Wall clock time and date at job start Tue Mar 31 2020 15:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38252 * 120.00564 * 2 1 4 4 C 1.38209 * 120.00485 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99904 * 0.09013 * 4 3 2 6 6 C 1.50698 * 120.00286 * 179.97438 * 5 4 3 7 7 C 1.38211 * 119.99867 * 0.02562 * 5 4 3 8 8 S 1.76204 * 120.00167 * 179.97438 * 7 5 4 9 9 O 1.42103 * 106.40010 * 18.48188 * 8 7 5 10 10 O 1.42097 * 106.40311 * 151.40461 * 8 7 5 11 11 N 1.65596 * 107.21721 * 264.94578 * 8 7 5 12 12 C 1.46500 * 120.00227 * 62.11401 * 11 8 7 13 13 H 1.08999 * 109.47316 * 25.71523 * 12 11 8 14 14 C 1.53001 * 109.46974 * 265.71579 * 12 11 8 15 15 C 1.50703 * 109.47438 * 145.71562 * 12 11 8 16 16 H 1.07998 * 119.99977 * 359.97438 * 15 12 11 17 17 C 1.37876 * 120.00004 * 180.02562 * 15 12 11 18 18 N 1.31507 * 120.00128 * 359.97438 * 17 15 12 19 19 Si 1.86802 * 119.99878 * 180.02562 * 17 15 12 20 20 H 1.48495 * 109.47420 * 59.99389 * 19 17 15 21 21 H 1.48496 * 109.47125 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46984 * 299.99750 * 19 17 15 23 23 C 1.38220 * 120.00003 * 180.08919 * 2 1 3 24 24 N 1.48020 * 119.99520 * 359.97438 * 23 2 1 25 25 O 1.21804 * 120.00130 * 270.01956 * 24 23 2 26 26 O 1.21803 * 119.99790 * 90.02301 * 24 23 2 27 27 H 1.09005 * 109.47022 * 269.91168 * 1 2 3 28 28 H 1.09002 * 109.46696 * 29.90253 * 1 2 3 29 29 H 1.08993 * 109.47756 * 149.91187 * 1 2 3 30 30 H 1.08007 * 119.99819 * 0.06950 * 3 2 1 31 31 H 1.08001 * 120.00637 * 180.36800 * 4 3 2 32 32 H 1.09001 * 109.46840 * 96.76282 * 6 5 4 33 33 H 1.08994 * 109.47909 * 216.76505 * 6 5 4 34 34 H 1.09002 * 109.47202 * 336.76875 * 6 5 4 35 35 H 0.96999 * 120.00061 * 242.11242 * 11 8 7 36 36 H 1.08996 * 109.47416 * 299.99429 * 14 12 11 37 37 H 1.08996 * 109.47205 * 60.00171 * 14 12 11 38 38 H 1.09001 * 109.46961 * 180.02562 * 14 12 11 39 39 H 0.97006 * 120.00055 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 -0.0002 -0.0008 6 6 5.7787 -0.0003 -0.0008 7 6 3.5806 -1.1971 -0.0032 8 16 4.4615 -2.7231 -0.0056 9 8 5.7816 -2.4250 0.4276 10 8 3.6253 -3.6701 0.6448 11 7 4.5864 -3.2144 -1.5821 12 6 5.3125 -2.3897 -2.5511 13 1 6.0538 -1.7842 -2.0296 14 6 4.3276 -1.4738 -3.2805 15 6 6.0045 -3.2806 -3.5504 16 1 5.9130 -4.3538 -3.4713 17 6 6.7552 -2.7256 -4.5649 18 7 6.8671 -1.4188 -4.6609 19 14 7.6124 -3.8298 -5.8040 20 1 6.6021 -4.6539 -6.5148 21 1 8.3484 -2.9939 -6.7861 22 1 8.5678 -4.7197 -5.0963 23 6 2.1981 -1.1970 -0.0019 24 7 1.4578 -2.4788 -0.0033 25 8 1.1534 -3.0075 1.0510 26 8 1.1533 -3.0050 -1.0587 27 1 -0.3633 -0.0016 1.0277 28 1 -0.3633 0.8909 -0.5123 29 1 -0.3634 -0.8891 -0.5151 30 1 1.6584 2.1326 0.0011 31 1 4.1205 2.1324 0.0065 32 1 6.1419 -0.1225 1.0196 33 1 6.1421 -0.8228 -0.6168 34 1 6.1421 0.9445 -0.4051 35 1 4.1789 -4.0483 -1.8639 36 1 3.5863 -2.0793 -3.8020 37 1 3.8271 -0.8295 -2.5578 38 1 4.8677 -0.8605 -4.0018 39 1 7.3950 -1.0283 -5.3749 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189920414.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:58 Heat of formation + Delta-G solvation = -60.585903 kcal Electronic energy + Delta-G solvation = -27853.699297 eV Core-core repulsion = 23891.589565 eV Total energy + Delta-G solvation = -3962.109733 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.43168 -40.89595 -38.74925 -37.67077 -37.42373 -37.25713 -35.39539 -34.21116 -33.32195 -30.66200 -30.22247 -28.15663 -27.28453 -26.08181 -24.55002 -22.95652 -22.80853 -20.74864 -19.97608 -19.90867 -19.43978 -18.92215 -18.49110 -17.87184 -17.20678 -16.88588 -16.38444 -16.11277 -15.58818 -15.48621 -14.89613 -14.70830 -14.41175 -14.14407 -14.11247 -13.88525 -13.65796 -13.52155 -13.51283 -13.17256 -13.11518 -13.01517 -12.85357 -12.81109 -12.75278 -12.46914 -12.30390 -12.28534 -12.22917 -12.06316 -11.79837 -11.17688 -10.86873 -10.64248 -10.25322 -10.12601 -8.18092 -6.30878 -1.02918 -0.79177 -0.72066 -0.38906 0.15621 1.45763 1.45879 1.53370 1.74477 1.97775 2.39891 2.43957 2.81596 3.11899 3.29067 3.44381 3.57356 3.71156 3.80559 4.01809 4.23244 4.33529 4.41380 4.49581 4.64006 4.66060 4.78924 4.81750 4.87478 4.88551 4.96225 5.01811 5.03840 5.23502 5.42195 5.55507 5.71551 5.90879 6.00003 6.27001 6.29567 6.75041 7.37527 8.87200 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.015670 B = 0.005126 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.425316 B = 5461.475061 C = 5765.477794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.066 4.066 3 C -0.035 4.035 4 C -0.093 4.093 5 C 0.027 3.973 6 C -0.154 4.154 7 C -0.657 4.657 8 S 2.673 3.327 9 O -0.960 6.960 10 O -0.989 6.989 11 N -1.096 6.096 12 C 0.271 3.729 13 H 0.041 0.959 14 C -0.144 4.144 15 C -0.547 4.547 16 H 0.060 0.940 17 C 0.026 3.974 18 N -0.906 5.906 19 Si 0.959 3.041 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.276 1.276 23 C 0.039 3.961 24 N 0.012 4.988 25 O -0.112 6.112 26 O -0.172 6.172 27 H 0.102 0.898 28 H 0.125 0.875 29 H 0.048 0.952 30 H 0.207 0.793 31 H 0.195 0.805 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.416 0.584 36 H 0.031 0.969 37 H 0.028 0.972 38 H 0.079 0.921 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.417 12.079 8.363 17.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.068 4.068 3 C -0.053 4.053 4 C -0.111 4.111 5 C 0.024 3.976 6 C -0.210 4.210 7 C -0.746 4.746 8 S 2.763 3.237 9 O -0.950 6.950 10 O -0.979 6.979 11 N -0.858 5.858 12 C 0.166 3.834 13 H 0.059 0.941 14 C -0.204 4.204 15 C -0.587 4.587 16 H 0.078 0.922 17 C -0.176 4.176 18 N -0.545 5.545 19 Si 0.785 3.215 20 H -0.198 1.198 21 H -0.203 1.203 22 H -0.201 1.201 23 C -0.042 4.042 24 N 0.540 4.460 25 O -0.344 6.344 26 O -0.385 6.385 27 H 0.120 0.880 28 H 0.144 0.856 29 H 0.067 0.933 30 H 0.224 0.776 31 H 0.212 0.788 32 H 0.120 0.880 33 H 0.091 0.909 34 H 0.129 0.871 35 H 0.251 0.749 36 H 0.050 0.950 37 H 0.047 0.953 38 H 0.098 0.902 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.533 12.624 8.951 17.672 hybrid contribution -0.135 -1.366 -1.142 1.786 sum -8.668 11.258 7.809 16.213 Atomic orbital electron populations 1.21144 0.87152 1.05313 1.05070 1.20222 0.98870 0.89888 0.97864 1.21971 0.94084 0.97697 0.91568 1.22099 0.94872 0.98571 0.95537 1.20006 0.97400 0.90872 0.89274 1.21623 0.88188 1.05866 1.05339 1.30321 1.02305 1.22823 1.19135 1.02232 0.74377 0.73609 0.73442 1.93605 1.35988 1.84795 1.80626 1.93618 1.69354 1.60591 1.74332 1.55457 1.69018 1.33682 1.27622 1.18574 0.89027 0.89121 0.86638 0.94119 1.22104 0.98425 0.99230 1.00621 1.21483 1.31394 0.93542 1.12254 0.92165 1.25563 0.96528 0.96551 0.98925 1.69913 1.40424 1.10574 1.33551 0.85596 0.78610 0.78758 0.78585 1.19779 1.20340 1.20094 1.20401 0.90552 0.83983 1.09295 1.43857 0.99578 1.02226 1.00353 1.94518 1.54947 1.64171 1.20744 1.94571 1.57961 1.65486 1.20511 0.87968 0.85630 0.93332 0.77574 0.78762 0.88012 0.90891 0.87089 0.74931 0.94983 0.95317 0.90210 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 9.77 71.23 0.70 -1.48 16 2 C -0.07 -1.49 5.88 -19.87 -0.12 -1.61 16 3 C -0.04 -0.52 9.70 22.27 0.22 -0.30 16 4 C -0.09 -1.61 9.68 22.27 0.22 -1.39 16 5 C 0.03 0.74 5.38 -19.87 -0.11 0.63 16 6 C -0.15 -4.44 8.33 71.24 0.59 -3.85 16 7 C -0.66 -22.67 4.71 22.27 0.10 -22.57 16 8 S 2.67 110.65 5.31 -56.49 -0.30 110.35 16 9 O -0.96 -41.74 13.62 -128.00 -1.74 -43.48 16 10 O -0.99 -44.66 15.00 -119.91 -1.80 -46.46 16 11 N -1.10 -48.05 5.47 -172.52 -0.94 -48.99 16 12 C 0.27 13.01 2.82 44.25 0.12 13.14 16 13 H 0.04 2.07 5.28 -2.39 -0.01 2.06 16 14 C -0.14 -6.52 9.29 71.98 0.67 -5.86 16 15 C -0.55 -28.94 8.75 25.60 0.22 -28.71 16 16 H 0.06 3.16 7.81 -2.91 -0.02 3.14 16 17 C 0.03 1.33 5.30 84.66 0.45 1.78 16 18 N -0.91 -47.74 11.32 21.45 0.24 -47.50 16 19 Si 0.96 41.74 29.54 68.60 2.03 43.77 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 21 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 23 C 0.04 1.26 6.05 36.37 0.22 1.49 16 24 N 0.01 0.44 1.69 -46.46 -0.08 0.36 16 25 O -0.11 -4.43 17.85 25.10 0.45 -3.99 16 26 O -0.17 -6.91 19.13 18.88 0.36 -6.55 16 27 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 28 H 0.13 1.13 8.08 -2.39 -0.02 1.11 16 29 H 0.05 1.06 7.32 -2.39 -0.02 1.04 16 30 H 0.21 0.74 8.06 -2.91 -0.02 0.71 16 31 H 0.20 1.61 8.06 -2.91 -0.02 1.59 16 32 H 0.10 2.74 7.87 -2.39 -0.02 2.72 16 33 H 0.07 2.74 3.42 -2.39 -0.01 2.73 16 34 H 0.11 2.40 8.04 -2.39 -0.02 2.39 16 35 H 0.42 17.60 8.82 -96.75 -0.85 16.74 16 36 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.03 1.12 6.35 -2.39 -0.02 1.11 16 38 H 0.08 3.88 6.07 -2.39 -0.01 3.87 16 39 H 0.27 13.39 8.31 -92.70 -0.77 12.62 16 Total: -1.00 -71.53 335.69 1.77 -69.77 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.26 Total: 21.46 kcal Atomic # 6 Polarization: -52.03 SS G_CDS: 3.29 Total: -48.74 kcal Atomic # 7 Polarization: -95.35 SS G_CDS: -0.78 Total: -96.13 kcal Atomic # 8 Polarization: -97.75 SS G_CDS: -2.73 Total: -100.48 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Atomic # 16 Polarization: 110.65 SS G_CDS: -0.30 Total: 110.35 kcal Total: -71.53 1.77 -69.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189920414.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.181 kcal (2) G-P(sol) polarization free energy of solvation -71.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds