Wall clock time and date at job start Tue Mar 31 2020 14:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86800 * 120.00183 * 2 1 4 4 H 1.48498 * 109.47274 * 269.99941 * 3 2 1 5 5 H 1.48504 * 109.47283 * 29.99754 * 3 2 1 6 6 H 1.48499 * 109.47131 * 149.99757 * 3 2 1 7 7 C 1.38796 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99867 * 359.97438 * 7 2 1 9 9 S 1.76200 * 120.00048 * 180.02562 * 7 2 1 10 10 C 1.80996 * 100.00090 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47240 * 179.97438 * 10 9 7 12 12 O 1.20822 * 119.99958 * 359.97438 * 11 10 9 13 13 O 1.34234 * 120.00068 * 180.02562 * 11 10 9 14 14 C 1.45196 * 116.99938 * 179.97438 * 13 11 10 15 15 C 1.50704 * 109.47016 * 179.97438 * 14 13 11 16 16 C 1.38329 * 119.87644 * 269.72636 * 15 14 13 17 17 C 1.38019 * 120.11986 * 179.76725 * 16 15 14 18 18 C 1.39343 * 119.87487 * 0.50648 * 17 16 15 19 19 C 1.48386 * 120.11826 * 179.72625 * 18 17 16 20 20 C 1.39339 * 120.11788 * 179.74521 * 19 18 17 21 21 C 1.38026 * 119.87317 * 179.76651 * 20 19 18 22 22 C 1.38321 * 120.12115 * 0.50872 * 21 20 19 23 23 C 1.38322 * 120.24381 * 359.74485 * 22 21 20 24 24 C 1.38019 * 120.12279 * 359.97438 * 23 22 21 25 25 C 1.39344 * 119.75744 * 359.74879 * 18 17 16 26 26 C 1.38018 * 119.87983 * 359.97438 * 25 18 17 27 27 H 0.97005 * 119.99703 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47352 * 59.99711 * 10 9 7 29 29 H 1.08997 * 109.47275 * 300.00187 * 10 9 7 30 30 H 1.08996 * 109.47465 * 299.99911 * 14 13 11 31 31 H 1.08999 * 109.47008 * 59.99921 * 14 13 11 32 32 H 1.08003 * 119.93908 * 0.02562 * 16 15 14 33 33 H 1.07993 * 120.06284 * 180.23116 * 17 16 15 34 34 H 1.07997 * 120.06584 * 0.02562 * 20 19 18 35 35 H 1.08001 * 119.93406 * 180.25473 * 21 20 19 36 36 H 1.07995 * 119.87842 * 179.72206 * 22 21 20 37 37 H 1.08001 * 119.93795 * 179.97438 * 23 22 21 38 38 H 1.07995 * 120.06302 * 179.97438 * 24 23 22 39 39 H 1.08000 * 120.05254 * 179.97438 * 25 18 17 40 40 H 1.07997 * 119.93532 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4702 -2.1373 0.0014 9 16 3.7723 -1.2021 0.0012 10 6 4.0865 -2.9845 0.0025 11 6 5.5730 -3.2326 0.0026 12 8 6.3411 -2.2999 0.0014 13 8 6.0437 -4.4897 0.0030 14 6 7.4864 -4.6533 0.0025 15 6 7.8254 -6.1218 0.0037 16 6 7.9865 -6.7908 1.2037 17 6 8.2922 -8.1367 1.2107 18 6 8.4490 -8.8191 0.0059 19 6 8.7836 -10.2647 0.0071 20 6 8.9352 -10.9483 -1.1975 21 6 9.2513 -12.2919 -1.1906 22 6 9.4072 -12.9620 0.0094 23 6 9.2528 -12.2895 1.2082 24 6 8.9424 -10.9447 1.2129 25 6 8.2907 -8.1389 -1.1999 26 6 7.9794 -6.7943 -1.1951 27 1 -0.4850 0.8401 -0.0004 28 1 3.6439 -3.4322 -0.8873 29 1 3.6432 -3.4310 0.8926 30 1 7.9050 -4.1842 -0.8878 31 1 7.9057 -4.1833 0.8921 32 1 7.8687 -6.2599 2.1369 33 1 8.4141 -8.6589 2.1480 34 1 8.8097 -10.4269 -2.1350 35 1 9.3730 -12.8217 -2.1238 36 1 9.6502 -14.0143 0.0102 37 1 9.3753 -12.8177 2.1422 38 1 8.8216 -10.4206 2.1495 39 1 8.4115 -8.6630 -2.1364 40 1 7.8569 -6.2661 -2.1291 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193040055.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:34 Heat of formation + Delta-G solvation = -55.094832 kcal Electronic energy + Delta-G solvation = -22662.198982 eV Core-core repulsion = 19111.176623 eV Total energy + Delta-G solvation = -3551.022359 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.61871 -40.80798 -39.33204 -37.58942 -34.69368 -34.27996 -32.47376 -31.77804 -31.45380 -30.57532 -27.91679 -27.14262 -24.52149 -23.78305 -22.52507 -22.42438 -21.58513 -19.96186 -18.80024 -18.56583 -17.76870 -17.52749 -17.09550 -16.88628 -16.45394 -16.10061 -15.95783 -15.30979 -15.21434 -14.93137 -14.80074 -14.62073 -14.46374 -14.35762 -13.95833 -13.79084 -13.57073 -13.35850 -13.22619 -13.02493 -12.80347 -12.46272 -12.40473 -11.99437 -11.88470 -11.82421 -11.66262 -11.54970 -11.18489 -10.65930 -10.63388 -9.95883 -9.86227 -9.06967 -9.00326 -8.52685 -6.26511 -0.41958 0.40682 0.49456 0.67089 0.93651 1.06263 1.32079 1.40812 1.50670 1.89564 2.23651 2.59694 2.71660 2.85436 3.11115 3.46788 3.66566 3.67127 3.87402 3.95239 3.96253 4.10230 4.11763 4.24534 4.27833 4.31846 4.40191 4.44717 4.45017 4.55682 4.77504 4.82142 5.00637 5.02844 5.16919 5.19664 5.30407 5.33044 5.51832 5.57318 5.61502 5.69406 5.75741 5.92107 6.08156 6.11181 6.61585 6.91135 8.59605 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.032963 B = 0.001762 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.221388 B =15887.571398 C =16133.114428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.047 3.953 3 Si 0.915 3.085 4 H -0.261 1.261 5 H -0.258 1.258 6 H -0.234 1.234 7 C -0.533 4.533 8 H 0.064 0.936 9 S -0.160 6.160 10 C -0.091 4.091 11 C 0.491 3.509 12 O -0.516 6.516 13 O -0.348 6.348 14 C 0.104 3.896 15 C -0.108 4.108 16 C -0.098 4.098 17 C -0.120 4.120 18 C -0.044 4.044 19 C -0.066 4.066 20 C -0.122 4.122 21 C -0.127 4.127 22 C -0.124 4.124 23 C -0.127 4.127 24 C -0.122 4.122 25 C -0.120 4.120 26 C -0.098 4.098 27 H 0.278 0.722 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.138 0.862 33 H 0.146 0.854 34 H 0.136 0.864 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.136 0.864 39 H 0.146 0.854 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.473 -26.019 0.122 34.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.159 4.159 3 Si 0.736 3.264 4 H -0.185 1.185 5 H -0.183 1.183 6 H -0.158 1.158 7 C -0.681 4.681 8 H 0.083 0.917 9 S 0.067 5.933 10 C -0.239 4.239 11 C 0.333 3.667 12 O -0.405 6.405 13 O -0.265 6.265 14 C 0.031 3.969 15 C -0.108 4.108 16 C -0.116 4.116 17 C -0.137 4.137 18 C -0.044 4.044 19 C -0.066 4.066 20 C -0.139 4.139 21 C -0.144 4.144 22 C -0.142 4.142 23 C -0.144 4.144 24 C -0.139 4.139 25 C -0.137 4.137 26 C -0.116 4.116 27 H 0.088 0.912 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.156 0.844 33 H 0.164 0.836 34 H 0.154 0.846 35 H 0.161 0.839 36 H 0.161 0.839 37 H 0.161 0.839 38 H 0.154 0.846 39 H 0.164 0.836 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 23.292 -24.798 0.125 34.022 hybrid contribution -1.139 -0.108 -0.043 1.145 sum 22.154 -24.906 0.082 33.333 Atomic orbital electron populations 1.70016 1.07347 1.29150 1.48666 1.25565 0.95288 1.02307 0.92709 0.85868 0.80723 0.79459 0.80329 1.18550 1.18265 1.15793 1.22416 0.89844 0.96933 1.58876 0.91745 1.84609 1.07030 1.04020 1.97689 1.22949 0.91566 1.00529 1.08880 1.22834 0.91052 0.80959 0.71817 1.90660 1.59285 1.44725 1.45813 1.86569 1.27049 1.29016 1.83884 1.22016 0.76677 0.94055 1.04147 1.19602 1.02857 0.93723 0.94659 1.21234 0.97752 0.94695 0.97873 1.21436 0.99896 0.93992 0.98388 1.19082 0.98836 0.92612 0.93838 1.18943 1.01358 0.91869 0.94474 1.21512 0.99452 0.95235 0.97729 1.21428 0.99348 0.94258 0.99398 1.21601 0.99037 1.01159 0.92405 1.21426 0.99372 0.94223 0.99410 1.21510 0.99457 0.95246 0.97714 1.21436 0.99875 0.94031 0.98373 1.21229 0.97740 0.94686 0.97898 0.91248 0.85759 0.85721 0.89688 0.89698 0.84392 0.83599 0.84627 0.83890 0.83876 0.83888 0.84625 0.83603 0.84400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.02 13.97 21.65 0.30 -54.72 16 2 C 0.05 2.72 5.50 84.86 0.47 3.19 16 3 Si 0.91 43.84 27.74 68.60 1.90 45.74 16 4 H -0.26 -12.18 7.11 99.48 0.71 -11.48 16 5 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.23 -11.09 6.74 99.48 0.67 -10.42 16 7 C -0.53 -30.58 10.04 67.95 0.68 -29.90 16 8 H 0.06 3.92 8.03 -2.91 -0.02 3.89 16 9 S -0.16 -7.86 18.55 -56.49 -1.05 -8.91 16 10 C -0.09 -3.48 6.27 71.24 0.45 -3.03 16 11 C 0.49 17.32 7.98 71.24 0.57 17.89 16 12 O -0.52 -20.80 15.61 21.98 0.34 -20.45 16 13 O -0.35 -10.27 10.20 -51.46 -0.53 -10.80 16 14 C 0.10 2.48 5.58 71.24 0.40 2.88 16 15 C -0.11 -2.26 5.52 -19.82 -0.11 -2.37 16 16 C -0.10 -1.83 9.68 22.24 0.22 -1.61 16 17 C -0.12 -2.02 9.43 22.48 0.21 -1.81 16 18 C -0.04 -0.77 5.88 -20.04 -0.12 -0.89 16 19 C -0.07 -1.07 5.88 -20.04 -0.12 -1.19 16 20 C -0.12 -1.68 9.43 22.48 0.21 -1.47 16 21 C -0.13 -1.44 10.03 22.24 0.22 -1.22 16 22 C -0.12 -1.31 10.04 22.31 0.22 -1.09 16 23 C -0.13 -1.44 10.03 22.24 0.22 -1.22 16 24 C -0.12 -1.68 9.43 22.48 0.21 -1.47 16 25 C -0.12 -2.02 9.43 22.48 0.21 -1.81 16 26 C -0.10 -1.83 9.68 22.24 0.22 -1.62 16 27 H 0.28 15.44 8.31 -92.70 -0.77 14.67 16 28 H 0.12 4.42 8.14 -2.39 -0.02 4.40 16 29 H 0.12 4.44 8.14 -2.40 -0.02 4.42 16 30 H 0.08 1.93 8.08 -2.39 -0.02 1.91 16 31 H 0.08 1.93 8.07 -2.39 -0.02 1.91 16 32 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 33 H 0.15 1.80 6.21 -2.91 -0.02 1.78 16 34 H 0.14 1.46 6.21 -2.91 -0.02 1.44 16 35 H 0.14 0.98 8.06 -2.91 -0.02 0.95 16 36 H 0.14 0.82 8.06 -2.91 -0.02 0.80 16 37 H 0.14 0.98 8.06 -2.91 -0.02 0.95 16 38 H 0.14 1.46 6.21 -2.91 -0.02 1.44 16 39 H 0.15 1.80 6.21 -2.91 -0.02 1.78 16 40 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -70.15 360.75 6.16 -63.98 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 1.02 Total: 11.89 kcal Atomic # 6 Polarization: -30.90 SS G_CDS: 4.17 Total: -26.73 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 0.30 Total: -54.72 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -0.18 Total: -31.25 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.90 Total: 45.74 kcal Atomic # 16 Polarization: -7.86 SS G_CDS: -1.05 Total: -8.91 kcal Total: -70.15 6.16 -63.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193040055.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.890 kcal (2) G-P(sol) polarization free energy of solvation -70.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds