Wall clock time and date at job start Tue Mar 31 2020 16:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46864 * 2 1 4 4 H 1.09001 * 109.47174 * 306.97812 * 3 2 1 5 5 C 1.50702 * 109.47158 * 186.97565 * 3 2 1 6 6 H 1.08006 * 119.99629 * 245.83563 * 5 3 2 7 7 C 1.37879 * 119.99958 * 65.83256 * 5 3 2 8 8 N 1.31515 * 120.00006 * 10.90461 * 7 5 3 9 9 Si 1.86803 * 119.99799 * 190.90567 * 7 5 3 10 10 H 1.48498 * 109.47188 * 269.99856 * 9 7 5 11 11 H 1.48500 * 109.47074 * 30.00262 * 9 7 5 12 12 H 1.48505 * 109.47017 * 150.00007 * 9 7 5 13 13 N 1.46503 * 109.47222 * 66.97583 * 3 2 1 14 14 S 1.65596 * 120.00340 * 212.77386 * 13 3 2 15 15 O 1.42101 * 106.40364 * 175.26072 * 14 13 3 16 16 O 1.42095 * 106.40048 * 308.18425 * 14 13 3 17 17 C 1.76207 * 107.21606 * 61.72173 * 14 13 3 18 18 C 1.38256 * 120.00053 * 93.57952 * 17 14 13 19 19 C 1.38211 * 119.99666 * 179.97438 * 18 17 14 20 20 C 1.38253 * 120.00663 * 0.02562 * 19 18 17 21 21 N 1.48019 * 120.00585 * 179.97438 * 20 19 18 22 22 O 1.21797 * 119.99692 * 353.69038 * 21 20 19 23 23 O 1.21802 * 120.00237 * 173.68268 * 21 20 19 24 24 C 1.38219 * 119.99401 * 0.02562 * 20 19 18 25 25 C 1.50706 * 119.99559 * 179.97438 * 24 20 19 26 26 C 1.38213 * 119.99756 * 273.30990 * 17 14 13 27 27 H 1.08999 * 109.46836 * 184.56852 * 1 2 3 28 28 H 1.09001 * 109.47141 * 304.57027 * 1 2 3 29 29 H 1.09003 * 109.46864 * 64.57336 * 1 2 3 30 30 H 1.08997 * 109.47463 * 240.00137 * 2 1 3 31 31 H 1.08994 * 109.47229 * 119.99875 * 2 1 3 32 32 H 0.96997 * 120.00066 * 357.14952 * 8 7 5 33 33 H 0.97005 * 119.99743 * 32.77056 * 13 3 2 34 34 H 1.07998 * 120.00084 * 0.02562 * 18 17 14 35 35 H 1.08008 * 119.99665 * 180.02562 * 19 18 17 36 36 H 1.08991 * 109.47438 * 83.05378 * 25 24 20 37 37 H 1.09004 * 109.46756 * 203.05673 * 25 24 20 38 38 H 1.08996 * 109.47021 * 323.04977 * 25 24 20 39 39 H 1.07999 * 120.00213 * 359.97438 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5783 1.9911 -0.8210 5 6 3.5371 1.4461 -0.1726 6 1 4.1721 1.7955 0.6282 7 6 4.0961 1.0034 -1.3526 8 7 3.3319 0.7819 -2.3998 9 14 5.9389 0.7183 -1.4640 10 1 6.6074 1.9686 -1.9055 11 1 6.4599 0.3224 -0.1309 12 1 6.2141 -0.3629 -2.4440 13 7 1.6934 2.0830 1.2712 14 16 1.3510 3.7026 1.3162 15 8 0.9503 3.9912 2.6486 16 8 2.4329 4.3595 0.6704 17 6 -0.0664 3.9643 0.3026 18 6 -1.3288 3.9640 0.8662 19 6 -2.4405 4.1699 0.0712 20 6 -2.2903 4.3756 -1.2877 21 7 -3.4809 4.5954 -2.1392 22 8 -4.5974 4.4815 -1.6660 23 8 -3.3441 4.8904 -3.3130 24 6 -1.0282 4.3748 -1.8512 25 6 -0.8644 4.5985 -3.3326 26 6 0.0844 4.1755 -1.0550 27 1 -0.3633 -1.0244 0.0819 28 1 -0.3633 0.5831 0.8462 29 1 -0.3633 0.4412 -0.9282 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8899 32 1 2.3705 0.8901 -2.3302 33 1 1.6645 1.5584 2.0866 34 1 -1.4463 3.8037 1.9277 35 1 -3.4268 4.1700 0.5115 36 1 -0.8762 5.6680 -3.5421 37 1 0.0844 4.1743 -3.6613 38 1 -1.6827 4.1147 -3.8657 39 1 1.0709 4.1805 -1.4945 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186430377.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:02 Heat of formation + Delta-G solvation = -57.973288 kcal Electronic energy + Delta-G solvation = -26870.843806 eV Core-core repulsion = 22908.847365 eV Total energy + Delta-G solvation = -3961.996441 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.45184 -39.71725 -37.05805 -36.85614 -36.44538 -35.56644 -33.39152 -32.43170 -32.27141 -31.05477 -28.08323 -26.41746 -26.32401 -23.28914 -23.12616 -22.59702 -20.67597 -19.54391 -19.08761 -18.78408 -17.87498 -17.76541 -17.33873 -16.84026 -16.20634 -15.39627 -15.04017 -14.35853 -14.19163 -14.06574 -13.85505 -13.67884 -13.50336 -13.27493 -12.95834 -12.64801 -12.55670 -11.92988 -11.88986 -11.76593 -11.69494 -11.59339 -11.54267 -11.35625 -11.20902 -10.87862 -10.78067 -10.69466 -10.35148 -10.29309 -10.20986 -10.13072 -9.81579 -9.36397 -8.58299 -8.21245 -6.54401 -4.27503 -0.58185 0.59698 0.67462 0.98041 1.17718 2.76422 3.38038 3.38896 3.40506 3.55866 3.91186 4.00362 4.09472 4.35773 4.41500 4.70661 4.81530 4.98507 5.08151 5.12812 5.27278 5.37506 5.44763 5.61540 5.70447 5.71410 5.72934 5.85386 5.86867 5.99817 6.05570 6.33823 6.34621 6.44903 6.59585 7.00678 7.10831 7.47299 7.59989 7.83223 8.32677 8.64051 9.39904 10.81213 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.014079 B = 0.004619 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.253912 B = 6060.286996 C = 6794.591049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C 0.267 3.733 4 H 0.031 0.969 5 C -0.606 4.606 6 H 0.062 0.938 7 C 0.028 3.972 8 N -0.905 5.905 9 Si 1.068 2.932 10 H -0.286 1.286 11 H -0.287 1.287 12 H -0.284 1.284 13 N -1.091 6.091 14 S 2.687 3.313 15 O -0.973 6.973 16 O -0.930 6.930 17 C -0.623 4.623 18 C -0.031 4.031 19 C -0.077 4.077 20 C -0.007 4.007 21 N 0.028 4.972 22 O -0.164 6.164 23 O -0.149 6.149 24 C -0.032 4.032 25 C -0.136 4.136 26 C -0.015 4.015 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.268 0.732 33 H 0.410 0.590 34 H 0.162 0.838 35 H 0.159 0.841 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.611 4.044 3.496 10.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.167 4.167 3 C 0.162 3.838 4 H 0.048 0.952 5 C -0.645 4.645 6 H 0.080 0.920 7 C -0.177 4.177 8 N -0.540 5.540 9 Si 0.896 3.104 10 H -0.212 1.212 11 H -0.213 1.213 12 H -0.210 1.210 13 N -0.853 5.853 14 S 2.771 3.229 15 O -0.963 6.963 16 O -0.920 6.920 17 C -0.705 4.705 18 C -0.051 4.051 19 C -0.097 4.097 20 C -0.090 4.090 21 N 0.546 4.454 22 O -0.378 6.378 23 O -0.365 6.365 24 C -0.034 4.034 25 C -0.192 4.192 26 C -0.034 4.034 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.245 0.755 34 H 0.179 0.821 35 H 0.177 0.823 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.117 0.883 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.426 4.252 3.115 9.107 hybrid contribution -2.261 0.033 0.744 2.381 sum -9.687 4.285 3.859 11.274 Atomic orbital electron populations 1.21873 0.98338 1.00318 1.00503 1.21943 0.92668 0.99436 1.02701 1.18720 0.96375 0.89914 0.78745 0.95169 1.22262 0.90613 1.47437 1.04207 0.91999 1.25769 1.07012 0.93390 0.91539 1.70848 1.06756 1.46586 1.29835 0.83552 0.74128 0.77072 0.75662 1.21238 1.21292 1.20955 1.55378 1.84118 1.27886 1.17924 1.02365 0.73670 0.73859 0.72984 1.93550 1.83805 1.84227 1.34744 1.93654 1.48518 1.73392 1.76429 1.32027 1.19368 1.09421 1.09682 1.20938 0.89472 0.93749 1.00896 1.21098 1.01629 0.96515 0.90409 1.21221 0.85182 1.11016 0.91620 1.43611 1.02405 0.98064 1.01302 1.94535 1.10758 1.55231 1.77240 1.94490 1.92721 1.49187 1.00096 1.20062 0.89943 0.94598 0.98839 1.21369 1.05273 1.04094 0.88441 1.21148 0.99678 0.91540 0.91077 0.93756 0.93711 0.93828 0.90262 0.92549 0.92090 0.75549 0.82061 0.82332 0.89093 0.89733 0.88260 0.81470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.86 37.16 0.37 -2.05 16 2 C -0.13 -2.43 5.23 -26.73 -0.14 -2.57 16 3 C 0.27 5.53 1.77 -69.08 -0.12 5.41 16 4 H 0.03 0.65 5.98 -51.93 -0.31 0.34 16 5 C -0.61 -15.04 8.75 -34.44 -0.30 -15.34 16 6 H 0.06 1.59 7.84 -52.48 -0.41 1.18 16 7 C 0.03 0.72 5.11 -17.82 -0.09 0.63 16 8 N -0.90 -24.09 13.03 55.43 0.72 -23.37 16 9 Si 1.07 23.52 29.92 -169.99 -5.09 18.43 16 10 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.05 7.11 56.52 0.40 -5.65 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 N -1.09 -18.95 4.94 -5.88 -0.03 -18.98 16 14 S 2.69 45.52 5.67 -107.50 -0.61 44.91 16 15 O -0.97 -16.83 17.20 -57.17 -0.98 -17.81 16 16 O -0.93 -19.27 17.19 -57.17 -0.98 -20.25 16 17 C -0.62 -9.10 5.70 -39.58 -0.23 -9.33 16 18 C -0.03 -0.38 9.53 -39.58 -0.38 -0.76 16 19 C -0.08 -0.91 9.56 -39.59 -0.38 -1.29 16 20 C -0.01 -0.10 6.83 -79.95 -0.55 -0.65 16 21 N 0.03 0.40 4.45 33.96 0.15 0.55 16 22 O -0.16 -2.35 18.47 -29.46 -0.54 -2.89 16 23 O -0.15 -2.12 15.36 -29.46 -0.45 -2.57 16 24 C -0.03 -0.44 5.88 -104.62 -0.62 -1.06 16 25 C -0.14 -1.62 8.68 36.01 0.31 -1.31 16 26 C -0.02 -0.22 8.18 -39.58 -0.32 -0.55 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.63 7.70 -51.93 -0.40 0.23 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.08 1.71 6.52 -51.93 -0.34 1.37 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.27 6.91 6.22 -40.82 -0.25 6.66 16 33 H 0.41 6.14 8.81 -34.47 -0.30 5.84 16 34 H 0.16 1.61 7.54 -52.49 -0.40 1.22 16 35 H 0.16 1.48 7.63 -52.48 -0.40 1.08 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.08 0.98 8.04 -51.93 -0.42 0.56 16 38 H 0.10 1.19 5.87 -51.93 -0.30 0.89 16 39 H 0.17 2.57 7.61 -52.49 -0.40 2.17 16 LS Contribution 344.96 15.07 5.20 5.20 Total: -1.00 -30.31 344.96 -9.48 -39.78 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -4.42 Total: 5.85 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: -2.44 Total: -28.85 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 0.84 Total: -41.80 kcal Atomic # 8 Polarization: -40.56 SS G_CDS: -2.96 Total: -43.53 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -5.09 Total: 18.43 kcal Atomic # 16 Polarization: 45.52 SS G_CDS: -0.61 Total: 44.91 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.31 -9.48 -39.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186430377.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.189 kcal (2) G-P(sol) polarization free energy of solvation -30.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds