Wall clock time and date at job start Tue Mar 31 2020 16:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46864 * 2 1 4 4 H 1.09001 * 109.47174 * 306.97812 * 3 2 1 5 5 C 1.50702 * 109.47158 * 186.97565 * 3 2 1 6 6 H 1.08006 * 119.99629 * 245.83563 * 5 3 2 7 7 C 1.37879 * 119.99958 * 65.83256 * 5 3 2 8 8 N 1.31515 * 120.00006 * 10.90461 * 7 5 3 9 9 Si 1.86803 * 119.99799 * 190.90567 * 7 5 3 10 10 H 1.48498 * 109.47188 * 269.99856 * 9 7 5 11 11 H 1.48500 * 109.47074 * 30.00262 * 9 7 5 12 12 H 1.48505 * 109.47017 * 150.00007 * 9 7 5 13 13 N 1.46503 * 109.47222 * 66.97583 * 3 2 1 14 14 S 1.65596 * 120.00340 * 212.77386 * 13 3 2 15 15 O 1.42101 * 106.40364 * 175.26072 * 14 13 3 16 16 O 1.42095 * 106.40048 * 308.18425 * 14 13 3 17 17 C 1.76207 * 107.21606 * 61.72173 * 14 13 3 18 18 C 1.38256 * 120.00053 * 93.57952 * 17 14 13 19 19 C 1.38211 * 119.99666 * 179.97438 * 18 17 14 20 20 C 1.38253 * 120.00663 * 0.02562 * 19 18 17 21 21 N 1.48019 * 120.00585 * 179.97438 * 20 19 18 22 22 O 1.21797 * 119.99692 * 353.69038 * 21 20 19 23 23 O 1.21802 * 120.00237 * 173.68268 * 21 20 19 24 24 C 1.38219 * 119.99401 * 0.02562 * 20 19 18 25 25 C 1.50706 * 119.99559 * 179.97438 * 24 20 19 26 26 C 1.38213 * 119.99756 * 273.30990 * 17 14 13 27 27 H 1.08999 * 109.46836 * 184.56852 * 1 2 3 28 28 H 1.09001 * 109.47141 * 304.57027 * 1 2 3 29 29 H 1.09003 * 109.46864 * 64.57336 * 1 2 3 30 30 H 1.08997 * 109.47463 * 240.00137 * 2 1 3 31 31 H 1.08994 * 109.47229 * 119.99875 * 2 1 3 32 32 H 0.96997 * 120.00066 * 357.14952 * 8 7 5 33 33 H 0.97005 * 119.99743 * 32.77056 * 13 3 2 34 34 H 1.07998 * 120.00084 * 0.02562 * 18 17 14 35 35 H 1.08008 * 119.99665 * 180.02562 * 19 18 17 36 36 H 1.08991 * 109.47438 * 83.05378 * 25 24 20 37 37 H 1.09004 * 109.46756 * 203.05673 * 25 24 20 38 38 H 1.08996 * 109.47021 * 323.04977 * 25 24 20 39 39 H 1.07999 * 120.00213 * 359.97438 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5783 1.9911 -0.8210 5 6 3.5371 1.4461 -0.1726 6 1 4.1721 1.7955 0.6282 7 6 4.0961 1.0034 -1.3526 8 7 3.3319 0.7819 -2.3998 9 14 5.9389 0.7183 -1.4640 10 1 6.6074 1.9686 -1.9055 11 1 6.4599 0.3224 -0.1309 12 1 6.2141 -0.3629 -2.4440 13 7 1.6934 2.0830 1.2712 14 16 1.3510 3.7026 1.3162 15 8 0.9503 3.9912 2.6486 16 8 2.4329 4.3595 0.6704 17 6 -0.0664 3.9643 0.3026 18 6 -1.3288 3.9640 0.8662 19 6 -2.4405 4.1699 0.0712 20 6 -2.2903 4.3756 -1.2877 21 7 -3.4809 4.5954 -2.1392 22 8 -4.5974 4.4815 -1.6660 23 8 -3.3441 4.8904 -3.3130 24 6 -1.0282 4.3748 -1.8512 25 6 -0.8644 4.5985 -3.3326 26 6 0.0844 4.1755 -1.0550 27 1 -0.3633 -1.0244 0.0819 28 1 -0.3633 0.5831 0.8462 29 1 -0.3633 0.4412 -0.9282 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8899 32 1 2.3705 0.8901 -2.3302 33 1 1.6645 1.5584 2.0866 34 1 -1.4463 3.8037 1.9277 35 1 -3.4268 4.1700 0.5115 36 1 -0.8762 5.6680 -3.5421 37 1 0.0844 4.1743 -3.6613 38 1 -1.6827 4.1147 -3.8657 39 1 1.0709 4.1805 -1.4945 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186430377.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:01 Heat of formation + Delta-G solvation = -77.042034 kcal Electronic energy + Delta-G solvation = -26871.670689 eV Core-core repulsion = 22908.847365 eV Total energy + Delta-G solvation = -3962.823324 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.53331 -40.78394 -38.52581 -38.02460 -37.94427 -37.03920 -34.43225 -34.24035 -33.35502 -32.48492 -29.11548 -28.10275 -27.44274 -25.00160 -24.22412 -23.65834 -22.22040 -20.81461 -20.23628 -19.89152 -19.34883 -18.95642 -18.81264 -18.29902 -17.42250 -16.78570 -16.08142 -15.81156 -15.65876 -15.26737 -15.24018 -14.91647 -14.85020 -14.72031 -14.08844 -13.98197 -13.63954 -13.37636 -13.32614 -13.23618 -13.07810 -12.85465 -12.69300 -12.63758 -12.55297 -12.42689 -12.35739 -11.92744 -11.89992 -11.77699 -11.73660 -11.48065 -11.24976 -10.46090 -10.37926 -9.95472 -8.53797 -6.26702 -1.68114 -0.75711 -0.34957 -0.13399 0.10092 1.58171 1.63017 1.66382 1.81078 2.05721 2.55950 2.61655 2.93649 3.09495 3.19549 3.24172 3.64508 3.72664 3.90515 4.04477 4.23754 4.27540 4.31902 4.34389 4.45032 4.50616 4.56467 4.62023 4.72444 4.85444 4.88712 4.97262 5.11183 5.14952 5.30431 5.47634 5.52638 6.01637 6.17986 6.36993 6.38705 6.67059 7.45230 8.82894 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.014079 B = 0.004619 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.253912 B = 6060.286996 C = 6794.591049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C 0.270 3.730 4 H 0.024 0.976 5 C -0.616 4.616 6 H 0.046 0.954 7 C -0.014 4.014 8 N -0.928 5.928 9 Si 1.100 2.900 10 H -0.284 1.284 11 H -0.273 1.273 12 H -0.282 1.282 13 N -1.089 6.089 14 S 2.704 3.296 15 O -0.974 6.974 16 O -0.976 6.976 17 C -0.625 4.625 18 C -0.023 4.023 19 C -0.062 4.062 20 C -0.014 4.014 21 N 0.028 4.972 22 O -0.161 6.161 23 O -0.158 6.158 24 C -0.036 4.036 25 C -0.136 4.136 26 C -0.031 4.031 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.037 0.963 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.264 0.736 33 H 0.422 0.578 34 H 0.191 0.809 35 H 0.191 0.809 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.387 3.932 4.738 12.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C 0.164 3.836 4 H 0.042 0.958 5 C -0.656 4.656 6 H 0.065 0.935 7 C -0.215 4.215 8 N -0.565 5.565 9 Si 0.924 3.076 10 H -0.210 1.210 11 H -0.199 1.199 12 H -0.208 1.208 13 N -0.851 5.851 14 S 2.792 3.208 15 O -0.964 6.964 16 O -0.966 6.966 17 C -0.711 4.711 18 C -0.043 4.043 19 C -0.082 4.082 20 C -0.097 4.097 21 N 0.545 4.455 22 O -0.376 6.376 23 O -0.373 6.373 24 C -0.038 4.038 25 C -0.192 4.192 26 C -0.050 4.050 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.258 0.742 34 H 0.208 0.792 35 H 0.208 0.792 36 H 0.122 0.878 37 H 0.101 0.899 38 H 0.118 0.882 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.169 4.133 4.389 10.973 hybrid contribution -1.802 0.126 0.402 1.850 sum -10.971 4.259 4.791 12.706 Atomic orbital electron populations 1.21797 0.95460 1.01919 1.01123 1.21776 0.95217 0.97605 1.01567 1.18494 0.94104 0.91181 0.79836 0.95810 1.22591 0.93007 1.46515 1.03453 0.93545 1.26733 1.09692 0.93378 0.91683 1.70915 1.06751 1.48379 1.30430 0.83134 0.71148 0.77029 0.76288 1.21033 1.19856 1.20787 1.55136 1.84591 1.27991 1.17418 1.01502 0.73549 0.73067 0.72687 1.93541 1.83893 1.84063 1.34936 1.93602 1.51435 1.74273 1.77273 1.31569 1.19241 1.11171 1.09134 1.21287 0.88286 0.92426 1.02271 1.21465 1.02877 0.94356 0.89481 1.21390 0.84773 1.11242 0.92315 1.43684 1.02506 0.97974 1.01339 1.94525 1.10924 1.54984 1.77172 1.94498 1.92783 1.49652 1.00320 1.20118 0.89842 0.94469 0.99387 1.21410 1.05156 1.04953 0.87662 1.21031 0.99516 0.92970 0.91508 0.91914 0.91609 0.94420 0.93197 0.91889 0.92550 0.74210 0.79188 0.79175 0.87799 0.89936 0.88198 0.83050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.29 9.86 71.98 0.71 -3.58 16 2 C -0.12 -4.56 5.23 30.60 0.16 -4.40 16 3 C 0.27 11.19 1.77 44.25 0.08 11.26 16 4 H 0.02 1.05 5.98 -2.39 -0.01 1.03 16 5 C -0.62 -31.08 8.75 25.60 0.22 -30.85 16 6 H 0.05 2.43 7.84 -2.91 -0.02 2.40 16 7 C -0.01 -0.74 5.11 84.65 0.43 -0.30 16 8 N -0.93 -50.44 13.03 21.45 0.28 -50.16 16 9 Si 1.10 47.82 29.92 68.60 2.05 49.88 16 10 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 12 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 13 N -1.09 -36.97 4.94 -172.51 -0.85 -37.82 16 14 S 2.70 89.77 5.67 -56.49 -0.32 89.45 16 15 O -0.97 -31.91 17.20 -128.00 -2.20 -34.11 16 16 O -0.98 -41.25 17.19 -128.00 -2.20 -43.45 16 17 C -0.63 -17.40 5.70 22.27 0.13 -17.28 16 18 C -0.02 -0.49 9.53 22.27 0.21 -0.28 16 19 C -0.06 -1.25 9.56 22.27 0.21 -1.04 16 20 C -0.01 -0.35 6.83 36.37 0.25 -0.10 16 21 N 0.03 0.72 4.45 -46.46 -0.21 0.51 16 22 O -0.16 -4.19 18.47 18.89 0.35 -3.84 16 23 O -0.16 -4.27 15.36 18.88 0.29 -3.98 16 24 C -0.04 -0.95 5.88 -19.86 -0.12 -1.07 16 25 C -0.14 -3.20 8.68 71.24 0.62 -2.58 16 26 C -0.03 -0.90 8.18 22.27 0.18 -0.72 16 27 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 1.65 7.70 -2.39 -0.02 1.63 16 29 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 2.17 6.52 -2.39 -0.02 2.16 16 31 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.26 14.01 6.22 -92.71 -0.58 13.43 16 33 H 0.42 12.02 8.81 -96.74 -0.85 11.16 16 34 H 0.19 2.94 7.54 -2.91 -0.02 2.92 16 35 H 0.19 2.63 7.63 -2.91 -0.02 2.60 16 36 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.08 1.95 8.04 -2.38 -0.02 1.93 16 38 H 0.10 2.35 5.87 -2.39 -0.01 2.33 16 39 H 0.15 4.89 7.61 -2.91 -0.02 4.87 16 Total: -1.00 -64.96 344.96 0.72 -64.24 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.44 Total: 20.21 kcal Atomic # 6 Polarization: -54.03 SS G_CDS: 3.09 Total: -50.94 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -0.78 Total: -87.47 kcal Atomic # 8 Polarization: -81.61 SS G_CDS: -3.76 Total: -85.37 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.05 Total: 49.88 kcal Atomic # 16 Polarization: 89.77 SS G_CDS: -0.32 Total: 89.45 kcal Total: -64.96 0.72 -64.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186430377.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.801 kcal (2) G-P(sol) polarization free energy of solvation -64.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds