Wall clock time and date at job start Tue Mar 31 2020 15:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38253 * 120.00258 * 2 1 4 4 C 1.38214 * 120.00044 * 179.79108 * 3 2 1 5 5 C 1.50705 * 119.99740 * 180.27449 * 4 3 2 6 6 C 1.38252 * 119.99936 * 0.43814 * 4 3 2 7 7 S 1.76199 * 119.99869 * 179.83766 * 6 4 3 8 8 O 1.42104 * 106.40369 * 179.09016 * 7 6 4 9 9 O 1.42102 * 106.39977 * 312.01142 * 7 6 4 10 10 N 1.65606 * 107.22021 * 65.55144 * 7 6 4 11 11 C 1.46493 * 120.00047 * 62.73304 * 10 7 6 12 12 H 1.09003 * 109.47527 * 333.74391 * 11 10 7 13 13 C 1.52997 * 109.47228 * 93.74380 * 11 10 7 14 14 C 1.50707 * 109.47288 * 213.74539 * 11 10 7 15 15 H 1.07998 * 119.99577 * 359.97438 * 14 11 10 16 16 C 1.37876 * 119.99800 * 180.02562 * 14 11 10 17 17 N 1.31512 * 120.00401 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 119.99689 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.47137 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47325 * 119.99477 * 18 16 14 21 21 H 1.48498 * 109.46715 * 239.99926 * 18 16 14 22 22 C 1.38206 * 120.00227 * 359.81126 * 6 4 3 23 23 C 1.38215 * 119.99664 * 180.27098 * 2 1 3 24 24 N 1.48014 * 120.00586 * 359.97438 * 23 2 1 25 25 O 1.21799 * 119.99825 * 322.37802 * 24 23 2 26 26 O 1.21803 * 120.00452 * 142.37310 * 24 23 2 27 27 H 1.09000 * 109.46669 * 264.21416 * 1 2 3 28 28 H 1.08996 * 109.47159 * 24.21852 * 1 2 3 29 29 H 1.08999 * 109.46838 * 144.21930 * 1 2 3 30 30 H 1.07999 * 119.99610 * 359.97438 * 3 2 1 31 31 H 1.08990 * 109.46983 * 264.52276 * 5 4 3 32 32 H 1.09005 * 109.46915 * 24.52411 * 5 4 3 33 33 H 1.09000 * 109.46545 * 144.52257 * 5 4 3 34 34 H 0.96998 * 119.99682 * 242.74173 * 10 7 6 35 35 H 1.09003 * 109.47342 * 179.97438 * 13 11 10 36 36 H 1.09007 * 109.47250 * 300.00004 * 13 11 10 37 37 H 1.09000 * 109.47270 * 59.99894 * 13 11 10 38 38 H 0.97002 * 120.00048 * 179.97438 * 17 16 14 39 39 H 1.07999 * 120.00600 * 180.02562 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 0.0044 5 6 4.3340 2.5024 0.0106 6 6 4.2717 -0.0001 -0.0004 7 16 6.0337 -0.0001 0.0008 8 8 6.4350 -1.3632 0.0167 9 8 6.4357 0.9167 -1.0077 10 7 6.5230 0.6482 1.4440 11 6 6.1838 -0.0231 2.7011 12 1 5.2760 -0.6111 2.5656 13 6 7.3325 -0.9461 3.1125 14 6 5.9583 1.0083 3.7765 15 1 6.0581 2.0588 3.5466 16 6 5.6255 0.6107 5.0541 17 7 5.5045 -0.6685 5.3342 18 14 5.3453 1.8892 6.3869 19 1 5.5406 3.2473 5.8190 20 1 3.9607 1.7649 6.9089 21 1 6.3126 1.6718 7.4925 22 6 3.5807 -1.1970 -0.0056 23 6 2.1981 -1.1970 -0.0057 24 7 1.4580 -2.4789 -0.0112 25 8 0.4303 -2.5914 0.6327 26 8 1.8768 -3.4211 -0.6595 27 1 -0.3633 -0.1036 1.0225 28 1 -0.3633 0.9372 -0.4216 29 1 -0.3633 -0.8337 -0.6009 30 1 1.6584 2.1326 -0.0004 31 1 4.6038 2.7710 -1.0106 32 1 3.7046 3.2832 0.4375 33 1 5.2385 2.3967 0.6096 34 1 7.0340 1.4725 1.4569 35 1 7.0803 -1.4453 4.0481 36 1 7.4956 -1.6922 2.3347 37 1 8.2403 -0.3582 3.2480 38 1 5.2707 -0.9482 6.2331 39 1 4.1206 -2.1323 -0.0090 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191902635.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:03 Heat of formation + Delta-G solvation = -58.427735 kcal Electronic energy + Delta-G solvation = -26940.896705 eV Core-core repulsion = 22978.880557 eV Total energy + Delta-G solvation = -3962.016147 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.22827 -39.83833 -37.04178 -36.55168 -35.71497 -35.57827 -34.17282 -32.79154 -32.35191 -28.84618 -28.40993 -27.89355 -25.35191 -25.07693 -23.01830 -21.63851 -21.13480 -19.98777 -18.73453 -18.60690 -17.72415 -17.56806 -16.48994 -16.26251 -15.96646 -15.50584 -15.30689 -14.66570 -14.51626 -14.31066 -13.77366 -13.48960 -13.01626 -12.80923 -12.70347 -12.37342 -12.34859 -12.24178 -12.19582 -11.88090 -11.84803 -11.64835 -11.52726 -11.29114 -11.17057 -11.12049 -11.03108 -10.77800 -10.67885 -10.41043 -10.26669 -9.59556 -9.44683 -9.34717 -8.79460 -8.48716 -6.26592 -4.36474 -0.07535 0.43316 0.72822 1.12289 1.40099 2.82329 3.13721 3.22289 3.23972 3.41041 3.94317 4.09457 4.14288 4.22261 4.36873 4.52050 4.74431 4.94803 5.05408 5.07765 5.16149 5.22559 5.24578 5.39935 5.47098 5.59211 5.73440 5.80142 5.88703 6.11685 6.11957 6.44363 6.67080 6.92049 6.95932 7.42462 7.53271 7.61964 7.66602 7.89295 8.10516 8.66637 9.31044 10.78968 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.010634 B = 0.005371 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.313856 B = 5211.951567 C = 5991.219882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.026 3.974 3 C -0.143 4.143 4 C 0.077 3.923 5 C -0.153 4.153 6 C -0.676 4.676 7 S 2.692 3.308 8 O -0.955 6.955 9 O -0.970 6.970 10 N -1.096 6.096 11 C 0.274 3.726 12 H 0.037 0.963 13 C -0.160 4.160 14 C -0.529 4.529 15 H 0.066 0.934 16 C 0.066 3.934 17 N -0.883 5.883 18 Si 0.899 3.101 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.281 1.281 22 C 0.052 3.948 23 C -0.072 4.072 24 N 0.030 4.970 25 O -0.150 6.150 26 O -0.157 6.157 27 H 0.101 0.899 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.153 0.847 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.412 0.588 35 H 0.093 0.907 36 H 0.027 0.973 37 H 0.035 0.965 38 H 0.266 0.734 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.619 5.514 -9.851 13.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.024 3.976 3 C -0.162 4.162 4 C 0.076 3.924 5 C -0.209 4.209 6 C -0.760 4.760 7 S 2.777 3.223 8 O -0.945 6.945 9 O -0.960 6.960 10 N -0.859 5.859 11 C 0.170 3.830 12 H 0.055 0.945 13 C -0.220 4.220 14 C -0.568 4.568 15 H 0.084 0.916 16 C -0.138 4.138 17 N -0.521 5.521 18 Si 0.727 3.273 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.207 1.207 22 C 0.032 3.968 23 C -0.155 4.155 24 N 0.552 4.448 25 O -0.369 6.369 26 O -0.374 6.374 27 H 0.119 0.881 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.171 0.829 31 H 0.123 0.877 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.247 0.753 35 H 0.111 0.889 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.076 0.924 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -5.917 5.522 -10.372 13.156 hybrid contribution -0.923 0.630 1.256 1.681 sum -6.840 6.151 -9.116 12.951 Atomic orbital electron populations 1.21139 0.88536 1.03939 1.05025 1.19945 0.97716 0.90547 0.89356 1.21068 0.93417 0.97283 1.04460 1.19916 0.94059 0.94354 0.84056 1.21428 1.01372 0.93074 1.05010 1.31263 1.29314 0.97145 1.18247 1.02107 0.72933 0.74094 0.73144 1.93585 1.79383 1.34886 1.86625 1.93561 1.80821 1.64448 1.57135 1.55627 1.68271 1.39479 1.22486 1.18581 0.93722 0.91571 0.79094 0.94489 1.22255 0.98335 0.98765 1.02596 1.21259 1.48821 0.92895 0.93874 0.91574 1.24929 0.94820 0.95526 0.98524 1.69878 1.46911 1.14172 1.21119 0.86422 0.77938 0.81361 0.81585 1.19652 1.20921 1.20738 1.20668 0.90997 0.99411 0.85742 1.20852 0.92464 0.83502 1.18705 1.43459 1.00486 1.02351 0.98467 1.94516 1.12690 1.89172 1.40499 1.94562 1.71352 1.30895 1.40573 0.88055 0.89930 0.90533 0.82928 0.87705 0.89200 0.89366 0.75309 0.88892 0.95408 0.94632 0.92426 0.81676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 8.65 36.01 0.31 -0.98 16 2 C 0.03 0.34 5.87 -104.62 -0.61 -0.28 16 3 C -0.14 -1.69 9.31 -39.58 -0.37 -2.06 16 4 C 0.08 1.07 5.87 -104.62 -0.61 0.45 16 5 C -0.15 -1.77 8.59 36.01 0.31 -1.46 16 6 C -0.68 -10.94 5.58 -39.59 -0.22 -11.16 16 7 S 2.69 46.84 4.87 -107.50 -0.52 46.32 16 8 O -0.95 -19.22 16.15 -57.17 -0.92 -20.14 16 9 O -0.97 -16.82 16.41 -57.17 -0.94 -17.76 16 10 N -1.10 -19.87 4.29 -5.88 -0.03 -19.90 16 11 C 0.27 6.15 2.77 -69.08 -0.19 5.96 16 12 H 0.04 0.90 7.73 -51.93 -0.40 0.50 16 13 C -0.16 -3.68 9.29 37.16 0.35 -3.33 16 14 C -0.53 -12.71 8.75 -34.44 -0.30 -13.02 16 15 H 0.07 1.51 7.81 -52.49 -0.41 1.10 16 16 C 0.07 1.65 5.30 -17.82 -0.09 1.56 16 17 N -0.88 -23.37 11.32 55.43 0.63 -22.74 16 18 Si 0.90 19.51 29.54 -169.99 -5.02 14.49 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 22 C 0.05 0.87 9.17 -39.58 -0.36 0.50 16 23 C -0.07 -1.14 6.48 -79.95 -0.52 -1.66 16 24 N 0.03 0.50 4.13 33.96 0.14 0.64 16 25 O -0.15 -2.45 16.80 -29.46 -0.50 -2.95 16 26 O -0.16 -2.71 18.95 -29.46 -0.56 -3.27 16 27 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.08 0.58 8.05 -51.93 -0.42 0.16 16 29 H 0.08 0.80 6.92 -51.93 -0.36 0.44 16 30 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.10 1.09 8.00 -51.93 -0.42 0.67 16 32 H 0.09 0.80 8.05 -51.93 -0.42 0.38 16 33 H 0.09 1.12 5.53 -51.93 -0.29 0.83 16 34 H 0.41 6.52 8.52 -34.47 -0.29 6.22 16 35 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 36 H 0.03 0.60 7.51 -51.92 -0.39 0.21 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 39 H 0.17 2.74 7.29 -52.49 -0.38 2.36 16 LS Contribution 343.53 15.07 5.18 5.18 Total: -1.00 -30.13 343.53 -9.35 -39.49 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -4.49 Total: 6.12 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: -2.32 Total: -25.47 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: 0.74 Total: -42.00 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: -2.92 Total: -44.12 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Atomic # 16 Polarization: 46.84 SS G_CDS: -0.52 Total: 46.32 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.13 -9.35 -39.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191902635.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.940 kcal (2) G-P(sol) polarization free energy of solvation -30.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds