Wall clock time and date at job start Tue Mar 31 2020 14:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29366 * 1 3 3 Si 1.86793 * 120.00339 * 2 1 4 4 H 1.48496 * 109.47411 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47266 * 300.00442 * 3 2 1 6 6 H 1.48502 * 109.47053 * 59.99968 * 3 2 1 7 7 C 1.46625 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99961 * 179.97438 * 7 2 1 9 9 O 1.22348 * 119.99768 * 359.97438 * 7 2 1 10 10 C 1.35567 * 116.99844 * 174.51726 * 9 7 2 11 11 C 1.38790 * 120.15298 * 353.43775 * 10 9 7 12 12 C 1.38099 * 120.06662 * 180.02562 * 11 10 9 13 13 C 1.38511 * 120.39146 * 359.97158 * 12 11 10 14 14 C 1.37909 * 120.31023 * 0.02562 * 13 12 11 15 15 C 1.39599 * 119.92095 * 0.02562 * 14 13 12 16 16 C 1.47605 * 120.18883 * 180.02562 * 15 14 13 17 17 O 1.21586 * 119.99913 * 179.97438 * 16 15 14 18 18 N 1.34778 * 120.00542 * 359.97438 * 16 15 14 19 19 C 1.39838 * 120.00471 * 185.23606 * 18 16 15 20 20 C 1.38920 * 120.07253 * 213.51599 * 19 18 16 21 21 C 1.38081 * 119.92534 * 179.78965 * 20 19 18 22 22 C 1.38310 * 120.07656 * 0.48438 * 21 20 19 23 23 C 1.38267 * 120.14166 * 359.74541 * 22 21 20 24 24 N 1.48013 * 119.96330 * 179.97438 * 23 22 21 25 25 O 1.31700 * 120.00231 * 180.02562 * 24 23 22 26 26 O 1.31700 * 120.00219 * 0.02964 * 24 23 22 27 27 C 1.38127 * 120.07480 * 0.02562 * 23 22 21 28 28 H 0.96997 * 119.99847 * 359.97438 * 1 2 3 29 29 H 1.07996 * 119.96403 * 0.02562 * 11 10 9 30 30 H 1.08001 * 119.79760 * 179.70008 * 12 11 10 31 31 H 1.07995 * 119.84659 * 180.02562 * 13 12 11 32 32 H 1.08002 * 120.04111 * 180.02562 * 14 13 12 33 33 H 0.97009 * 119.99760 * 5.22734 * 18 16 15 34 34 H 1.07992 * 120.03631 * 359.97438 * 20 19 18 35 35 H 1.08002 * 119.96526 * 180.21127 * 21 20 19 36 36 H 1.07999 * 119.92917 * 179.76760 * 22 21 20 37 37 H 1.07999 * 120.04073 * 179.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2937 0.0000 0.0000 3 14 2.2277 1.6176 0.0000 4 1 3.6877 1.3463 -0.0006 5 1 1.8689 2.3965 -1.2125 6 1 1.8690 2.3963 1.2125 7 6 2.0268 -1.2698 -0.0006 8 1 3.1068 -1.2698 -0.0010 9 8 1.4150 -2.3293 -0.0006 10 6 2.1484 -3.4635 -0.1165 11 6 3.5120 -3.3897 -0.3646 12 6 4.2574 -4.5462 -0.4829 13 6 3.6527 -5.7857 -0.3549 14 6 2.2989 -5.8776 -0.1082 15 6 1.5328 -4.7169 0.0127 16 6 0.0836 -4.8083 0.2772 17 8 -0.5803 -3.7951 0.3824 18 7 -0.5039 -6.0149 0.4022 19 6 -1.8922 -6.1054 0.5433 20 6 -2.4486 -7.1122 1.3222 21 6 -3.8197 -7.1961 1.4629 22 6 -4.6394 -6.2853 0.8215 23 6 -4.0890 -5.2848 0.0418 24 7 -4.9699 -4.3125 -0.6433 25 8 -4.4465 -3.3596 -1.3866 26 8 -6.2772 -4.4002 -0.5096 27 6 -2.7181 -5.1924 -0.0994 28 1 -0.4850 0.8400 0.0004 29 1 3.9905 -2.4268 -0.4652 30 1 5.3172 -4.4837 -0.6808 31 1 4.2441 -6.6845 -0.4486 32 1 1.8320 -6.8464 -0.0087 33 1 0.0363 -6.8205 0.3942 34 1 -1.8094 -7.8267 1.8194 35 1 -4.2528 -7.9766 2.0710 36 1 -5.7116 -6.3554 0.9302 37 1 -2.2888 -4.4110 -0.7089 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194120839.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:56 Heat of formation + Delta-G solvation = 58.683618 kcal Electronic energy + Delta-G solvation = -26796.198627 eV Core-core repulsion = 22703.816858 eV Total energy + Delta-G solvation = -4092.381769 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 2.90 seconds Orbital eigenvalues (eV) -40.78358 -40.26039 -38.97474 -37.85403 -36.77783 -34.57776 -34.20272 -32.98231 -31.76776 -31.06876 -29.32214 -29.16318 -26.64165 -25.48999 -23.99298 -22.73125 -22.10833 -21.32362 -20.18518 -18.96685 -18.47656 -17.95194 -17.72712 -16.59008 -16.49445 -16.12346 -15.81357 -15.32217 -14.91438 -14.63446 -14.53156 -14.34204 -14.21394 -13.93197 -13.63562 -13.02025 -12.92572 -12.72383 -12.38253 -12.21350 -12.09670 -11.50660 -11.20132 -11.15968 -11.10795 -10.95833 -10.81736 -10.57442 -10.49504 -10.46732 -9.70506 -9.57161 -9.26649 -9.03197 -8.36274 -8.19511 -7.52690 -7.01196 -3.85403 -0.57086 0.89381 1.13427 1.26771 1.73671 2.30610 2.90942 2.95435 2.98247 3.11631 3.22980 3.65238 3.65923 4.34139 4.38697 4.59963 4.64814 4.78962 4.89433 4.91179 4.96983 5.26307 5.44330 5.51939 5.68857 5.73989 5.79602 5.82434 5.97638 6.14082 6.14813 6.20873 6.62087 6.70668 6.75176 6.81251 6.92866 7.04176 7.12702 7.36122 7.48819 7.74261 7.79646 8.33490 8.76975 9.71303 10.16445 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.010342 B = 0.004296 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.726087 B = 6516.521605 C = 8862.096850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.045 3.955 3 Si 0.946 3.054 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.396 4.396 8 H 0.095 0.905 9 O -0.048 6.048 10 C 0.115 3.885 11 C -0.236 4.236 12 C -0.045 4.045 13 C -0.260 4.260 14 C -0.023 4.023 15 C -0.252 4.252 16 C 0.548 3.452 17 O -0.491 6.491 18 N -0.684 5.684 19 C 0.178 3.822 20 C -0.105 4.105 21 C -0.097 4.097 22 C -0.086 4.086 23 C 0.018 3.982 24 N -0.020 5.020 25 O -0.151 6.151 26 O -0.182 6.182 27 C -0.060 4.060 28 H 0.291 0.709 29 H 0.124 0.876 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.410 0.590 34 H 0.145 0.855 35 H 0.149 0.851 36 H 0.152 0.848 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.933 -13.504 2.647 13.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.175 4.175 3 Si 0.769 3.231 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.474 4.474 8 H 0.112 0.888 9 O 0.063 5.937 10 C 0.052 3.948 11 C -0.255 4.255 12 C -0.064 4.064 13 C -0.279 4.279 14 C -0.042 4.042 15 C -0.257 4.257 16 C 0.343 3.657 17 O -0.365 6.365 18 N -0.332 5.332 19 C 0.080 3.920 20 C -0.126 4.126 21 C -0.116 4.116 22 C -0.106 4.106 23 C -0.068 4.068 24 N 0.461 4.539 25 O -0.349 6.349 26 O -0.374 6.374 27 C -0.082 4.082 28 H 0.103 0.897 29 H 0.142 0.858 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.247 0.753 34 H 0.162 0.838 35 H 0.167 0.833 36 H 0.169 0.831 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -1.479 -12.853 3.035 13.289 hybrid contribution 0.606 0.651 -0.208 0.914 sum -0.872 -12.202 2.827 12.555 Atomic orbital electron populations 1.69001 1.07994 1.30387 1.31820 1.27143 0.95260 0.99279 0.95842 0.85548 0.79975 0.78620 0.79003 1.18048 1.19299 1.19390 1.21257 0.93291 0.83038 1.49770 0.88839 1.80516 1.36779 1.11712 1.64666 1.18942 0.90028 0.85509 1.00302 1.20764 0.93812 0.98731 1.12180 1.20733 0.98000 0.92318 0.95384 1.20222 0.94607 0.96660 1.16444 1.20597 0.93903 0.94851 0.94836 1.18084 0.90933 0.91887 1.24817 1.18621 0.88446 0.81769 0.76826 1.90941 1.64573 1.33850 1.47180 1.43762 1.03545 1.10885 1.74962 1.17471 0.84631 0.95236 0.94704 1.21409 0.95908 0.99005 0.96324 1.20906 0.92351 0.98882 0.99481 1.20996 1.02293 0.92444 0.94912 1.20130 0.89440 0.93920 1.03327 1.50478 1.03117 1.01243 0.99046 1.96360 1.78501 1.24771 1.35307 1.96221 0.90801 1.81093 1.69299 1.21228 0.89808 0.99934 0.97227 0.89697 0.85789 0.87706 0.87838 0.87812 0.75268 0.83764 0.83312 0.83062 0.81166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.03 13.66 55.99 0.76 -20.26 16 2 C 0.04 1.13 5.69 -15.21 -0.09 1.04 16 3 Si 0.95 18.53 29.64 -169.99 -5.04 13.49 16 4 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 5 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 6 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.40 -10.42 9.43 34.11 0.32 -10.10 16 8 H 0.09 2.27 5.13 -52.49 -0.27 2.00 16 9 O -0.05 -1.32 7.37 -0.42 0.00 -1.32 16 10 C 0.11 2.75 6.59 -38.63 -0.25 2.50 16 11 C -0.24 -4.98 9.06 -39.43 -0.36 -5.33 16 12 C -0.05 -0.81 10.03 -39.53 -0.40 -1.21 16 13 C -0.26 -4.30 10.03 -39.60 -0.40 -4.70 16 14 C -0.02 -0.39 9.53 -39.19 -0.37 -0.76 16 15 C -0.25 -5.27 5.89 -104.82 -0.62 -5.89 16 16 C 0.55 11.35 7.50 -12.44 -0.09 11.26 16 17 O -0.49 -12.57 12.88 -16.57 -0.21 -12.78 16 18 N -0.68 -10.18 5.28 -10.78 -0.06 -10.24 16 19 C 0.18 2.52 6.27 -83.72 -0.52 2.00 16 20 C -0.11 -1.03 9.96 -39.39 -0.39 -1.42 16 21 C -0.10 -0.85 10.04 -39.61 -0.40 -1.25 16 22 C -0.09 -1.00 9.58 -39.54 -0.38 -1.37 16 23 C 0.02 0.29 6.88 -79.98 -0.55 -0.26 16 24 N -0.02 -0.37 4.98 33.95 0.17 -0.20 16 25 O -0.15 -3.22 19.15 -31.57 -0.60 -3.82 16 26 O -0.18 -3.26 19.15 -31.57 -0.60 -3.87 16 27 C -0.06 -1.03 8.18 -39.39 -0.32 -1.35 16 28 H 0.29 7.10 8.26 -40.82 -0.34 6.77 16 29 H 0.12 2.56 5.79 -52.49 -0.30 2.26 16 30 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.10 1.42 8.06 -52.49 -0.42 0.99 16 32 H 0.10 1.28 6.42 -52.49 -0.34 0.94 16 33 H 0.41 4.48 6.87 -40.82 -0.28 4.20 16 34 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.15 1.48 7.57 -52.49 -0.40 1.08 16 37 H 0.17 3.55 5.96 -52.49 -0.31 3.24 16 LS Contribution 336.34 15.07 5.07 5.07 Total: -1.00 -33.18 336.34 -8.06 -41.25 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -2.72 Total: 9.54 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -4.82 Total: -16.85 kcal Atomic # 7 Polarization: -31.57 SS G_CDS: 0.88 Total: -30.70 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -1.43 Total: -21.80 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.04 Total: 13.49 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.18 -8.06 -41.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194120839.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.933 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.90 seconds