Wall clock time and date at job start Tue Mar 31 2020 15:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38263 * 119.99758 * 2 1 4 4 C 1.38215 * 119.99775 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.00401 * 0.08145 * 4 3 2 6 6 C 1.50697 * 120.00398 * 179.97438 * 5 4 3 7 7 C 1.38212 * 119.99830 * 0.02562 * 5 4 3 8 8 S 1.76200 * 120.00137 * 179.97438 * 7 5 4 9 9 O 1.42100 * 106.40149 * 22.35041 * 8 7 5 10 10 O 1.42100 * 106.40193 * 155.26803 * 8 7 5 11 11 N 1.65599 * 107.22060 * 268.80809 * 8 7 5 12 12 C 1.46501 * 119.99860 * 61.26225 * 11 8 7 13 13 H 1.08996 * 109.47090 * 335.87999 * 12 11 8 14 14 C 1.52999 * 109.47148 * 95.88296 * 12 11 8 15 15 C 1.50700 * 109.47084 * 215.88140 * 12 11 8 16 16 H 1.08009 * 119.99862 * 0.02562 * 15 12 11 17 17 C 1.37877 * 120.00071 * 179.97438 * 15 12 11 18 18 N 1.31517 * 119.99746 * 179.97438 * 17 15 12 19 19 Si 1.86796 * 120.00016 * 0.02562 * 17 15 12 20 20 H 1.48495 * 109.47149 * 89.99686 * 19 17 15 21 21 H 1.48501 * 109.47186 * 209.99782 * 19 17 15 22 22 H 1.48502 * 109.47033 * 329.99732 * 19 17 15 23 23 C 1.38214 * 120.00454 * 180.08993 * 2 1 3 24 24 N 1.48021 * 119.99546 * 359.97384 * 23 2 1 25 25 O 1.21795 * 120.00497 * 275.98486 * 24 23 2 26 26 O 1.21806 * 119.99708 * 95.99212 * 24 23 2 27 27 H 1.08999 * 109.46842 * 269.91233 * 1 2 3 28 28 H 1.08995 * 109.47303 * 29.91185 * 1 2 3 29 29 H 1.09004 * 109.46832 * 149.91060 * 1 2 3 30 30 H 1.07996 * 120.00098 * 0.05828 * 3 2 1 31 31 H 1.08008 * 119.99535 * 180.37166 * 4 3 2 32 32 H 1.08995 * 109.47403 * 96.85763 * 6 5 4 33 33 H 1.08999 * 109.47290 * 216.86228 * 6 5 4 34 34 H 1.09000 * 109.46893 * 336.85593 * 6 5 4 35 35 H 0.96996 * 119.99893 * 241.26295 * 11 8 7 36 36 H 1.08997 * 109.47406 * 299.99903 * 14 12 11 37 37 H 1.08999 * 109.46882 * 59.99791 * 14 12 11 38 38 H 1.08999 * 109.47259 * 179.97438 * 14 12 11 39 39 H 0.96998 * 119.99701 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2718 0.0002 -0.0006 6 6 5.7787 0.0002 -0.0006 7 6 3.5808 -1.1968 -0.0029 8 16 4.4618 -2.7227 -0.0050 9 8 5.7541 -2.4407 0.5143 10 8 3.5899 -3.6902 0.5634 11 7 4.6790 -3.1611 -1.5871 12 6 5.4438 -2.2959 -2.4886 13 1 5.4215 -1.2721 -2.1153 14 6 6.8927 -2.7828 -2.5556 15 6 4.8343 -2.3417 -3.8660 16 1 3.9639 -2.9538 -4.0513 17 6 5.3870 -1.6014 -4.8895 18 7 4.8553 -1.6418 -6.0917 19 14 6.8919 -0.5422 -4.5688 20 1 8.1201 -1.3395 -4.8156 21 1 6.8733 0.6323 -5.4774 22 1 6.8785 -0.0772 -3.1585 23 6 2.1982 -1.1969 -0.0019 24 7 1.4581 -2.4788 -0.0033 25 8 1.0587 -2.9527 1.0452 26 8 1.2485 -3.0599 -1.0531 27 1 -0.3633 -0.0016 1.0277 28 1 -0.3633 0.8907 -0.5124 29 1 -0.3633 -0.8892 -0.5152 30 1 1.6583 2.1327 0.0010 31 1 4.1204 2.1328 0.0066 32 1 6.1421 -0.1235 1.0195 33 1 6.1421 -0.8214 -0.6179 34 1 6.1420 0.9455 -0.4036 35 1 4.2999 -3.9908 -1.9169 36 1 7.3336 -2.7497 -1.5593 37 1 6.9150 -3.8067 -2.9289 38 1 7.4616 -2.1393 -3.2266 39 1 5.2444 -1.1213 -6.8118 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189920401.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:54 Heat of formation + Delta-G solvation = -55.454062 kcal Electronic energy + Delta-G solvation = -27967.540662 eV Core-core repulsion = 24005.653462 eV Total energy + Delta-G solvation = -3961.887199 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.44396 -40.91037 -38.83799 -37.70381 -37.61030 -37.29535 -35.44251 -34.32840 -33.34686 -31.14980 -30.63073 -28.17415 -27.17766 -26.11593 -24.61630 -23.01464 -22.84784 -20.86628 -19.99152 -19.94653 -19.58419 -18.90915 -18.39978 -18.13615 -17.58436 -16.94610 -16.39141 -16.16963 -15.62560 -15.46076 -15.10900 -14.91769 -14.47341 -14.36577 -14.20355 -13.99753 -13.85612 -13.73056 -13.55333 -13.48707 -13.20490 -13.14640 -13.04558 -12.85451 -12.82193 -12.53303 -12.32557 -12.31200 -12.13303 -11.86206 -11.47649 -11.31250 -10.92861 -10.86451 -10.43013 -10.18051 -8.32750 -6.41200 -1.08301 -0.85782 -0.70137 -0.41647 0.13842 1.33312 1.34331 1.46615 1.65094 1.91538 2.28893 2.35746 2.76738 3.00158 3.24454 3.40123 3.53754 3.67893 3.76513 3.97877 4.06889 4.19472 4.36628 4.39076 4.46073 4.58543 4.62414 4.63328 4.76333 4.79405 4.85504 4.91419 4.98817 5.06881 5.15246 5.37744 5.39469 5.47914 5.98934 6.26361 6.27202 6.65368 7.23290 8.83398 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.013244 B = 0.006138 C = 0.005864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.661394 B = 4560.857906 C = 4774.086123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.069 4.069 3 C -0.037 4.037 4 C -0.094 4.094 5 C 0.021 3.979 6 C -0.158 4.158 7 C -0.666 4.666 8 S 2.681 3.319 9 O -0.947 6.947 10 O -0.989 6.989 11 N -1.090 6.090 12 C 0.245 3.755 13 H 0.055 0.945 14 C -0.175 4.175 15 C -0.534 4.534 16 H 0.042 0.958 17 C 0.021 3.979 18 N -0.939 5.939 19 Si 0.932 3.068 20 H -0.263 1.263 21 H -0.292 1.292 22 H -0.227 1.227 23 C 0.036 3.964 24 N 0.016 4.984 25 O -0.104 6.104 26 O -0.187 6.187 27 H 0.106 0.894 28 H 0.124 0.876 29 H 0.043 0.957 30 H 0.207 0.793 31 H 0.199 0.801 32 H 0.112 0.888 33 H 0.072 0.928 34 H 0.116 0.884 35 H 0.419 0.581 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.837 12.430 14.359 19.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.071 4.071 3 C -0.055 4.055 4 C -0.112 4.112 5 C 0.018 3.982 6 C -0.214 4.214 7 C -0.753 4.753 8 S 2.770 3.230 9 O -0.936 6.936 10 O -0.979 6.979 11 N -0.851 5.851 12 C 0.139 3.861 13 H 0.073 0.927 14 C -0.234 4.234 15 C -0.573 4.573 16 H 0.061 0.939 17 C -0.178 4.178 18 N -0.578 5.578 19 Si 0.757 3.243 20 H -0.189 1.189 21 H -0.219 1.219 22 H -0.149 1.149 23 C -0.045 4.045 24 N 0.544 4.456 25 O -0.339 6.339 26 O -0.396 6.396 27 H 0.125 0.875 28 H 0.142 0.858 29 H 0.062 0.938 30 H 0.224 0.776 31 H 0.217 0.783 32 H 0.131 0.869 33 H 0.091 0.909 34 H 0.134 0.866 35 H 0.254 0.746 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.082 12.850 14.863 19.678 hybrid contribution -0.415 -0.658 -1.095 1.343 sum -1.497 12.192 13.769 18.452 Atomic orbital electron populations 1.21146 0.87266 1.05064 1.05220 1.20262 0.98934 0.90088 0.97789 1.22004 0.94376 0.97608 0.91507 1.22149 0.94782 0.98828 0.95396 1.20097 0.97826 0.90765 0.89468 1.21726 0.87617 1.06016 1.06075 1.30455 1.02326 1.23291 1.19257 1.02159 0.74387 0.73250 0.73195 1.93601 1.37248 1.84940 1.77861 1.93617 1.67729 1.59478 1.77115 1.55286 1.67839 1.33268 1.28676 1.18955 0.88628 0.89364 0.89119 0.92715 1.22622 0.97022 1.02360 1.01393 1.21298 1.13977 1.28631 0.93361 0.93941 1.25779 1.00215 0.97550 0.94269 1.70033 1.42819 1.42504 1.02419 0.86119 0.79614 0.78257 0.80349 1.18910 1.21940 1.14937 1.20467 0.90879 0.83979 1.09217 1.43829 0.99383 1.02149 1.00236 1.94462 1.50650 1.67856 1.20950 1.94625 1.62222 1.61827 1.20922 0.87525 0.85755 0.93766 0.77590 0.78349 0.86943 0.90911 0.86551 0.74551 0.91233 0.91974 0.92942 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 9.77 71.24 0.70 -1.76 16 2 C -0.07 -1.67 5.88 -19.86 -0.12 -1.79 16 3 C -0.04 -0.58 9.70 22.27 0.22 -0.36 16 4 C -0.09 -1.60 9.67 22.27 0.22 -1.38 16 5 C 0.02 0.54 5.49 -19.87 -0.11 0.43 16 6 C -0.16 -3.86 7.92 71.23 0.56 -3.30 16 7 C -0.67 -22.76 5.65 22.27 0.13 -22.63 16 8 S 2.68 103.37 5.28 -56.49 -0.30 103.07 16 9 O -0.95 -35.12 13.64 -128.00 -1.75 -36.86 16 10 O -0.99 -43.12 15.06 -119.59 -1.80 -44.92 16 11 N -1.09 -45.08 5.46 -172.53 -0.94 -46.02 16 12 C 0.25 10.74 1.89 44.24 0.08 10.83 16 13 H 0.06 2.25 3.97 -2.39 -0.01 2.24 16 14 C -0.18 -6.99 8.95 71.98 0.64 -6.34 16 15 C -0.53 -28.77 9.34 25.60 0.24 -28.53 16 16 H 0.04 2.60 8.06 -2.91 -0.02 2.58 16 17 C 0.02 1.15 5.45 84.65 0.46 1.61 16 18 N -0.94 -55.73 13.96 21.45 0.30 -55.43 16 19 Si 0.93 39.61 24.37 68.60 1.67 41.28 16 20 H -0.26 -10.78 6.87 99.48 0.68 -10.10 16 21 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.23 -8.17 6.53 99.48 0.65 -7.52 16 23 C 0.04 1.22 6.06 36.37 0.22 1.44 16 24 N 0.02 0.64 1.39 -46.46 -0.06 0.57 16 25 O -0.10 -4.15 18.32 24.49 0.45 -3.70 16 26 O -0.19 -8.24 19.14 20.68 0.40 -7.85 16 27 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.12 1.41 8.08 -2.39 -0.02 1.39 16 29 H 0.04 1.08 7.43 -2.38 -0.02 1.06 16 30 H 0.21 0.97 8.06 -2.91 -0.02 0.94 16 31 H 0.20 1.42 8.06 -2.91 -0.02 1.39 16 32 H 0.11 2.44 7.83 -2.39 -0.02 2.43 16 33 H 0.07 2.22 3.57 -2.39 -0.01 2.21 16 34 H 0.12 1.96 8.04 -2.39 -0.02 1.94 16 35 H 0.42 17.28 8.84 -96.75 -0.86 16.42 16 36 H 0.07 2.45 7.74 -2.39 -0.02 2.43 16 37 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.05 2.06 3.27 -2.39 -0.01 2.05 16 39 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -77.06 330.43 1.39 -75.67 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 0.19 Total: 25.98 kcal Atomic # 6 Polarization: -55.03 SS G_CDS: 3.24 Total: -51.79 kcal Atomic # 7 Polarization: -100.17 SS G_CDS: -0.71 Total: -100.87 kcal Atomic # 8 Polarization: -90.63 SS G_CDS: -2.70 Total: -93.33 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 1.67 Total: 41.28 kcal Atomic # 16 Polarization: 103.37 SS G_CDS: -0.30 Total: 103.07 kcal Total: -77.06 1.39 -75.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189920401.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.212 kcal (2) G-P(sol) polarization free energy of solvation -77.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds