Wall clock time and date at job start Tue Mar 31 2020 14:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86800 * 120.00183 * 2 1 4 4 H 1.48498 * 109.47274 * 269.99941 * 3 2 1 5 5 H 1.48504 * 109.47283 * 29.99754 * 3 2 1 6 6 H 1.48499 * 109.47131 * 149.99757 * 3 2 1 7 7 C 1.38796 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99867 * 359.97438 * 7 2 1 9 9 S 1.76200 * 120.00048 * 180.02562 * 7 2 1 10 10 C 1.80996 * 100.00090 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47240 * 179.97438 * 10 9 7 12 12 O 1.20822 * 119.99958 * 359.97438 * 11 10 9 13 13 O 1.34234 * 120.00068 * 180.02562 * 11 10 9 14 14 C 1.45196 * 116.99938 * 179.97438 * 13 11 10 15 15 C 1.50704 * 109.47016 * 179.97438 * 14 13 11 16 16 C 1.38329 * 119.87644 * 269.72636 * 15 14 13 17 17 C 1.38019 * 120.11986 * 179.76725 * 16 15 14 18 18 C 1.39343 * 119.87487 * 0.50648 * 17 16 15 19 19 C 1.48386 * 120.11826 * 179.72625 * 18 17 16 20 20 C 1.39339 * 120.11788 * 179.74521 * 19 18 17 21 21 C 1.38026 * 119.87317 * 179.76651 * 20 19 18 22 22 C 1.38321 * 120.12115 * 0.50872 * 21 20 19 23 23 C 1.38322 * 120.24381 * 359.74485 * 22 21 20 24 24 C 1.38019 * 120.12279 * 359.97438 * 23 22 21 25 25 C 1.39344 * 119.75744 * 359.74879 * 18 17 16 26 26 C 1.38018 * 119.87983 * 359.97438 * 25 18 17 27 27 H 0.97005 * 119.99703 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47352 * 59.99711 * 10 9 7 29 29 H 1.08997 * 109.47275 * 300.00187 * 10 9 7 30 30 H 1.08996 * 109.47465 * 299.99911 * 14 13 11 31 31 H 1.08999 * 109.47008 * 59.99921 * 14 13 11 32 32 H 1.08003 * 119.93908 * 0.02562 * 16 15 14 33 33 H 1.07993 * 120.06284 * 180.23116 * 17 16 15 34 34 H 1.07997 * 120.06584 * 0.02562 * 20 19 18 35 35 H 1.08001 * 119.93406 * 180.25473 * 21 20 19 36 36 H 1.07995 * 119.87842 * 179.72206 * 22 21 20 37 37 H 1.08001 * 119.93795 * 179.97438 * 23 22 21 38 38 H 1.07995 * 120.06302 * 179.97438 * 24 23 22 39 39 H 1.08000 * 120.05254 * 179.97438 * 25 18 17 40 40 H 1.07997 * 119.93532 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4702 -2.1373 0.0014 9 16 3.7723 -1.2021 0.0012 10 6 4.0865 -2.9845 0.0025 11 6 5.5730 -3.2326 0.0026 12 8 6.3411 -2.2999 0.0014 13 8 6.0437 -4.4897 0.0030 14 6 7.4864 -4.6533 0.0025 15 6 7.8254 -6.1218 0.0037 16 6 7.9865 -6.7908 1.2037 17 6 8.2922 -8.1367 1.2107 18 6 8.4490 -8.8191 0.0059 19 6 8.7836 -10.2647 0.0071 20 6 8.9352 -10.9483 -1.1975 21 6 9.2513 -12.2919 -1.1906 22 6 9.4072 -12.9620 0.0094 23 6 9.2528 -12.2895 1.2082 24 6 8.9424 -10.9447 1.2129 25 6 8.2907 -8.1389 -1.1999 26 6 7.9794 -6.7943 -1.1951 27 1 -0.4850 0.8401 -0.0004 28 1 3.6439 -3.4322 -0.8873 29 1 3.6432 -3.4310 0.8926 30 1 7.9050 -4.1842 -0.8878 31 1 7.9057 -4.1833 0.8921 32 1 7.8687 -6.2599 2.1369 33 1 8.4141 -8.6589 2.1480 34 1 8.8097 -10.4269 -2.1350 35 1 9.3730 -12.8217 -2.1238 36 1 9.6502 -14.0143 0.0102 37 1 9.3753 -12.8177 2.1422 38 1 8.8216 -10.4206 2.1495 39 1 8.4115 -8.6630 -2.1364 40 1 7.8569 -6.2661 -2.1291 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193040055.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:34 Heat of formation + Delta-G solvation = -39.629222 kcal Electronic energy + Delta-G solvation = -22661.528342 eV Core-core repulsion = 19111.176623 eV Total energy + Delta-G solvation = -3550.351720 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.45991 -39.98606 -38.67433 -36.28075 -33.55187 -32.49665 -31.87385 -30.86472 -30.61789 -29.50950 -26.34303 -25.66244 -23.91541 -23.07953 -21.83163 -21.21934 -20.85977 -18.07007 -17.93917 -17.27717 -16.54642 -16.36864 -16.32984 -15.64548 -15.15774 -14.94512 -14.64163 -14.57275 -14.19832 -14.12979 -13.71406 -13.55706 -13.54892 -13.28728 -12.94092 -12.78845 -12.42924 -12.17356 -11.79120 -11.78464 -11.40187 -11.30455 -11.05834 -11.03505 -10.74680 -10.58136 -10.28269 -9.96287 -9.87807 -9.36321 -9.24702 -9.06007 -8.62337 -8.36125 -7.02969 -6.33876 -4.08265 0.24821 0.99508 1.11602 1.44447 2.47266 2.51874 3.05447 3.28589 3.34212 3.45049 3.53600 3.77082 4.17447 4.27544 4.30085 4.45361 4.54711 4.59887 4.63420 4.71921 4.79295 4.90442 5.00669 5.04604 5.04863 5.09683 5.16667 5.39238 5.39787 5.46241 5.57094 5.64425 5.65429 5.75320 5.90935 5.93413 5.95769 6.09960 6.13462 6.27960 6.36567 6.54696 6.55380 6.63797 7.88933 8.02390 8.37811 9.11146 10.75126 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.032963 B = 0.001762 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.221388 B =15887.571398 C =16133.114428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.097 3.903 3 Si 0.856 3.144 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.236 1.236 7 C -0.523 4.523 8 H 0.092 0.908 9 S -0.140 6.140 10 C -0.099 4.099 11 C 0.478 3.522 12 O -0.490 6.490 13 O -0.353 6.353 14 C 0.106 3.894 15 C -0.089 4.089 16 C -0.091 4.091 17 C -0.113 4.113 18 C -0.041 4.041 19 C -0.044 4.044 20 C -0.110 4.110 21 C -0.118 4.118 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.110 4.110 25 C -0.113 4.113 26 C -0.091 4.091 27 H 0.272 0.728 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.827 -24.584 0.102 32.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.160 1.160 7 C -0.670 4.670 8 H 0.110 0.890 9 S 0.086 5.914 10 C -0.247 4.247 11 C 0.320 3.680 12 O -0.376 6.376 13 O -0.271 6.271 14 C 0.032 3.968 15 C -0.089 4.089 16 C -0.109 4.109 17 C -0.131 4.131 18 C -0.041 4.041 19 C -0.044 4.044 20 C -0.128 4.128 21 C -0.136 4.136 22 C -0.139 4.139 23 C -0.136 4.136 24 C -0.128 4.128 25 C -0.131 4.131 26 C -0.109 4.109 27 H 0.082 0.918 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 21.643 -23.336 0.104 31.828 hybrid contribution -0.705 -0.260 -0.032 0.752 sum 20.939 -23.596 0.072 31.547 Atomic orbital electron populations 1.69936 1.05870 1.27860 1.47616 1.24696 0.94464 0.98937 0.93090 0.86744 0.81848 0.83313 0.79977 1.19134 1.19787 1.15972 1.22265 0.87681 0.97778 1.59289 0.89040 1.84792 1.10104 0.98921 1.97566 1.23015 0.89823 1.04482 1.07410 1.23297 0.91993 0.80377 0.72364 1.90666 1.58857 1.43744 1.44336 1.86593 1.24780 1.31068 1.84668 1.21773 0.78810 0.92629 1.03589 1.19632 1.01047 0.94493 0.93752 1.21052 0.97905 0.94207 0.97753 1.21195 1.00181 0.94199 0.97490 1.18828 0.99694 0.91973 0.93624 1.18819 0.99899 0.92096 0.93582 1.21280 0.99441 0.94570 0.97540 1.21120 0.99789 0.94443 0.98272 1.21242 1.00035 1.00013 0.92589 1.21118 0.99813 0.94409 0.98283 1.21277 0.99450 0.94577 0.97526 1.21196 1.00160 0.94237 0.97477 1.21047 0.97885 0.94200 0.97776 0.91820 0.87167 0.87124 0.90202 0.90210 0.85333 0.85425 0.85598 0.85808 0.86004 0.85807 0.85598 0.85427 0.85334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.11 13.97 55.49 0.78 -25.34 16 2 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.34 27.74 -169.99 -4.72 16.63 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.24 -5.84 6.74 56.52 0.38 -5.45 16 7 C -0.52 -14.83 10.04 30.94 0.31 -14.52 16 8 H 0.09 2.71 8.03 -52.49 -0.42 2.29 16 9 S -0.14 -3.47 18.55 -107.50 -1.99 -5.47 16 10 C -0.10 -1.94 6.27 36.01 0.23 -1.72 16 11 C 0.48 8.70 7.98 36.01 0.29 8.98 16 12 O -0.49 -10.09 15.61 -18.75 -0.29 -10.38 16 13 O -0.35 -5.43 10.20 -39.27 -0.40 -5.83 16 14 C 0.11 1.31 5.58 36.01 0.20 1.51 16 15 C -0.09 -0.97 5.52 -104.56 -0.58 -1.55 16 16 C -0.09 -0.90 9.68 -39.63 -0.38 -1.28 16 17 C -0.11 -1.02 9.43 -39.25 -0.37 -1.39 16 18 C -0.04 -0.38 5.88 -104.90 -0.62 -1.00 16 19 C -0.04 -0.38 5.88 -104.90 -0.62 -1.00 16 20 C -0.11 -0.84 9.43 -39.25 -0.37 -1.21 16 21 C -0.12 -0.79 10.03 -39.63 -0.40 -1.18 16 22 C -0.12 -0.77 10.04 -39.52 -0.40 -1.17 16 23 C -0.12 -0.79 10.03 -39.63 -0.40 -1.18 16 24 C -0.11 -0.84 9.43 -39.25 -0.37 -1.21 16 25 C -0.11 -1.02 9.43 -39.25 -0.37 -1.39 16 26 C -0.09 -0.90 9.68 -39.63 -0.38 -1.28 16 27 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.11 2.02 8.14 -51.91 -0.42 1.59 16 29 H 0.11 2.02 8.14 -51.92 -0.42 1.60 16 30 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 31 H 0.08 0.94 8.07 -51.93 -0.42 0.52 16 32 H 0.13 1.10 8.06 -52.48 -0.42 0.67 16 33 H 0.13 0.88 6.21 -52.49 -0.33 0.55 16 34 H 0.13 0.77 6.21 -52.49 -0.33 0.44 16 35 H 0.12 0.57 8.06 -52.49 -0.42 0.14 16 36 H 0.12 0.52 8.06 -52.49 -0.42 0.10 16 37 H 0.12 0.57 8.06 -52.49 -0.42 0.14 16 38 H 0.13 0.77 6.21 -52.49 -0.33 0.44 16 39 H 0.13 0.88 6.21 -52.49 -0.33 0.55 16 40 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 360.75 15.07 5.44 5.44 Total: -1.00 -32.99 360.75 -10.19 -43.18 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -4.68 Total: -0.34 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -4.32 Total: -17.89 kcal Atomic # 7 Polarization: -26.11 SS G_CDS: 0.78 Total: -25.34 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.69 Total: -16.21 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.72 Total: 16.63 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -1.99 Total: -5.47 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.99 -10.19 -43.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193040055.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.548 kcal (2) G-P(sol) polarization free energy of solvation -32.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds