Wall clock time and date at job start Tue Mar 31 2020 15:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99831 * 2 1 4 4 H 1.48501 * 109.47213 * 270.00105 * 3 2 1 5 5 H 1.48502 * 109.46755 * 30.00199 * 3 2 1 6 6 H 1.48502 * 109.46862 * 149.99661 * 3 2 1 7 7 C 1.37875 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00155 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99807 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47259 * 179.97438 * 9 7 2 11 11 S 1.81403 * 109.47643 * 179.97438 * 10 9 7 12 12 O 1.42095 * 110.53777 * 68.37158 * 11 10 9 13 13 O 1.42104 * 110.53920 * 291.62644 * 11 10 9 14 14 N 1.65591 * 104.45107 * 180.02562 * 11 10 9 15 15 C 1.34772 * 120.00312 * 64.99957 * 14 11 10 16 16 O 1.21617 * 120.00223 * 359.97438 * 15 14 11 17 17 C 1.47425 * 120.00252 * 179.97438 * 15 14 11 18 18 C 1.36093 * 126.44975 * 179.97438 * 17 15 14 19 19 O 1.34255 * 106.94938 * 180.30131 * 18 17 15 20 20 C 1.34053 * 108.22576 * 359.57524 * 19 18 17 21 21 C 1.50701 * 125.37886 * 180.16836 * 20 19 18 22 22 C 1.53780 * 113.61157 * 37.81010 * 21 20 19 23 23 C 1.53784 * 87.07794 * 220.01504 * 22 21 20 24 24 C 1.53779 * 113.61712 * 300.30915 * 21 20 19 25 25 N 1.29935 * 109.24194 * 0.43696 * 20 19 18 26 26 H 0.97002 * 120.00439 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47486 * 59.99625 * 9 7 2 28 28 H 1.08999 * 109.47649 * 299.99386 * 9 7 2 29 29 H 1.09002 * 109.46963 * 59.99568 * 10 9 7 30 30 H 1.09008 * 109.47047 * 300.00098 * 10 9 7 31 31 H 0.97004 * 120.00004 * 245.00332 * 14 11 10 32 32 H 1.08002 * 126.52257 * 0.03371 * 18 17 15 33 33 H 1.08998 * 112.84947 * 169.11050 * 21 20 19 34 34 H 1.08997 * 113.61818 * 334.56071 * 22 21 20 35 35 H 1.08998 * 113.61702 * 105.47311 * 22 21 20 36 36 H 1.08998 * 113.61580 * 270.88127 * 23 22 21 37 37 H 1.09003 * 113.68585 * 139.98760 * 23 22 21 38 38 H 1.08996 * 113.61682 * 254.53425 * 24 21 20 39 39 H 1.09004 * 113.60890 * 25.43285 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 0.0000 10 6 4.0216 -2.6364 -0.0001 11 16 5.8357 -2.6364 -0.0001 12 8 6.3342 -2.1460 1.2368 13 8 6.3342 -2.1459 -1.2372 14 7 6.2489 -4.2399 -0.0010 15 6 5.9394 -5.0150 -1.0592 16 8 5.3562 -4.5370 -2.0133 17 6 6.3078 -6.4425 -1.0601 18 6 6.0612 -7.3405 -2.0525 19 8 6.5552 -8.5203 -1.6445 20 6 7.1017 -8.3493 -0.4324 21 6 7.7717 -9.4256 0.3823 22 6 8.5975 -10.4120 -0.4604 23 6 8.0544 -11.5242 0.4523 24 6 6.8482 -10.6083 0.7189 25 7 6.9576 -7.1103 -0.0686 26 1 -0.4851 0.8400 -0.0004 27 1 3.8745 -0.6806 0.8905 28 1 3.8753 -0.6796 -0.8895 29 1 3.6586 -3.1500 -0.8903 30 1 3.6580 -3.1505 0.8897 31 1 6.7137 -4.6214 0.7602 32 1 5.5593 -7.1428 -2.9882 33 1 8.3081 -9.0312 1.2453 34 1 8.2605 -10.4919 -1.4939 35 1 9.6740 -10.2642 -0.3753 36 1 8.6692 -11.7044 1.3342 37 1 7.7978 -12.4406 -0.0792 38 1 6.5126 -10.6189 1.7558 39 1 6.0330 -10.7418 0.0076 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192845673.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:30 Heat of formation + Delta-G solvation = -99.230771 kcal Electronic energy + Delta-G solvation = -25162.521318 eV Core-core repulsion = 21198.735818 eV Total energy + Delta-G solvation = -3963.785500 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.65173 -41.19786 -39.51920 -38.38424 -37.33038 -36.28257 -35.95362 -35.48548 -33.53976 -31.89146 -28.00169 -27.25730 -26.57449 -26.08835 -23.32291 -22.97163 -22.44905 -20.86024 -20.54856 -19.58522 -19.44384 -18.66169 -18.05346 -18.01646 -17.37129 -16.84195 -16.67572 -16.49170 -16.29305 -16.18527 -15.79048 -15.36587 -14.92708 -14.83276 -13.94921 -13.83816 -13.76387 -13.53181 -13.46622 -13.34798 -13.32776 -13.13484 -13.06934 -12.56014 -12.37087 -12.23420 -12.12995 -12.01011 -11.94367 -11.76110 -11.70647 -11.41932 -11.37042 -11.25438 -10.85581 -10.15697 -8.37515 -6.44095 -1.13058 -0.22637 0.64010 1.18076 1.33092 1.33745 1.44290 1.46783 1.75602 2.29160 2.39555 2.51518 2.95097 2.96378 3.20564 3.52588 3.63894 3.65334 3.70364 3.86956 3.93482 3.94549 4.03163 4.34838 4.48161 4.49556 4.73512 4.81029 4.82655 4.91442 4.99283 5.02200 5.07480 5.12290 5.15769 5.41497 5.43648 5.52471 6.06159 6.14698 6.40746 6.61191 7.19865 8.78037 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.025373 B = 0.002562 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.253852 B =10925.559663 C =11239.103849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.013 3.987 3 Si 0.927 3.073 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.245 1.245 7 C -0.529 4.529 8 H 0.047 0.953 9 C -0.015 4.015 10 C -0.576 4.576 11 S 2.603 3.397 12 O -0.960 6.960 13 O -0.965 6.965 14 N -1.031 6.031 15 C 0.629 3.371 16 O -0.513 6.513 17 C -0.112 4.112 18 C 0.052 3.948 19 O -0.186 6.186 20 C 0.220 3.780 21 C -0.029 4.029 22 C -0.130 4.130 23 C -0.130 4.130 24 C -0.131 4.131 25 N -0.480 5.480 26 H 0.271 0.729 27 H 0.042 0.958 28 H 0.033 0.967 29 H 0.137 0.863 30 H 0.149 0.851 31 H 0.449 0.551 32 H 0.264 0.736 33 H 0.144 0.856 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.103 -26.124 0.425 32.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.186 4.186 3 Si 0.749 3.251 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.169 1.169 7 C -0.568 4.568 8 H 0.066 0.934 9 C -0.054 4.054 10 C -0.709 4.709 11 S 2.701 3.299 12 O -0.951 6.951 13 O -0.955 6.955 14 N -0.795 5.795 15 C 0.417 3.583 16 O -0.387 6.387 17 C -0.232 4.232 18 C -0.023 4.023 19 O -0.071 6.071 20 C 0.010 3.990 21 C -0.048 4.048 22 C -0.168 4.168 23 C -0.167 4.167 24 C -0.169 4.169 25 N -0.209 5.209 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.155 0.845 30 H 0.167 0.833 31 H 0.289 0.711 32 H 0.280 0.720 33 H 0.162 0.838 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.118 0.882 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 19.408 -24.718 0.311 31.428 hybrid contribution -0.903 0.421 -0.311 1.044 sum 18.505 -24.297 0.000 30.541 Atomic orbital electron populations 1.70005 1.07913 1.28490 1.51434 1.25893 0.95706 1.03123 0.93833 0.85994 0.80049 0.79128 0.79896 1.18678 1.19686 1.16885 1.21102 0.89994 0.93955 1.51725 0.93419 1.19400 0.97446 0.90177 0.98383 1.30168 1.20553 1.07347 1.12861 1.05406 0.78679 0.72265 0.73511 1.93584 1.79239 1.76978 1.45288 1.93568 1.78575 1.77463 1.45940 1.54730 1.66128 1.31146 1.27531 1.16915 0.75882 0.84884 0.80622 1.91028 1.39974 1.74037 1.33617 1.21315 1.10826 0.95226 0.95836 1.25986 0.95404 0.80392 1.00543 1.84424 1.56392 1.33958 1.32334 1.26836 0.96087 0.93410 0.82708 1.21740 0.97968 0.87839 0.97299 1.23043 1.00602 0.94177 0.98980 1.22812 0.96400 0.97189 1.00326 1.23056 0.97432 0.93120 1.03295 1.70691 1.17237 1.04950 1.27983 0.92026 0.93969 0.94876 0.84491 0.83304 0.71108 0.72009 0.83786 0.89586 0.89282 0.88158 0.89909 0.89512 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.45 13.96 21.45 0.30 -58.15 16 2 C 0.01 0.77 5.47 84.65 0.46 1.24 16 3 Si 0.93 44.27 27.47 68.60 1.88 46.15 16 4 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 7 C -0.53 -30.59 9.66 25.60 0.25 -30.35 16 8 H 0.05 2.96 7.99 -2.92 -0.02 2.93 16 9 C -0.01 -0.71 4.05 29.85 0.12 -0.59 16 10 C -0.58 -22.28 5.82 71.98 0.42 -21.87 16 11 S 2.60 91.57 5.11 -56.49 -0.29 91.28 16 12 O -0.96 -35.94 18.08 -127.65 -2.31 -38.25 16 13 O -0.97 -40.20 17.03 -120.72 -2.06 -42.25 16 14 N -1.03 -28.49 5.60 -175.88 -0.98 -29.48 16 15 C 0.63 18.05 7.55 86.66 0.65 18.71 16 16 O -0.51 -17.45 14.99 12.30 0.18 -17.27 16 17 C -0.11 -2.59 6.99 40.41 0.28 -2.31 16 18 C 0.05 0.88 11.95 67.32 0.80 1.68 16 19 O -0.19 -2.89 10.40 0.37 0.00 -2.88 16 20 C 0.22 3.57 7.33 88.39 0.65 4.22 16 21 C -0.03 -0.27 4.29 -11.01 -0.05 -0.32 16 22 C -0.13 -0.79 7.63 31.12 0.24 -0.55 16 23 C -0.13 -0.50 8.08 31.12 0.25 -0.25 16 24 C -0.13 -0.90 7.63 31.12 0.24 -0.66 16 25 N -0.48 -10.25 11.06 -293.03 -3.24 -13.49 16 26 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 27 H 0.04 1.95 7.20 -2.39 -0.02 1.94 16 28 H 0.03 1.57 7.57 -2.39 -0.02 1.56 16 29 H 0.14 5.30 7.19 -2.39 -0.02 5.28 16 30 H 0.15 5.03 8.14 -2.39 -0.02 5.01 16 31 H 0.45 9.95 8.52 -96.75 -0.82 9.12 16 32 H 0.26 2.73 8.06 -2.91 -0.02 2.70 16 33 H 0.14 1.05 8.14 -2.39 -0.02 1.04 16 34 H 0.09 0.61 7.82 -2.39 -0.02 0.60 16 35 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 37 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.08 0.68 8.09 -2.38 -0.02 0.66 16 Total: -1.00 -79.89 350.50 -1.97 -81.86 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.22 Total: 13.52 kcal Atomic # 6 Polarization: -35.37 SS G_CDS: 4.32 Total: -31.05 kcal Atomic # 7 Polarization: -97.19 SS G_CDS: -3.93 Total: -101.11 kcal Atomic # 8 Polarization: -96.48 SS G_CDS: -4.18 Total: -100.65 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.15 kcal Atomic # 16 Polarization: 91.57 SS G_CDS: -0.29 Total: 91.28 kcal Total: -79.89 -1.97 -81.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192845673.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.369 kcal (2) G-P(sol) polarization free energy of solvation -79.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds