Wall clock time and date at job start Tue Mar 31 2020 14:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.46956 * 110.99700 * 293.79427 * 11 10 9 13 13 C 1.53049 * 109.36630 * 176.81026 * 12 11 10 14 14 N 1.46963 * 109.36171 * 58.40184 * 13 12 11 15 15 C 1.39827 * 110.99998 * 176.81203 * 14 13 12 16 16 C 1.38957 * 120.08113 * 63.52007 * 15 14 13 17 17 Cl 1.73599 * 120.03956 * 0.02562 * 16 15 14 18 18 C 1.38222 * 119.91746 * 179.74705 * 16 15 14 19 19 C 1.38282 * 120.07879 * 0.53343 * 18 16 15 20 20 C 1.38276 * 120.16540 * 359.74727 * 19 18 16 21 21 C 1.38222 * 120.07668 * 359.97438 * 20 19 18 22 22 Cl 1.73600 * 120.03714 * 180.02562 * 21 20 19 23 23 C 1.46948 * 110.88098 * 300.68193 * 14 13 12 24 24 C 1.46961 * 111.00124 * 170.00033 * 11 10 9 25 25 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 29 29 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 30 30 H 1.08999 * 109.49195 * 296.77993 * 12 11 10 31 31 H 1.09002 * 109.48564 * 56.84551 * 12 11 10 32 32 H 1.09000 * 109.49067 * 298.43979 * 13 12 11 33 33 H 1.09001 * 109.49268 * 178.36932 * 13 12 11 34 34 H 1.08004 * 119.96235 * 180.28301 * 18 16 15 35 35 H 1.08003 * 119.91526 * 179.76805 * 19 18 16 36 36 H 1.07998 * 119.95784 * 179.97438 * 20 19 18 37 37 H 1.08999 * 109.48998 * 299.35229 * 23 14 13 38 38 H 1.09002 * 109.48626 * 179.28754 * 23 14 13 39 39 H 1.09001 * 109.48531 * 303.15255 * 24 11 10 40 40 H 1.09000 * 109.48854 * 63.21719 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 7 5.4905 -2.6366 0.0175 12 6 6.0229 -2.0854 -1.2364 13 6 7.5503 -2.0290 -1.1580 14 7 8.0758 -3.3797 -0.9147 15 6 9.4741 -3.3797 -0.9084 16 6 10.1662 -2.6630 0.0603 17 17 9.2959 -1.7663 1.2653 18 6 11.5484 -2.6696 0.0665 19 6 12.2424 -3.3793 -0.8962 20 6 11.5572 -4.0890 -1.8651 21 6 10.1750 -4.0917 -1.8741 22 17 9.3157 -4.9835 -3.0907 23 6 7.5435 -3.9309 0.3391 24 6 6.0161 -3.9873 0.2607 25 1 -0.4849 0.8400 0.0004 26 1 3.8786 -0.6821 -0.8838 27 1 3.8711 -0.6785 0.8962 28 1 3.6545 -3.1486 0.9003 29 1 3.6618 -3.1522 -0.8796 30 1 5.7248 -2.7223 -2.0692 31 1 5.6292 -1.0803 -1.3878 32 1 7.8485 -1.3705 -0.3422 33 1 7.9489 -1.6475 -2.0980 34 1 12.0870 -2.1165 0.8218 35 1 13.3225 -3.3796 -0.8910 36 1 12.1026 -4.6418 -2.6156 37 1 7.8416 -3.2940 1.1719 38 1 7.9372 -4.9360 0.4906 39 1 5.6174 -4.3688 1.2007 40 1 5.7178 -4.6458 -0.5551 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186030294.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:37 Heat of formation + Delta-G solvation = 16.530474 kcal Electronic energy + Delta-G solvation = -23538.615195 eV Core-core repulsion = 20018.514938 eV Total energy + Delta-G solvation = -3520.100257 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.45042 -39.56069 -37.80784 -37.19997 -36.89447 -35.01112 -32.65971 -31.94521 -31.64701 -30.57733 -27.67126 -25.30904 -24.68966 -23.90175 -23.01048 -21.92995 -20.85021 -19.09564 -18.66124 -17.47114 -17.13870 -16.54105 -16.24164 -16.07687 -16.05234 -15.51626 -15.36336 -15.28729 -14.89732 -14.76047 -14.54718 -14.29136 -13.47688 -13.39790 -13.30829 -13.17220 -12.86408 -12.74444 -12.45092 -12.35900 -12.14933 -12.03835 -11.82642 -11.76986 -11.69555 -11.63914 -11.40645 -11.35876 -10.75814 -9.79409 -9.73340 -9.50647 -9.19069 -8.30605 -6.34557 -0.07234 -0.01074 0.84910 1.32928 1.34886 1.37197 1.50309 2.35757 2.38955 2.61529 2.97606 3.05051 3.73035 3.84223 4.00925 4.04267 4.16405 4.18979 4.21696 4.33106 4.38449 4.41227 4.50022 4.53727 4.63167 4.77362 4.84938 4.90822 4.95650 5.02900 5.04907 5.11195 5.20593 5.28101 5.46315 5.52401 5.62616 5.74865 6.03763 6.16508 6.22760 6.30301 6.73046 7.30081 8.86237 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.019117 B = 0.003282 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.336547 B = 8528.953998 C = 9200.951572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.007 3.993 3 Si 0.950 3.050 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.249 1.249 7 C -0.532 4.532 8 H 0.032 0.968 9 C 0.003 3.997 10 C 0.085 3.915 11 N -0.543 5.543 12 C 0.060 3.940 13 C 0.059 3.941 14 N -0.500 5.500 15 C 0.090 3.910 16 C -0.073 4.073 17 Cl -0.052 7.052 18 C -0.100 4.100 19 C -0.086 4.086 20 C -0.100 4.100 21 C -0.019 4.019 22 Cl -0.054 7.054 23 C 0.052 3.948 24 C 0.061 3.939 25 H 0.267 0.733 26 H 0.017 0.983 27 H 0.020 0.980 28 H 0.063 0.937 29 H 0.017 0.983 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.158 0.842 35 H 0.180 0.820 36 H 0.165 0.835 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.348 -8.075 -2.117 33.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.190 4.190 3 Si 0.773 3.227 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.173 1.173 7 C -0.571 4.571 8 H 0.050 0.950 9 C -0.035 4.035 10 C -0.043 4.043 11 N -0.268 5.268 12 C -0.068 4.068 13 C -0.068 4.068 14 N -0.221 5.221 15 C -0.006 4.006 16 C -0.102 4.102 17 Cl -0.022 7.022 18 C -0.119 4.119 19 C -0.104 4.104 20 C -0.119 4.119 21 C -0.047 4.047 22 Cl -0.025 7.025 23 C -0.075 4.075 24 C -0.067 4.067 25 H 0.076 0.924 26 H 0.035 0.965 27 H 0.039 0.961 28 H 0.082 0.918 29 H 0.035 0.965 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.176 0.824 35 H 0.197 0.803 36 H 0.182 0.818 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 32.000 -7.980 -2.112 33.048 hybrid contribution -1.008 0.605 -0.072 1.178 sum 30.992 -7.375 -2.184 31.933 Atomic orbital electron populations 1.70062 1.08259 1.28195 1.52624 1.25964 0.95579 1.03420 0.94025 0.85656 0.79472 0.78277 0.79256 1.19034 1.20835 1.17263 1.21416 0.91924 0.93196 1.50523 0.94961 1.19409 0.93306 0.94234 0.96534 1.21788 0.85506 0.97708 0.99249 1.62204 1.07645 1.22399 1.34536 1.22109 0.94174 1.00188 0.90358 1.22348 0.93786 0.88545 1.02081 1.59784 1.03031 1.23274 1.36058 1.18505 0.89624 0.97846 0.94640 1.21937 0.94264 0.99858 0.94146 1.98390 1.75794 1.73251 1.54806 1.21463 0.90718 0.99427 1.00308 1.21522 1.02218 0.94462 0.92212 1.21505 0.90629 0.99470 1.00262 1.20967 0.92795 0.98274 0.92663 1.98387 1.78035 1.73154 1.52924 1.22487 0.93923 1.00568 0.90483 1.22123 0.94342 0.89081 1.01126 0.92434 0.96483 0.96125 0.91818 0.96502 0.94982 0.90654 0.92016 0.89993 0.82421 0.80313 0.81781 0.91514 0.89653 0.89608 0.94916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.76 13.96 21.45 0.30 -60.46 16 2 C 0.01 0.42 5.47 84.66 0.46 0.88 16 3 Si 0.95 45.50 27.47 68.60 1.88 47.38 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 6 H -0.25 -11.28 6.54 99.48 0.65 -10.63 16 7 C -0.53 -31.56 9.66 25.60 0.25 -31.31 16 8 H 0.03 2.09 7.99 -2.91 -0.02 2.07 16 9 C 0.00 0.14 3.97 29.85 0.12 0.26 16 10 C 0.08 3.54 4.90 86.30 0.42 3.97 16 11 N -0.54 -18.87 4.71 -895.72 -4.22 -23.08 16 12 C 0.06 1.95 5.41 86.31 0.47 2.42 16 13 C 0.06 1.59 5.26 86.31 0.45 2.04 16 14 N -0.50 -12.47 4.07 -694.55 -2.83 -15.29 16 15 C 0.09 1.90 4.72 38.21 0.18 2.08 16 16 C -0.07 -1.36 5.97 22.44 0.13 -1.23 16 17 Cl -0.05 -1.11 22.70 -2.72 -0.06 -1.18 16 18 C -0.10 -1.22 9.82 22.28 0.22 -1.00 16 19 C -0.09 -0.72 10.04 22.29 0.22 -0.50 16 20 C -0.10 -1.15 9.82 22.28 0.22 -0.93 16 21 C -0.02 -0.35 6.34 22.44 0.14 -0.21 16 22 Cl -0.05 -1.10 28.44 -2.72 -0.08 -1.18 16 23 C 0.05 1.29 5.22 86.31 0.45 1.74 16 24 C 0.06 1.79 5.61 86.31 0.48 2.27 16 25 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 26 H 0.02 0.81 5.93 -2.38 -0.01 0.79 16 27 H 0.02 1.01 7.19 -2.39 -0.02 1.00 16 28 H 0.06 2.67 8.03 -2.38 -0.02 2.65 16 29 H 0.02 0.73 8.12 -2.39 -0.02 0.71 16 30 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.08 2.61 6.34 -2.39 -0.02 2.59 16 32 H 0.06 1.71 5.15 -2.39 -0.01 1.70 16 33 H 0.08 2.08 8.13 -2.39 -0.02 2.06 16 34 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 35 H 0.18 0.17 8.06 -2.91 -0.02 0.15 16 36 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 37 H 0.07 1.71 4.79 -2.39 -0.01 1.70 16 38 H 0.09 1.93 8.13 -2.39 -0.02 1.91 16 39 H 0.09 2.35 8.07 -2.39 -0.02 2.33 16 40 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -69.00 340.95 0.22 -68.78 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: 0.99 Total: 4.54 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: 4.23 Total: -19.51 kcal Atomic # 7 Polarization: -92.09 SS G_CDS: -6.75 Total: -98.84 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.88 Total: 47.38 kcal Atomic # 17 Polarization: -2.22 SS G_CDS: -0.14 Total: -2.36 kcal Total: -69.00 0.22 -68.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186030294.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.313 kcal (2) G-P(sol) polarization free energy of solvation -69.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds