Wall clock time and date at job start Tue Mar 31 2020 15:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38263 * 119.99758 * 2 1 4 4 C 1.38215 * 119.99775 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.00401 * 0.08145 * 4 3 2 6 6 C 1.50697 * 120.00398 * 179.97438 * 5 4 3 7 7 C 1.38212 * 119.99830 * 0.02562 * 5 4 3 8 8 S 1.76200 * 120.00137 * 179.97438 * 7 5 4 9 9 O 1.42100 * 106.40149 * 22.35041 * 8 7 5 10 10 O 1.42100 * 106.40193 * 155.26803 * 8 7 5 11 11 N 1.65599 * 107.22060 * 268.80809 * 8 7 5 12 12 C 1.46501 * 119.99860 * 61.26225 * 11 8 7 13 13 H 1.08996 * 109.47090 * 335.87999 * 12 11 8 14 14 C 1.52999 * 109.47148 * 95.88296 * 12 11 8 15 15 C 1.50700 * 109.47084 * 215.88140 * 12 11 8 16 16 H 1.08009 * 119.99862 * 0.02562 * 15 12 11 17 17 C 1.37877 * 120.00071 * 179.97438 * 15 12 11 18 18 N 1.31517 * 119.99746 * 179.97438 * 17 15 12 19 19 Si 1.86796 * 120.00016 * 0.02562 * 17 15 12 20 20 H 1.48495 * 109.47149 * 89.99686 * 19 17 15 21 21 H 1.48501 * 109.47186 * 209.99782 * 19 17 15 22 22 H 1.48502 * 109.47033 * 329.99732 * 19 17 15 23 23 C 1.38214 * 120.00454 * 180.08993 * 2 1 3 24 24 N 1.48021 * 119.99546 * 359.97384 * 23 2 1 25 25 O 1.21795 * 120.00497 * 275.98486 * 24 23 2 26 26 O 1.21806 * 119.99708 * 95.99212 * 24 23 2 27 27 H 1.08999 * 109.46842 * 269.91233 * 1 2 3 28 28 H 1.08995 * 109.47303 * 29.91185 * 1 2 3 29 29 H 1.09004 * 109.46832 * 149.91060 * 1 2 3 30 30 H 1.07996 * 120.00098 * 0.05828 * 3 2 1 31 31 H 1.08008 * 119.99535 * 180.37166 * 4 3 2 32 32 H 1.08995 * 109.47403 * 96.85763 * 6 5 4 33 33 H 1.08999 * 109.47290 * 216.86228 * 6 5 4 34 34 H 1.09000 * 109.46893 * 336.85593 * 6 5 4 35 35 H 0.96996 * 119.99893 * 241.26295 * 11 8 7 36 36 H 1.08997 * 109.47406 * 299.99903 * 14 12 11 37 37 H 1.08999 * 109.46882 * 59.99791 * 14 12 11 38 38 H 1.08999 * 109.47259 * 179.97438 * 14 12 11 39 39 H 0.96998 * 119.99701 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2718 0.0002 -0.0006 6 6 5.7787 0.0002 -0.0006 7 6 3.5808 -1.1968 -0.0029 8 16 4.4618 -2.7227 -0.0050 9 8 5.7541 -2.4407 0.5143 10 8 3.5899 -3.6902 0.5634 11 7 4.6790 -3.1611 -1.5871 12 6 5.4438 -2.2959 -2.4886 13 1 5.4215 -1.2721 -2.1153 14 6 6.8927 -2.7828 -2.5556 15 6 4.8343 -2.3417 -3.8660 16 1 3.9639 -2.9538 -4.0513 17 6 5.3870 -1.6014 -4.8895 18 7 4.8553 -1.6418 -6.0917 19 14 6.8919 -0.5422 -4.5688 20 1 8.1201 -1.3395 -4.8156 21 1 6.8733 0.6323 -5.4774 22 1 6.8785 -0.0772 -3.1585 23 6 2.1982 -1.1969 -0.0019 24 7 1.4581 -2.4788 -0.0033 25 8 1.0587 -2.9527 1.0452 26 8 1.2485 -3.0599 -1.0531 27 1 -0.3633 -0.0016 1.0277 28 1 -0.3633 0.8907 -0.5124 29 1 -0.3633 -0.8892 -0.5152 30 1 1.6583 2.1327 0.0010 31 1 4.1204 2.1328 0.0066 32 1 6.1421 -0.1235 1.0195 33 1 6.1421 -0.8214 -0.6179 34 1 6.1420 0.9455 -0.4036 35 1 4.2999 -3.9908 -1.9169 36 1 7.3336 -2.7497 -1.5593 37 1 6.9150 -3.8067 -2.9289 38 1 7.4616 -2.1393 -3.2266 39 1 5.2444 -1.1213 -6.8118 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189920401.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:55 Heat of formation + Delta-G solvation = -32.523235 kcal Electronic energy + Delta-G solvation = -27966.546306 eV Core-core repulsion = 24005.653462 eV Total energy + Delta-G solvation = -3960.892844 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.06703 -39.83326 -37.33455 -36.21539 -35.93525 -35.77105 -34.40863 -32.35450 -32.25089 -29.80230 -29.33403 -26.87357 -25.25719 -25.13054 -23.47798 -21.66656 -21.24530 -19.40424 -18.67948 -18.53511 -17.97998 -17.61650 -17.07698 -16.35408 -15.92354 -15.63489 -15.32550 -14.77363 -14.51168 -14.04362 -13.74532 -13.56998 -13.25816 -13.12839 -12.80719 -12.63720 -12.49732 -12.36111 -12.17994 -12.07360 -12.02384 -11.85284 -11.57645 -11.38610 -11.34142 -10.96597 -10.82401 -10.77956 -10.64629 -10.29676 -9.90890 -9.69355 -9.50283 -9.13980 -8.97890 -8.64101 -6.27383 -4.30063 0.12289 0.50211 0.59491 0.78941 1.41488 2.80988 3.10332 3.15667 3.21469 3.22764 3.79924 3.93558 4.18710 4.23384 4.45523 4.53121 4.65266 4.80832 5.00061 5.01999 5.15267 5.17670 5.26637 5.48396 5.58809 5.62767 5.71194 5.75569 5.91168 5.99252 6.07190 6.27803 6.34363 6.42023 6.53092 6.79713 7.09660 7.27814 7.67608 7.79995 8.29762 8.78150 9.30206 10.84959 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.013244 B = 0.006138 C = 0.005864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.661394 B = 4560.857906 C = 4774.086123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.067 4.067 3 C -0.055 4.055 4 C -0.107 4.107 5 C 0.033 3.967 6 C -0.150 4.150 7 C -0.638 4.638 8 S 2.673 3.327 9 O -0.945 6.945 10 O -0.960 6.960 11 N -1.080 6.080 12 C 0.241 3.759 13 H 0.040 0.960 14 C -0.174 4.174 15 C -0.529 4.529 16 H 0.088 0.912 17 C 0.077 3.923 18 N -0.887 5.887 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.293 1.293 22 H -0.265 1.265 23 C 0.074 3.926 24 N 0.012 4.988 25 O -0.108 6.108 26 O -0.134 6.134 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.151 0.849 31 H 0.149 0.851 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.421 0.579 36 H 0.046 0.954 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.993 8.041 12.513 15.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.068 4.068 3 C -0.074 4.074 4 C -0.125 4.125 5 C 0.031 3.969 6 C -0.206 4.206 7 C -0.721 4.721 8 S 2.757 3.243 9 O -0.934 6.934 10 O -0.950 6.950 11 N -0.844 5.844 12 C 0.136 3.864 13 H 0.057 0.943 14 C -0.233 4.233 15 C -0.568 4.568 16 H 0.106 0.894 17 C -0.127 4.127 18 N -0.524 5.524 19 Si 0.707 3.293 20 H -0.199 1.199 21 H -0.220 1.220 22 H -0.190 1.190 23 C -0.007 4.007 24 N 0.543 4.457 25 O -0.337 6.337 26 O -0.353 6.353 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.169 0.831 31 H 0.167 0.833 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.099 0.901 35 H 0.258 0.742 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.260 8.530 13.073 15.773 hybrid contribution 0.071 0.634 -0.620 0.889 sum -2.189 9.163 12.453 15.615 Atomic orbital electron populations 1.20999 0.88968 1.04628 1.03908 1.19657 0.97415 0.90514 0.99252 1.21287 0.94293 0.96983 0.94832 1.21515 0.94245 0.98438 0.98311 1.19716 0.97207 0.90498 0.89483 1.21619 0.88095 1.05316 1.05617 1.30836 1.02273 1.23465 1.15567 1.02708 0.74622 0.72900 0.74024 1.93617 1.37023 1.84694 1.78079 1.93658 1.67056 1.57453 1.76854 1.55287 1.67482 1.33235 1.28348 1.19079 0.87982 0.88121 0.91264 0.94259 1.22644 0.98138 1.02467 1.00050 1.21111 1.15195 1.29636 0.90817 0.89396 1.24895 0.96837 0.96086 0.94870 1.69869 1.40588 1.40816 1.01082 0.87029 0.83820 0.80116 0.78362 1.19909 1.21998 1.18965 1.20185 0.90674 0.84521 1.05329 1.43452 0.99893 1.01435 1.00935 1.94521 1.50950 1.67263 1.20951 1.94635 1.60093 1.60116 1.20473 0.89380 0.89344 0.91063 0.83122 0.83310 0.88055 0.88089 0.90066 0.74210 0.93451 0.91753 0.93109 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 9.77 36.01 0.35 -1.02 16 2 C -0.07 -0.90 5.88 -104.62 -0.62 -1.52 16 3 C -0.06 -0.59 9.70 -39.58 -0.38 -0.98 16 4 C -0.11 -1.23 9.67 -39.58 -0.38 -1.61 16 5 C 0.03 0.49 5.49 -104.63 -0.57 -0.08 16 6 C -0.15 -2.14 7.92 36.00 0.28 -1.85 16 7 C -0.64 -11.18 5.65 -39.58 -0.22 -11.40 16 8 S 2.67 50.69 5.28 -107.50 -0.57 50.13 16 9 O -0.94 -17.81 13.64 -57.17 -0.78 -18.59 16 10 O -0.96 -19.99 15.06 -65.97 -0.99 -20.98 16 11 N -1.08 -21.54 5.46 -5.88 -0.03 -21.57 16 12 C 0.24 5.28 1.89 -69.08 -0.13 5.15 16 13 H 0.04 0.85 3.97 -51.93 -0.21 0.64 16 14 C -0.17 -3.58 8.95 37.16 0.33 -3.25 16 15 C -0.53 -13.78 9.34 -34.44 -0.32 -14.10 16 16 H 0.09 2.50 8.06 -52.48 -0.42 2.08 16 17 C 0.08 2.07 5.45 -17.82 -0.10 1.97 16 18 N -0.89 -25.50 13.96 55.43 0.77 -24.73 16 19 Si 0.88 19.96 24.37 -169.99 -4.14 15.81 16 20 H -0.27 -6.06 6.87 56.52 0.39 -5.67 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.26 -5.49 6.53 56.52 0.37 -5.12 16 23 C 0.07 1.28 6.06 -79.95 -0.48 0.80 16 24 N 0.01 0.22 1.39 33.96 0.05 0.27 16 25 O -0.11 -2.08 18.32 -35.32 -0.65 -2.72 16 26 O -0.13 -2.73 19.14 -31.35 -0.60 -3.33 16 27 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.09 0.70 8.08 -51.93 -0.42 0.28 16 29 H 0.07 0.88 7.43 -51.93 -0.39 0.50 16 30 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.15 1.16 8.06 -52.48 -0.42 0.73 16 32 H 0.10 1.28 7.83 -51.93 -0.41 0.88 16 33 H 0.10 1.70 3.57 -51.93 -0.19 1.51 16 34 H 0.08 0.93 8.04 -51.93 -0.42 0.51 16 35 H 0.42 8.02 8.84 -34.47 -0.30 7.71 16 36 H 0.05 0.88 7.74 -51.93 -0.40 0.48 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.05 1.06 3.27 -51.93 -0.17 0.89 16 39 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 330.43 15.07 4.98 4.98 Total: -1.00 -32.46 330.43 -8.40 -40.86 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -4.19 Total: 7.78 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: -2.25 Total: -27.89 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: 0.79 Total: -46.04 kcal Atomic # 8 Polarization: -42.61 SS G_CDS: -3.02 Total: -45.63 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.14 Total: 15.81 kcal Atomic # 16 Polarization: 50.69 SS G_CDS: -0.57 Total: 50.13 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.46 -8.40 -40.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189920401.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.334 kcal (2) G-P(sol) polarization free energy of solvation -32.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds