.71082 -12.68519 -12.52911 -12.28980 -12.10609 -11.99011 -11.78401 -11.72803 -11.26606 -10.93022 -10.84732 -10.50916 -10.32320 -9.45176 -8.80353 -8.65190 -6.24858 -2.12663 -0.50456 -0.34480 -0.17031 0.83528 1.21026 1.37598 1.38961 1.50855 1.59265 2.02778 2.17442 2.26488 2.67757 2.71620 3.13048 3.32695 3.36989 3.59226 3.69192 3.76968 4.22901 4.30657 4.41949 4.45293 4.51230 4.56170 4.68082 4.96638 5.01327 5.03529 5.17567 5.27995 5.41693 5.46308 5.73082 5.87012 6.09375 6.14515 6.29194 6.50381 6.59850 6.69654 6.84276 7.06078 7.28100 8.22585 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.033762 B = 0.002280 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.139585 B =12278.126796 C =13003.717049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.026 3.974 3 Si 0.996 3.004 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.254 1.254 7 C -0.506 4.506 8 H 0.082 0.918 9 C 0.074 3.926 10 C -0.193 4.193 11 C -0.093 4.093 12 C -0.013 4.013 13 N -0.622 5.622 14 C 0.530 3.470 15 O -0.543 6.543 16 C -0.103 4.103 17 C -0.053 4.053 18 C -0.050 4.050 19 C 0.019 3.981 20 N -0.019 5.019 21 O -0.200 6.200 22 O -0.156 6.156 23 C -0.084 4.084 24 C 0.165 3.835 25 O -0.482 6.482 26 C -0.092 4.092 27 C -0.231 4.231 28 H 0.293 0.707 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.418 0.582 32 H 0.194 0.806 33 H 0.193 0.807 34 H 0.173 0.827 35 H 0.418 0.582 36 H 0.136 0.864 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.540 -15.679 -0.202 16.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.193 4.193 3 Si 0.816 3.184 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.177 1.177 7 C -0.534 4.534 8 H 0.100 0.900 9 C 0.072 3.928 10 C -0.214 4.214 11 C -0.113 4.113 12 C -0.106 4.106 13 N -0.267 5.267 14 C 0.318 3.682 15 O -0.421 6.421 16 C -0.107 4.107 17 C -0.072 4.072 18 C -0.069 4.069 19 C -0.067 4.067 20 N 0.459 4.541 21 O -0.388 6.388 22 O -0.356 6.356 23 C -0.104 4.104 24 C 0.117 3.883 25 O -0.296 6.296 26 C -0.111 4.111 27 C -0.251 4.251 28 H 0.105 0.895 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.258 0.742 32 H 0.211 0.789 33 H 0.210 0.790 34 H 0.191 0.809 35 H 0.280 0.720 36 H 0.154 0.846 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.879 -14.199 0.269 14.722 hybrid contribution -0.307 0.350 -0.419 0.626 sum -4.185 -13.849 -0.150 14.468 Atomic orbital electron populations 1.69180 1.10150 1.31346 1.32298 1.28411 0.95378 1.05045 0.90513 0.85002 0.79051 0.74615 0.79776 1.18253 1.19280 1.17699 1.20816 0.94618 0.90339 1.47664 0.89967 1.18046 0.92562 0.93176 0.89054 1.21139 0.98527 0.96719 1.04965 1.20602 0.98277 0.93829 0.98562 1.17151 0.95562 0.87909 1.09994 1.42382 1.05729 1.08289 1.70307 1.18362 0.82740 0.88644 0.78446 1.90855 1.67850 1.33656 1.49764 1.20950 0.94187 0.94313 1.01285 1.21635 1.02654 0.87926 0.94941 1.21367 0.89755 1.02066 0.93748 1.20491 0.92827 0.80894 1.12441 1.50701 1.03156 1.04449 0.95782 1.96311 0.89650 1.95909 1.56918 1.96269 1.67373 1.17446 1.54529 1.21322 1.03394 0.88588 0.97071 1.18123 0.88337 0.85532 0.96266 1.84784 1.73394 1.35615 1.35765 1.20422 0.93982 0.97823 0.98923 1.20934 1.02136 0.95223 1.06815 0.89467 0.88177 0.88387 0.74232 0.78870 0.78975 0.80915 0.72048 0.84628 0.87379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.07 10.73 23.22 0.25 -41.82 16 2 C 0.03 1.30 5.59 87.22 0.49 1.79 16 3 Si 1.00 36.97 29.65 68.60 2.03 39.00 16 4 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 5 H -0.27 -9.53 7.11 99.48 0.71 -8.82 16 6 H -0.25 -9.10 7.11 99.48 0.71 -8.39 16 7 C -0.51 -26.67 9.25 24.79 0.23 -26.44 16 8 H 0.08 4.11 7.94 -2.91 -0.02 4.08 16 9 C 0.07 3.93 5.58 -21.25 -0.12 3.81 16 10 C -0.19 -10.41 8.68 22.58 0.20 -10.21 16 11 C -0.09 -4.46 8.59 22.16 0.19 -4.27 16 12 C -0.01 -0.50 6.30 39.00 0.25 -0.25 16 13 N -0.62 -17.58 5.21 -305.99 -1.59 -19.17 16 14 C 0.53 15.81 7.58 86.68 0.66 16.47 16 15 O -0.54 -21.75 12.56 16.97 0.21 -21.53 16 16 C -0.10 -2.04 5.89 -20.01 -0.12 -2.16 16 17 C -0.05 -0.58 9.53 22.52 0.21 -0.36 16 18 C -0.05 -0.54 9.55 22.24 0.21 -0.33 16 19 C 0.02 0.32 6.88 36.41 0.25 0.57 16 20 N -0.02 -0.42 4.98 -46.38 -0.23 -0.65 16 21 O -0.20 -5.03 19.13 3.52 0.07 -4.97 16 22 O -0.16 -3.46 19.13 3.52 0.07 -3.39 16 23 C -0.08 -1.42 9.50 22.34 0.21 -1.21 16 24 C 0.17 3.31 6.72 22.85 0.15 3.46 16 25 O -0.48 -11.15 11.58 -68.70 -0.80 -11.95 16 26 C -0.09 -3.55 9.89 22.16 0.22 -3.33 16 27 C -0.23 -10.59 9.76 22.57 0.22 -10.37 16 28 H 0.29 13.75 8.27 -92.71 -0.77 12.98 16 29 H 0.10 5.76 6.18 -2.91 -0.02 5.74 16 30 H 0.10 4.75 6.22 -2.91 -0.02 4.73 16 31 H 0.42 7.33 6.85 -92.71 -0.63 6.69 16 32 H 0.19 0.71 6.41 -2.91 -0.02 0.69 16 33 H 0.19 1.08 7.56 -2.91 -0.02 1.06 16 34 H 0.17 2.67 7.56 -2.91 -0.02 2.65 16 35 H 0.42 6.50 9.06 -74.06 -0.67 5.83 16 36 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 37 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -73.18 335.75 3.14 -70.04 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: -0.12 Total: 27.27 kcal Atomic # 6 Polarization: -36.09 SS G_CDS: 3.25 Total: -32.84 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: -1.58 Total: -61.64 kcal Atomic # 8 Polarization: -41.39 SS G_CDS: -0.45 Total: -41.84 kcal Atomic # 14 Polarization: 36.97 SS G_CDS: 2.03 Total: 39.00 kcal Total: -73.18 3.14 -70.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184602193.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.513 kcal (2) G-P(sol) polarization free energy of solvation -73.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds