Wall clock time and date at job start Tue Mar 31 2020 14:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.46956 * 110.99700 * 293.79427 * 11 10 9 13 13 C 1.53049 * 109.36630 * 176.81026 * 12 11 10 14 14 N 1.46963 * 109.36171 * 58.40184 * 13 12 11 15 15 C 1.39827 * 110.99998 * 176.81203 * 14 13 12 16 16 C 1.38957 * 120.08113 * 63.52007 * 15 14 13 17 17 Cl 1.73599 * 120.03956 * 0.02562 * 16 15 14 18 18 C 1.38222 * 119.91746 * 179.74705 * 16 15 14 19 19 C 1.38282 * 120.07879 * 0.53343 * 18 16 15 20 20 C 1.38276 * 120.16540 * 359.74727 * 19 18 16 21 21 C 1.38222 * 120.07668 * 359.97438 * 20 19 18 22 22 Cl 1.73600 * 120.03714 * 180.02562 * 21 20 19 23 23 C 1.46948 * 110.88098 * 300.68193 * 14 13 12 24 24 C 1.46961 * 111.00124 * 170.00033 * 11 10 9 25 25 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 29 29 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 30 30 H 1.08999 * 109.49195 * 296.77993 * 12 11 10 31 31 H 1.09002 * 109.48564 * 56.84551 * 12 11 10 32 32 H 1.09000 * 109.49067 * 298.43979 * 13 12 11 33 33 H 1.09001 * 109.49268 * 178.36932 * 13 12 11 34 34 H 1.08004 * 119.96235 * 180.28301 * 18 16 15 35 35 H 1.08003 * 119.91526 * 179.76805 * 19 18 16 36 36 H 1.07998 * 119.95784 * 179.97438 * 20 19 18 37 37 H 1.08999 * 109.48998 * 299.35229 * 23 14 13 38 38 H 1.09002 * 109.48626 * 179.28754 * 23 14 13 39 39 H 1.09001 * 109.48531 * 303.15255 * 24 11 10 40 40 H 1.09000 * 109.48854 * 63.21719 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 7 5.4905 -2.6366 0.0175 12 6 6.0229 -2.0854 -1.2364 13 6 7.5503 -2.0290 -1.1580 14 7 8.0758 -3.3797 -0.9147 15 6 9.4741 -3.3797 -0.9084 16 6 10.1662 -2.6630 0.0603 17 17 9.2959 -1.7663 1.2653 18 6 11.5484 -2.6696 0.0665 19 6 12.2424 -3.3793 -0.8962 20 6 11.5572 -4.0890 -1.8651 21 6 10.1750 -4.0917 -1.8741 22 17 9.3157 -4.9835 -3.0907 23 6 7.5435 -3.9309 0.3391 24 6 6.0161 -3.9873 0.2607 25 1 -0.4849 0.8400 0.0004 26 1 3.8786 -0.6821 -0.8838 27 1 3.8711 -0.6785 0.8962 28 1 3.6545 -3.1486 0.9003 29 1 3.6618 -3.1522 -0.8796 30 1 5.7248 -2.7223 -2.0692 31 1 5.6292 -1.0803 -1.3878 32 1 7.8485 -1.3705 -0.3422 33 1 7.9489 -1.6475 -2.0980 34 1 12.0870 -2.1165 0.8218 35 1 13.3225 -3.3796 -0.8910 36 1 12.1026 -4.6418 -2.6156 37 1 7.8416 -3.2940 1.1719 38 1 7.9372 -4.9360 0.4906 39 1 5.6174 -4.3688 1.2007 40 1 5.7178 -4.6458 -0.5551 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186030294.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:37 Heat of formation + Delta-G solvation = 35.674092 kcal Electronic energy + Delta-G solvation = -23537.785066 eV Core-core repulsion = 20018.514938 eV Total energy + Delta-G solvation = -3519.270128 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.59175 -38.51290 -37.01476 -36.45162 -35.65902 -32.97592 -31.10725 -30.99395 -30.76199 -29.31659 -26.26974 -23.72552 -23.50303 -23.14253 -22.15881 -20.20795 -19.60640 -17.97518 -16.96587 -16.50908 -16.38168 -15.20813 -15.12329 -14.91669 -14.67117 -14.44907 -14.35096 -14.00404 -13.66048 -13.60071 -12.91204 -12.62866 -12.56690 -12.51618 -12.14629 -11.95168 -11.54575 -11.50768 -11.20390 -11.08781 -11.07353 -10.90163 -10.72781 -10.65794 -9.88566 -9.86446 -9.64667 -9.18515 -9.09050 -9.03177 -8.50731 -8.48567 -7.79525 -6.02242 -4.00044 0.58256 0.64938 1.59114 2.05867 3.01463 3.33335 3.40815 3.46792 3.52961 4.35342 4.37576 4.48219 4.53191 4.72075 4.83316 4.98364 5.08466 5.22908 5.31614 5.36217 5.49287 5.52326 5.57437 5.65230 5.72458 5.77996 5.87046 6.02813 6.09164 6.13116 6.21385 6.27565 6.41417 6.78821 6.81483 7.00270 7.19505 7.33737 7.62054 7.66416 7.87731 8.55660 9.02303 9.60470 11.11238 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.019117 B = 0.003282 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.336547 B = 8528.953998 C = 9200.951572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.520 4.520 8 H 0.070 0.930 9 C -0.006 4.006 10 C 0.072 3.928 11 N -0.541 5.541 12 C 0.060 3.940 13 C 0.049 3.951 14 N -0.496 5.496 15 C 0.114 3.886 16 C -0.062 4.062 17 Cl -0.035 7.035 18 C -0.102 4.102 19 C -0.103 4.103 20 C -0.105 4.105 21 C -0.007 4.007 22 Cl -0.040 7.040 23 C 0.045 3.955 24 C 0.061 3.939 25 H 0.263 0.737 26 H 0.010 0.990 27 H 0.024 0.976 28 H 0.067 0.933 29 H 0.027 0.973 30 H 0.039 0.961 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.365 -8.537 -2.047 29.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.188 1.188 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.044 4.044 10 C -0.054 4.054 11 N -0.266 5.266 12 C -0.069 4.069 13 C -0.077 4.077 14 N -0.218 5.218 15 C 0.018 3.982 16 C -0.091 4.091 17 Cl -0.005 7.005 18 C -0.121 4.121 19 C -0.121 4.121 20 C -0.124 4.124 21 C -0.035 4.035 22 Cl -0.011 7.011 23 C -0.082 4.082 24 C -0.068 4.068 25 H 0.072 0.928 26 H 0.029 0.971 27 H 0.042 0.958 28 H 0.085 0.915 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.156 0.844 35 H 0.159 0.841 36 H 0.159 0.841 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 27.989 -8.420 -2.040 29.299 hybrid contribution 0.170 0.857 -0.077 0.877 sum 28.159 -7.563 -2.117 29.234 Atomic orbital electron populations 1.69915 1.06320 1.26870 1.51262 1.24996 0.94697 0.99147 0.94534 0.86780 0.80535 0.83552 0.78488 1.20354 1.21458 1.18761 1.21095 0.89470 0.94472 1.50826 0.91139 1.19561 0.96384 0.91797 0.96657 1.22103 0.83203 1.00274 0.99861 1.62264 1.09927 1.20550 1.33869 1.22119 0.92292 1.01279 0.91184 1.22506 0.95820 0.87623 1.01740 1.59883 1.01500 1.24147 1.36261 1.18470 0.90620 0.95935 0.93163 1.21866 0.93359 0.99466 0.94435 1.98399 1.75158 1.72813 1.54156 1.21136 0.91732 0.99621 0.99659 1.21071 1.00452 0.96634 0.93975 1.21153 0.91711 0.99853 0.99706 1.20783 0.91808 0.97932 0.92948 1.98393 1.77496 1.72803 1.52385 1.22568 0.95577 0.99825 0.90184 1.22058 0.92877 0.90806 1.01042 0.92763 0.97133 0.95810 0.91474 0.95458 0.94236 0.89384 0.91819 0.90731 0.84411 0.84149 0.84132 0.91440 0.90875 0.90290 0.94397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.22 13.96 55.43 0.77 -27.45 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 22.06 27.47 -169.99 -4.67 17.40 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.52 -14.99 9.66 -34.44 -0.33 -15.32 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.15 3.97 -27.88 -0.11 -0.26 16 10 C 0.07 1.48 4.90 -3.83 -0.02 1.46 16 11 N -0.54 -9.43 4.71 -234.47 -1.10 -10.54 16 12 C 0.06 0.97 5.41 -3.77 -0.02 0.95 16 13 C 0.05 0.68 5.26 -3.76 -0.02 0.66 16 14 N -0.50 -6.44 4.07 -170.88 -0.70 -7.14 16 15 C 0.11 1.31 4.72 -83.68 -0.40 0.92 16 16 C -0.06 -0.65 5.97 -39.32 -0.23 -0.88 16 17 Cl -0.03 -0.40 22.70 -51.86 -1.18 -1.58 16 18 C -0.10 -0.80 9.82 -39.57 -0.39 -1.19 16 19 C -0.10 -0.66 10.04 -39.55 -0.40 -1.06 16 20 C -0.10 -0.79 9.82 -39.57 -0.39 -1.18 16 21 C -0.01 -0.07 6.34 -39.32 -0.25 -0.32 16 22 Cl -0.04 -0.43 28.44 -51.86 -1.47 -1.91 16 23 C 0.04 0.58 5.22 -3.77 -0.02 0.56 16 24 C 0.06 0.89 5.61 -3.77 -0.02 0.87 16 25 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 26 H 0.01 0.25 5.93 -51.93 -0.31 -0.06 16 27 H 0.02 0.59 7.19 -51.93 -0.37 0.22 16 28 H 0.07 1.37 8.03 -51.93 -0.42 0.96 16 29 H 0.03 0.57 8.12 -51.93 -0.42 0.15 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 1.53 6.34 -51.93 -0.33 1.20 16 32 H 0.06 0.91 5.15 -51.93 -0.27 0.64 16 33 H 0.07 0.98 8.13 -51.93 -0.42 0.55 16 34 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 35 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16 36 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.07 0.90 4.79 -51.93 -0.25 0.65 16 38 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 39 H 0.08 1.10 8.07 -51.93 -0.42 0.68 16 40 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 340.95 15.07 5.14 5.14 Total: -1.00 -31.23 340.95 -11.23 -42.46 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -5.33 Total: -3.49 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -2.69 Total: -12.90 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: -1.03 Total: -45.12 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.40 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -2.65 Total: -3.48 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.23 -11.23 -42.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186030294.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.136 kcal (2) G-P(sol) polarization free energy of solvation -31.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds