Wall clock time and date at job start Tue Mar 31 2020 15:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38253 * 120.00258 * 2 1 4 4 C 1.38214 * 120.00044 * 179.79108 * 3 2 1 5 5 C 1.50705 * 119.99740 * 180.27449 * 4 3 2 6 6 C 1.38252 * 119.99936 * 0.43814 * 4 3 2 7 7 S 1.76199 * 119.99869 * 179.83766 * 6 4 3 8 8 O 1.42104 * 106.40369 * 179.09016 * 7 6 4 9 9 O 1.42102 * 106.39977 * 312.01142 * 7 6 4 10 10 N 1.65606 * 107.22021 * 65.55144 * 7 6 4 11 11 C 1.46493 * 120.00047 * 62.73304 * 10 7 6 12 12 H 1.09003 * 109.47527 * 333.74391 * 11 10 7 13 13 C 1.52997 * 109.47228 * 93.74380 * 11 10 7 14 14 C 1.50707 * 109.47288 * 213.74539 * 11 10 7 15 15 H 1.07998 * 119.99577 * 359.97438 * 14 11 10 16 16 C 1.37876 * 119.99800 * 180.02562 * 14 11 10 17 17 N 1.31512 * 120.00401 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 119.99689 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.47137 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47325 * 119.99477 * 18 16 14 21 21 H 1.48498 * 109.46715 * 239.99926 * 18 16 14 22 22 C 1.38206 * 120.00227 * 359.81126 * 6 4 3 23 23 C 1.38215 * 119.99664 * 180.27098 * 2 1 3 24 24 N 1.48014 * 120.00586 * 359.97438 * 23 2 1 25 25 O 1.21799 * 119.99825 * 322.37802 * 24 23 2 26 26 O 1.21803 * 120.00452 * 142.37310 * 24 23 2 27 27 H 1.09000 * 109.46669 * 264.21416 * 1 2 3 28 28 H 1.08996 * 109.47159 * 24.21852 * 1 2 3 29 29 H 1.08999 * 109.46838 * 144.21930 * 1 2 3 30 30 H 1.07999 * 119.99610 * 359.97438 * 3 2 1 31 31 H 1.08990 * 109.46983 * 264.52276 * 5 4 3 32 32 H 1.09005 * 109.46915 * 24.52411 * 5 4 3 33 33 H 1.09000 * 109.46545 * 144.52257 * 5 4 3 34 34 H 0.96998 * 119.99682 * 242.74173 * 10 7 6 35 35 H 1.09003 * 109.47342 * 179.97438 * 13 11 10 36 36 H 1.09007 * 109.47250 * 300.00004 * 13 11 10 37 37 H 1.09000 * 109.47270 * 59.99894 * 13 11 10 38 38 H 0.97002 * 120.00048 * 179.97438 * 17 16 14 39 39 H 1.07999 * 120.00600 * 180.02562 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 0.0044 5 6 4.3340 2.5024 0.0106 6 6 4.2717 -0.0001 -0.0004 7 16 6.0337 -0.0001 0.0008 8 8 6.4350 -1.3632 0.0167 9 8 6.4357 0.9167 -1.0077 10 7 6.5230 0.6482 1.4440 11 6 6.1838 -0.0231 2.7011 12 1 5.2760 -0.6111 2.5656 13 6 7.3325 -0.9461 3.1125 14 6 5.9583 1.0083 3.7765 15 1 6.0581 2.0588 3.5466 16 6 5.6255 0.6107 5.0541 17 7 5.5045 -0.6685 5.3342 18 14 5.3453 1.8892 6.3869 19 1 5.5406 3.2473 5.8190 20 1 3.9607 1.7649 6.9089 21 1 6.3126 1.6718 7.4925 22 6 3.5807 -1.1970 -0.0056 23 6 2.1981 -1.1970 -0.0057 24 7 1.4580 -2.4789 -0.0112 25 8 0.4303 -2.5914 0.6327 26 8 1.8768 -3.4211 -0.6595 27 1 -0.3633 -0.1036 1.0225 28 1 -0.3633 0.9372 -0.4216 29 1 -0.3633 -0.8337 -0.6009 30 1 1.6584 2.1326 -0.0004 31 1 4.6038 2.7710 -1.0106 32 1 3.7046 3.2832 0.4375 33 1 5.2385 2.3967 0.6096 34 1 7.0340 1.4725 1.4569 35 1 7.0803 -1.4453 4.0481 36 1 7.4956 -1.6922 2.3347 37 1 8.2403 -0.3582 3.2480 38 1 5.2707 -0.9482 6.2331 39 1 4.1206 -2.1323 -0.0090 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191902635.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:02 Heat of formation + Delta-G solvation = -77.429563 kcal Electronic energy + Delta-G solvation = -26941.720686 eV Core-core repulsion = 22978.880557 eV Total energy + Delta-G solvation = -3962.840129 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.49566 -40.93834 -38.50612 -37.84976 -37.40429 -37.06103 -35.22756 -34.18750 -33.83919 -30.29611 -29.82153 -28.79011 -27.26330 -26.25869 -24.11653 -22.94505 -22.70451 -21.28623 -20.08076 -19.99263 -19.15233 -18.97574 -18.02787 -17.54576 -17.40193 -16.92719 -16.57646 -16.19942 -15.56617 -15.32737 -15.26257 -14.59732 -14.36678 -14.13918 -13.85776 -13.64950 -13.60027 -13.43103 -13.37801 -13.27217 -13.21907 -13.05381 -12.99477 -12.86756 -12.82007 -12.41177 -12.38438 -12.31030 -12.25818 -12.05798 -11.98075 -11.14310 -10.72292 -10.62476 -10.47860 -10.20159 -8.15780 -6.31017 -1.26292 -0.80661 -0.59436 -0.07310 0.18197 1.44111 1.47773 1.57295 1.70448 2.00444 2.43524 2.57480 3.04871 3.11965 3.15400 3.29108 3.37514 3.64851 3.81250 4.12715 4.13957 4.23468 4.31689 4.41725 4.51223 4.64016 4.77369 4.83504 4.86568 4.92047 4.94129 5.05685 5.10879 5.11338 5.34053 5.55357 5.69299 5.99122 6.01652 6.35344 6.36377 6.81138 7.39928 8.89857 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.010634 B = 0.005371 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.313856 B = 5211.951567 C = 5991.219882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.029 3.971 3 C -0.129 4.129 4 C 0.073 3.927 5 C -0.159 4.159 6 C -0.692 4.692 7 S 2.708 3.292 8 O -0.991 6.991 9 O -0.967 6.967 10 N -1.091 6.091 11 C 0.281 3.719 12 H 0.015 0.985 13 C -0.157 4.157 14 C -0.531 4.531 15 H 0.080 0.920 16 C 0.016 3.984 17 N -0.918 5.918 18 Si 0.961 3.039 19 H -0.256 1.256 20 H -0.286 1.286 21 H -0.286 1.286 22 C 0.030 3.970 23 C -0.092 4.092 24 N 0.031 4.969 25 O -0.134 6.134 26 O -0.196 6.196 27 H 0.107 0.893 28 H 0.122 0.878 29 H 0.067 0.933 30 H 0.205 0.795 31 H 0.119 0.881 32 H 0.125 0.875 33 H 0.074 0.926 34 H 0.423 0.577 35 H 0.069 0.931 36 H 0.026 0.974 37 H 0.043 0.957 38 H 0.264 0.736 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.219 9.061 -10.017 15.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.027 3.973 3 C -0.148 4.148 4 C 0.072 3.928 5 C -0.215 4.215 6 C -0.779 4.779 7 S 2.796 3.204 8 O -0.981 6.981 9 O -0.957 6.957 10 N -0.854 5.854 11 C 0.175 3.825 12 H 0.033 0.967 13 C -0.216 4.216 14 C -0.570 4.570 15 H 0.098 0.902 16 C -0.184 4.184 17 N -0.557 5.557 18 Si 0.787 3.213 19 H -0.180 1.180 20 H -0.212 1.212 21 H -0.212 1.212 22 C 0.009 3.991 23 C -0.176 4.176 24 N 0.550 4.450 25 O -0.359 6.359 26 O -0.403 6.403 27 H 0.125 0.875 28 H 0.141 0.859 29 H 0.086 0.914 30 H 0.221 0.779 31 H 0.137 0.863 32 H 0.143 0.857 33 H 0.093 0.907 34 H 0.260 0.740 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.420 9.050 -10.606 15.794 hybrid contribution -0.500 -0.424 1.276 1.434 sum -7.919 8.626 -9.331 14.973 Atomic orbital electron populations 1.21284 0.86009 1.05838 1.05465 1.20487 0.99541 0.89677 0.87571 1.21648 0.92602 0.98621 1.01884 1.20372 0.95353 0.94183 0.82913 1.21617 1.01290 0.92684 1.05922 1.30941 1.28031 0.98259 1.20620 1.01362 0.73316 0.73060 0.72627 1.93539 1.80735 1.36861 1.86940 1.93553 1.81385 1.64157 1.56650 1.55337 1.69012 1.39691 1.21326 1.18244 0.92472 0.91309 0.80437 0.96747 1.22185 0.99030 0.98999 1.01417 1.21606 1.47626 0.93737 0.94038 0.90165 1.25721 0.94907 0.97036 1.00783 1.70024 1.48283 1.16041 1.21379 0.85458 0.77247 0.79818 0.78823 1.17955 1.21225 1.21241 1.20617 0.91839 0.99269 0.87336 1.21076 0.92277 0.83855 1.20364 1.43637 1.00457 1.02718 0.98145 1.94474 1.12634 1.89175 1.39597 1.94563 1.72005 1.31775 1.41993 0.87506 0.85906 0.91382 0.77854 0.86302 0.85666 0.90742 0.73985 0.91250 0.95456 0.93746 0.92718 0.83362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 8.65 71.24 0.62 -1.50 16 2 C 0.03 0.67 5.87 -19.86 -0.12 0.56 16 3 C -0.13 -2.51 9.31 22.27 0.21 -2.30 16 4 C 0.07 1.82 5.87 -19.87 -0.12 1.70 16 5 C -0.16 -3.09 8.59 71.24 0.61 -2.48 16 6 C -0.69 -22.22 5.58 22.27 0.12 -22.10 16 7 S 2.71 94.91 4.87 -56.49 -0.28 94.64 16 8 O -0.99 -41.64 16.15 -128.00 -2.07 -43.70 16 9 O -0.97 -32.73 16.41 -128.00 -2.10 -34.83 16 10 N -1.09 -39.19 4.29 -172.53 -0.74 -39.93 16 11 C 0.28 12.71 2.77 44.25 0.12 12.83 16 12 H 0.01 0.73 7.73 -2.39 -0.02 0.72 16 13 C -0.16 -7.38 9.29 71.98 0.67 -6.71 16 14 C -0.53 -25.02 8.75 25.60 0.22 -24.80 16 15 H 0.08 3.48 7.81 -2.91 -0.02 3.46 16 16 C 0.02 0.78 5.30 84.65 0.45 1.23 16 17 N -0.92 -49.36 11.32 21.45 0.24 -49.11 16 18 Si 0.96 39.16 29.54 68.60 2.03 41.19 16 19 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 20 H -0.29 -11.72 7.11 99.48 0.71 -11.01 16 21 H -0.29 -11.80 7.11 99.48 0.71 -11.10 16 22 C 0.03 1.03 9.17 22.27 0.20 1.23 16 23 C -0.09 -2.91 6.48 36.38 0.24 -2.68 16 24 N 0.03 1.04 4.13 -46.46 -0.19 0.85 16 25 O -0.13 -4.33 16.80 18.89 0.32 -4.01 16 26 O -0.20 -7.13 18.95 18.88 0.36 -6.77 16 27 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.12 1.03 8.05 -2.39 -0.02 1.01 16 29 H 0.07 1.26 6.92 -2.39 -0.02 1.24 16 30 H 0.20 1.84 8.06 -2.91 -0.02 1.81 16 31 H 0.12 2.01 8.00 -2.39 -0.02 1.99 16 32 H 0.12 1.54 8.05 -2.38 -0.02 1.52 16 33 H 0.07 1.68 5.53 -2.39 -0.01 1.67 16 34 H 0.42 12.92 8.52 -96.75 -0.82 12.10 16 35 H 0.07 3.61 6.07 -2.39 -0.01 3.59 16 36 H 0.03 1.23 7.51 -2.38 -0.02 1.21 16 37 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.26 13.59 8.31 -92.71 -0.77 12.82 16 39 H 0.15 5.43 7.29 -2.91 -0.02 5.41 16 Total: -1.00 -66.70 343.53 1.08 -65.62 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.28 Total: 21.09 kcal Atomic # 6 Polarization: -48.25 SS G_CDS: 3.23 Total: -45.02 kcal Atomic # 7 Polarization: -87.51 SS G_CDS: -0.69 Total: -88.20 kcal Atomic # 8 Polarization: -85.83 SS G_CDS: -3.49 Total: -89.32 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Atomic # 16 Polarization: 94.91 SS G_CDS: -0.28 Total: 94.64 kcal Total: -66.70 1.08 -65.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191902635.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.813 kcal (2) G-P(sol) polarization free energy of solvation -66.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds