Wall clock time and date at job start Tue Mar 31 2020 15:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38252 * 120.00564 * 2 1 4 4 C 1.38209 * 120.00485 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99904 * 0.09013 * 4 3 2 6 6 C 1.50698 * 120.00286 * 179.97438 * 5 4 3 7 7 C 1.38211 * 119.99867 * 0.02562 * 5 4 3 8 8 S 1.76204 * 120.00167 * 179.97438 * 7 5 4 9 9 O 1.42103 * 106.40010 * 18.48188 * 8 7 5 10 10 O 1.42097 * 106.40311 * 151.40461 * 8 7 5 11 11 N 1.65596 * 107.21721 * 264.94578 * 8 7 5 12 12 C 1.46500 * 120.00227 * 62.11401 * 11 8 7 13 13 H 1.08999 * 109.47316 * 25.71523 * 12 11 8 14 14 C 1.53001 * 109.46974 * 265.71579 * 12 11 8 15 15 C 1.50703 * 109.47438 * 145.71562 * 12 11 8 16 16 H 1.07998 * 119.99977 * 359.97438 * 15 12 11 17 17 C 1.37876 * 120.00004 * 180.02562 * 15 12 11 18 18 N 1.31507 * 120.00128 * 359.97438 * 17 15 12 19 19 Si 1.86802 * 119.99878 * 180.02562 * 17 15 12 20 20 H 1.48495 * 109.47420 * 59.99389 * 19 17 15 21 21 H 1.48496 * 109.47125 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46984 * 299.99750 * 19 17 15 23 23 C 1.38220 * 120.00003 * 180.08919 * 2 1 3 24 24 N 1.48020 * 119.99520 * 359.97438 * 23 2 1 25 25 O 1.21804 * 120.00130 * 270.01956 * 24 23 2 26 26 O 1.21803 * 119.99790 * 90.02301 * 24 23 2 27 27 H 1.09005 * 109.47022 * 269.91168 * 1 2 3 28 28 H 1.09002 * 109.46696 * 29.90253 * 1 2 3 29 29 H 1.08993 * 109.47756 * 149.91187 * 1 2 3 30 30 H 1.08007 * 119.99819 * 0.06950 * 3 2 1 31 31 H 1.08001 * 120.00637 * 180.36800 * 4 3 2 32 32 H 1.09001 * 109.46840 * 96.76282 * 6 5 4 33 33 H 1.08994 * 109.47909 * 216.76505 * 6 5 4 34 34 H 1.09002 * 109.47202 * 336.76875 * 6 5 4 35 35 H 0.96999 * 120.00061 * 242.11242 * 11 8 7 36 36 H 1.08996 * 109.47416 * 299.99429 * 14 12 11 37 37 H 1.08996 * 109.47205 * 60.00171 * 14 12 11 38 38 H 1.09001 * 109.46961 * 180.02562 * 14 12 11 39 39 H 0.97006 * 120.00055 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 -0.0002 -0.0008 6 6 5.7787 -0.0003 -0.0008 7 6 3.5806 -1.1971 -0.0032 8 16 4.4615 -2.7231 -0.0056 9 8 5.7816 -2.4250 0.4276 10 8 3.6253 -3.6701 0.6448 11 7 4.5864 -3.2144 -1.5821 12 6 5.3125 -2.3897 -2.5511 13 1 6.0538 -1.7842 -2.0296 14 6 4.3276 -1.4738 -3.2805 15 6 6.0045 -3.2806 -3.5504 16 1 5.9130 -4.3538 -3.4713 17 6 6.7552 -2.7256 -4.5649 18 7 6.8671 -1.4188 -4.6609 19 14 7.6124 -3.8298 -5.8040 20 1 6.6021 -4.6539 -6.5148 21 1 8.3484 -2.9939 -6.7861 22 1 8.5678 -4.7197 -5.0963 23 6 2.1981 -1.1970 -0.0019 24 7 1.4578 -2.4788 -0.0033 25 8 1.1534 -3.0075 1.0510 26 8 1.1533 -3.0050 -1.0587 27 1 -0.3633 -0.0016 1.0277 28 1 -0.3633 0.8909 -0.5123 29 1 -0.3634 -0.8891 -0.5151 30 1 1.6584 2.1326 0.0011 31 1 4.1205 2.1324 0.0065 32 1 6.1419 -0.1225 1.0196 33 1 6.1421 -0.8228 -0.6168 34 1 6.1421 0.9445 -0.4051 35 1 4.1789 -4.0483 -1.8639 36 1 3.5863 -2.0793 -3.8020 37 1 3.8271 -0.8295 -2.5578 38 1 4.8677 -0.8605 -4.0018 39 1 7.3950 -1.0283 -5.3749 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189920414.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:59 Heat of formation + Delta-G solvation = -40.784072 kcal Electronic energy + Delta-G solvation = -27852.840625 eV Core-core repulsion = 23891.589565 eV Total energy + Delta-G solvation = -3961.251061 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.09208 -39.80871 -37.16061 -36.24302 -35.68374 -35.61133 -34.34058 -32.33329 -32.20225 -29.68293 -28.44556 -26.85615 -25.34105 -25.09629 -23.41002 -21.64147 -21.11728 -19.22352 -18.65721 -18.56230 -17.77593 -17.62455 -17.11640 -16.13696 -15.73402 -15.34721 -15.23679 -14.67125 -14.50165 -13.98303 -13.65576 -13.47469 -13.11884 -12.94644 -12.65324 -12.46896 -12.32595 -12.18220 -12.12485 -11.87960 -11.71877 -11.39663 -11.37273 -11.23005 -11.02327 -10.93126 -10.80050 -10.73613 -10.53371 -10.40502 -10.18851 -9.85134 -9.36326 -9.04469 -8.74837 -8.43237 -6.21823 -4.28704 0.17985 0.59956 0.66126 0.73775 1.40924 2.85962 3.24736 3.28688 3.30935 3.40234 3.93535 3.98537 4.25453 4.30147 4.53738 4.57523 4.69354 4.87934 5.06125 5.11876 5.12787 5.19439 5.36465 5.52936 5.58251 5.74006 5.81249 6.01716 6.05882 6.15097 6.41746 6.52259 6.64253 6.74677 6.86769 7.45821 7.55078 7.70352 7.76901 7.88184 8.13943 8.73242 9.37421 10.84434 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.015670 B = 0.005126 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.425316 B = 5461.475061 C = 5765.477794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.070 4.070 3 C -0.058 4.058 4 C -0.107 4.107 5 C 0.039 3.961 6 C -0.150 4.150 7 C -0.637 4.637 8 S 2.667 3.333 9 O -0.941 6.941 10 O -0.964 6.964 11 N -1.088 6.088 12 C 0.266 3.734 13 H 0.053 0.947 14 C -0.159 4.159 15 C -0.521 4.521 16 H 0.067 0.933 17 C 0.066 3.934 18 N -0.890 5.890 19 Si 0.904 3.096 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.072 3.928 24 N 0.008 4.992 25 O -0.095 6.095 26 O -0.148 6.148 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.080 0.920 35 H 0.415 0.585 36 H 0.039 0.961 37 H 0.007 0.993 38 H 0.096 0.904 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.496 8.640 8.324 14.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.072 4.072 3 C -0.077 4.077 4 C -0.125 4.125 5 C 0.038 3.962 6 C -0.206 4.206 7 C -0.720 4.720 8 S 2.751 3.249 9 O -0.930 6.930 10 O -0.953 6.953 11 N -0.852 5.852 12 C 0.162 3.838 13 H 0.070 0.930 14 C -0.219 4.219 15 C -0.561 4.561 16 H 0.085 0.915 17 C -0.137 4.137 18 N -0.528 5.528 19 Si 0.731 3.269 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.009 4.009 24 N 0.539 4.461 25 O -0.327 6.327 26 O -0.363 6.363 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.089 0.911 30 H 0.167 0.833 31 H 0.166 0.834 32 H 0.115 0.885 33 H 0.129 0.871 34 H 0.098 0.902 35 H 0.251 0.749 36 H 0.059 0.941 37 H 0.026 0.974 38 H 0.115 0.885 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.632 9.252 8.924 14.949 hybrid contribution -0.377 -0.452 -1.214 1.349 sum -8.009 8.800 7.710 14.178 Atomic orbital electron populations 1.20990 0.89170 1.04530 1.03820 1.19614 0.97243 0.90546 0.99814 1.21258 0.94345 0.96858 0.95235 1.21537 0.94140 0.98558 0.98310 1.19782 0.97494 0.90245 0.88727 1.21634 0.87639 1.05822 1.05532 1.30951 1.02117 1.23833 1.15054 1.02871 0.74755 0.72969 0.74266 1.93629 1.34620 1.84261 1.80505 1.93655 1.68950 1.58598 1.74144 1.55557 1.68693 1.33390 1.27524 1.18784 0.88913 0.89242 0.86811 0.93004 1.22310 0.99124 0.99594 1.00846 1.21145 1.30479 0.93318 1.11128 0.91532 1.24895 0.96026 0.95301 0.97504 1.69831 1.40164 1.09656 1.33110 0.86459 0.79626 0.80257 0.80541 1.20050 1.21139 1.20013 1.20166 0.90712 0.84253 1.05815 1.43519 1.00019 1.01593 1.00947 1.94552 1.54293 1.63263 1.20589 1.94597 1.56984 1.64449 1.20287 0.89562 0.89453 0.91073 0.83316 0.83355 0.88514 0.87094 0.90153 0.74904 0.94147 0.97441 0.88518 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 9.77 36.00 0.35 -0.96 16 2 C -0.07 -0.91 5.88 -104.63 -0.62 -1.53 16 3 C -0.06 -0.60 9.70 -39.59 -0.38 -0.99 16 4 C -0.11 -1.21 9.68 -39.58 -0.38 -1.60 16 5 C 0.04 0.59 5.38 -104.63 -0.56 0.03 16 6 C -0.15 -2.26 8.33 36.00 0.30 -1.96 16 7 C -0.64 -11.10 4.71 -39.59 -0.19 -11.29 16 8 S 2.67 52.96 5.31 -107.50 -0.57 52.39 16 9 O -0.94 -19.54 13.62 -57.17 -0.78 -20.32 16 10 O -0.96 -20.67 15.00 -65.63 -0.98 -21.66 16 11 N -1.09 -22.74 5.47 -5.88 -0.03 -22.77 16 12 C 0.27 6.20 2.82 -69.08 -0.19 6.01 16 13 H 0.05 1.26 5.28 -51.93 -0.27 0.99 16 14 C -0.16 -3.56 9.29 37.16 0.35 -3.22 16 15 C -0.52 -13.41 8.75 -34.44 -0.30 -13.71 16 16 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 17 C 0.07 1.70 5.30 -17.82 -0.09 1.60 16 18 N -0.89 -23.33 11.32 55.43 0.63 -22.70 16 19 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 C 0.07 1.20 6.05 -79.95 -0.48 0.72 16 24 N 0.01 0.15 1.69 33.96 0.06 0.20 16 25 O -0.10 -1.82 17.85 -35.97 -0.64 -2.46 16 26 O -0.15 -2.85 19.13 -29.46 -0.56 -3.41 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.09 0.64 8.08 -51.93 -0.42 0.22 16 29 H 0.07 0.83 7.32 -51.93 -0.38 0.45 16 30 H 0.15 0.93 8.06 -52.48 -0.42 0.51 16 31 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.10 1.33 7.87 -51.93 -0.41 0.93 16 33 H 0.11 2.04 3.42 -51.93 -0.18 1.87 16 34 H 0.08 0.98 8.04 -51.93 -0.42 0.56 16 35 H 0.42 8.23 8.82 -34.47 -0.30 7.92 16 36 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.01 0.13 6.35 -51.93 -0.33 -0.20 16 38 H 0.10 2.34 6.07 -51.93 -0.32 2.02 16 39 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 LS Contribution 335.69 15.07 5.06 5.06 Total: -1.00 -30.99 335.69 -9.32 -40.31 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -4.26 Total: 7.00 kcal Atomic # 6 Polarization: -24.68 SS G_CDS: -2.21 Total: -26.89 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 0.65 Total: -45.26 kcal Atomic # 8 Polarization: -44.88 SS G_CDS: -2.97 Total: -47.85 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 52.96 SS G_CDS: -0.57 Total: 52.39 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.99 -9.32 -40.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189920414.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.473 kcal (2) G-P(sol) polarization free energy of solvation -30.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds