Wall clock time and date at job start Tue Mar 31 2020 14:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29366 * 1 3 3 Si 1.86793 * 120.00339 * 2 1 4 4 H 1.48496 * 109.47411 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47266 * 300.00442 * 3 2 1 6 6 H 1.48502 * 109.47053 * 59.99968 * 3 2 1 7 7 C 1.46625 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99961 * 179.97438 * 7 2 1 9 9 O 1.22348 * 119.99768 * 359.97438 * 7 2 1 10 10 C 1.35567 * 116.99844 * 174.51726 * 9 7 2 11 11 C 1.38790 * 120.15298 * 353.43775 * 10 9 7 12 12 C 1.38099 * 120.06662 * 180.02562 * 11 10 9 13 13 C 1.38511 * 120.39146 * 359.97158 * 12 11 10 14 14 C 1.37909 * 120.31023 * 0.02562 * 13 12 11 15 15 C 1.39599 * 119.92095 * 0.02562 * 14 13 12 16 16 C 1.47605 * 120.18883 * 180.02562 * 15 14 13 17 17 O 1.21586 * 119.99913 * 179.97438 * 16 15 14 18 18 N 1.34778 * 120.00542 * 359.97438 * 16 15 14 19 19 C 1.39838 * 120.00471 * 185.23606 * 18 16 15 20 20 C 1.38920 * 120.07253 * 213.51599 * 19 18 16 21 21 C 1.38081 * 119.92534 * 179.78965 * 20 19 18 22 22 C 1.38310 * 120.07656 * 0.48438 * 21 20 19 23 23 C 1.38267 * 120.14166 * 359.74541 * 22 21 20 24 24 N 1.48013 * 119.96330 * 179.97438 * 23 22 21 25 25 O 1.31700 * 120.00231 * 180.02562 * 24 23 22 26 26 O 1.31700 * 120.00219 * 0.02964 * 24 23 22 27 27 C 1.38127 * 120.07480 * 0.02562 * 23 22 21 28 28 H 0.96997 * 119.99847 * 359.97438 * 1 2 3 29 29 H 1.07996 * 119.96403 * 0.02562 * 11 10 9 30 30 H 1.08001 * 119.79760 * 179.70008 * 12 11 10 31 31 H 1.07995 * 119.84659 * 180.02562 * 13 12 11 32 32 H 1.08002 * 120.04111 * 180.02562 * 14 13 12 33 33 H 0.97009 * 119.99760 * 5.22734 * 18 16 15 34 34 H 1.07992 * 120.03631 * 359.97438 * 20 19 18 35 35 H 1.08002 * 119.96526 * 180.21127 * 21 20 19 36 36 H 1.07999 * 119.92917 * 179.76760 * 22 21 20 37 37 H 1.07999 * 120.04073 * 179.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2937 0.0000 0.0000 3 14 2.2277 1.6176 0.0000 4 1 3.6877 1.3463 -0.0006 5 1 1.8689 2.3965 -1.2125 6 1 1.8690 2.3963 1.2125 7 6 2.0268 -1.2698 -0.0006 8 1 3.1068 -1.2698 -0.0010 9 8 1.4150 -2.3293 -0.0006 10 6 2.1484 -3.4635 -0.1165 11 6 3.5120 -3.3897 -0.3646 12 6 4.2574 -4.5462 -0.4829 13 6 3.6527 -5.7857 -0.3549 14 6 2.2989 -5.8776 -0.1082 15 6 1.5328 -4.7169 0.0127 16 6 0.0836 -4.8083 0.2772 17 8 -0.5803 -3.7951 0.3824 18 7 -0.5039 -6.0149 0.4022 19 6 -1.8922 -6.1054 0.5433 20 6 -2.4486 -7.1122 1.3222 21 6 -3.8197 -7.1961 1.4629 22 6 -4.6394 -6.2853 0.8215 23 6 -4.0890 -5.2848 0.0418 24 7 -4.9699 -4.3125 -0.6433 25 8 -4.4465 -3.3596 -1.3866 26 8 -6.2772 -4.4002 -0.5096 27 6 -2.7181 -5.1924 -0.0994 28 1 -0.4850 0.8400 0.0004 29 1 3.9905 -2.4268 -0.4652 30 1 5.3172 -4.4837 -0.6808 31 1 4.2441 -6.6845 -0.4486 32 1 1.8320 -6.8464 -0.0087 33 1 0.0363 -6.8205 0.3942 34 1 -1.8094 -7.8267 1.8194 35 1 -4.2528 -7.9766 2.0710 36 1 -5.7116 -6.3554 0.9302 37 1 -2.2888 -4.4110 -0.7089 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194120839.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:55 Heat of formation + Delta-G solvation = 35.926557 kcal Electronic energy + Delta-G solvation = -26797.185447 eV Core-core repulsion = 22703.816858 eV Total energy + Delta-G solvation = -4093.368590 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.27299 -41.70512 -40.46859 -39.23893 -38.38178 -36.00279 -35.67921 -34.71999 -32.85954 -32.54015 -30.80488 -30.62520 -27.95782 -27.23761 -25.41726 -23.95276 -23.44668 -22.86786 -21.66959 -20.41050 -20.09375 -19.47253 -19.16111 -18.07535 -17.56040 -17.45104 -17.22595 -16.66570 -16.50883 -16.27432 -16.11790 -15.91755 -15.48441 -15.39354 -14.90845 -14.52504 -14.36454 -14.18718 -13.86779 -13.26391 -13.23772 -13.08664 -12.71915 -12.67603 -12.61803 -12.37651 -12.31024 -12.07804 -12.03117 -11.81040 -11.37479 -11.02656 -10.77288 -10.54787 -9.85877 -9.50867 -9.19144 -8.73890 -5.77729 -1.94156 -0.22468 -0.03472 0.03774 0.20788 0.71305 1.27082 1.39935 1.46887 1.85388 1.94055 2.06809 2.33734 2.67285 3.23507 3.32133 3.34958 3.45088 3.68201 3.85378 3.92120 3.98162 4.09069 4.27430 4.33652 4.54725 4.59160 4.69435 4.71127 4.90767 4.92756 4.93808 5.05432 5.14964 5.20545 5.43100 5.49859 5.56488 5.57011 5.77816 5.80981 6.23324 6.42965 6.60330 7.24527 8.03051 8.51194 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.010342 B = 0.004296 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.726087 B = 6516.521605 C = 8862.096850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C -0.016 4.016 3 Si 1.022 2.978 4 H -0.243 1.243 5 H -0.264 1.264 6 H -0.263 1.263 7 C -0.445 4.445 8 H 0.098 0.902 9 O -0.116 6.116 10 C 0.105 3.895 11 C -0.268 4.268 12 C -0.033 4.033 13 C -0.226 4.226 14 C -0.016 4.016 15 C -0.264 4.264 16 C 0.546 3.454 17 O -0.550 6.550 18 N -0.659 5.659 19 C 0.151 3.849 20 C -0.060 4.060 21 C -0.072 4.072 22 C -0.063 4.063 23 C -0.012 4.012 24 N -0.014 5.014 25 O -0.284 6.284 26 O -0.119 6.119 27 C -0.095 4.095 28 H 0.288 0.712 29 H 0.117 0.883 30 H 0.147 0.853 31 H 0.159 0.841 32 H 0.164 0.836 33 H 0.433 0.567 34 H 0.201 0.799 35 H 0.214 0.786 36 H 0.181 0.819 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.452 -21.267 5.045 21.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.225 4.225 3 Si 0.839 3.161 4 H -0.165 1.165 5 H -0.189 1.189 6 H -0.188 1.188 7 C -0.523 4.523 8 H 0.115 0.885 9 O -0.011 6.011 10 C 0.047 3.953 11 C -0.287 4.287 12 C -0.051 4.051 13 C -0.244 4.244 14 C -0.034 4.034 15 C -0.269 4.269 16 C 0.340 3.660 17 O -0.428 6.428 18 N -0.309 5.309 19 C 0.054 3.946 20 C -0.081 4.081 21 C -0.090 4.090 22 C -0.083 4.083 23 C -0.099 4.099 24 N 0.460 4.540 25 O -0.450 6.450 26 O -0.335 6.335 27 C -0.117 4.117 28 H 0.099 0.901 29 H 0.134 0.866 30 H 0.165 0.835 31 H 0.177 0.823 32 H 0.181 0.819 33 H 0.275 0.725 34 H 0.218 0.782 35 H 0.231 0.769 36 H 0.198 0.802 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.171 -20.557 5.291 21.228 hybrid contribution 0.160 1.961 -0.785 2.119 sum 0.331 -18.596 4.506 19.137 Atomic orbital electron populations 1.69156 1.10163 1.30813 1.38273 1.28365 0.96027 1.02729 0.95342 0.84502 0.78913 0.73600 0.79047 1.16543 1.18867 1.18793 1.21483 0.93483 0.83694 1.53626 0.88470 1.80567 1.37585 1.12575 1.70381 1.20013 0.91597 0.86503 0.97214 1.20989 0.93143 1.00406 1.14200 1.21332 0.99946 0.91511 0.92355 1.21015 0.94685 0.97916 1.10829 1.21243 0.94132 0.95481 0.92590 1.18765 0.91957 0.92580 1.23608 1.18798 0.88511 0.82771 0.75928 1.90972 1.65789 1.36690 1.49346 1.43228 1.04309 1.09583 1.73741 1.17752 0.83625 0.96660 0.96532 1.22079 0.97254 0.96354 0.92400 1.21706 0.91325 0.98331 0.97659 1.21642 1.04356 0.90271 0.92053 1.20536 0.88731 0.95077 1.05525 1.50901 1.03192 1.01332 0.98562 1.96409 1.78580 1.28774 1.41227 1.96124 0.91855 1.79307 1.66173 1.20948 0.91372 1.00462 0.98950 0.90064 0.86550 0.83548 0.82311 0.81895 0.72494 0.78196 0.76885 0.80178 0.87163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -54.22 13.66 23.22 0.32 -53.91 16 2 C -0.02 -0.90 5.69 87.25 0.50 -0.40 16 3 Si 1.02 42.72 29.64 68.60 2.03 44.76 16 4 H -0.24 -9.27 7.11 99.48 0.71 -8.56 16 5 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 6 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 7 C -0.45 -26.50 9.43 70.01 0.66 -25.84 16 8 H 0.10 5.29 5.13 -2.91 -0.01 5.27 16 9 O -0.12 -7.23 7.37 74.67 0.55 -6.68 16 10 C 0.10 5.33 6.59 22.89 0.15 5.48 16 11 C -0.27 -11.50 9.06 22.37 0.20 -11.30 16 12 C -0.03 -1.04 10.03 22.30 0.22 -0.82 16 13 C -0.23 -5.93 10.03 22.26 0.22 -5.71 16 14 C -0.02 -0.46 9.53 22.52 0.21 -0.24 16 15 C -0.26 -11.05 5.89 -19.99 -0.12 -11.17 16 16 C 0.55 23.55 7.50 86.72 0.65 24.20 16 17 O -0.55 -31.49 12.88 16.91 0.22 -31.27 16 18 N -0.66 -18.36 5.28 -306.29 -1.62 -19.98 16 19 C 0.15 4.02 6.27 38.18 0.24 4.26 16 20 C -0.06 -0.77 9.96 22.40 0.22 -0.55 16 21 C -0.07 -0.70 10.04 22.25 0.22 -0.48 16 22 C -0.06 -1.18 9.58 22.29 0.21 -0.97 16 23 C -0.01 -0.38 6.88 36.36 0.25 -0.13 16 24 N -0.01 -0.57 4.98 -46.51 -0.23 -0.80 16 25 O -0.28 -14.32 19.15 3.51 0.07 -14.25 16 26 O -0.12 -4.23 19.15 3.51 0.07 -4.17 16 27 C -0.09 -3.52 8.18 22.40 0.18 -3.33 16 28 H 0.29 16.52 8.26 -92.71 -0.77 15.76 16 29 H 0.12 5.12 5.79 -2.91 -0.02 5.10 16 30 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 31 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 32 H 0.16 2.69 6.42 -2.91 -0.02 2.68 16 33 H 0.43 7.19 6.87 -92.70 -0.64 6.55 16 34 H 0.20 0.52 8.06 -2.91 -0.02 0.49 16 35 H 0.21 -0.31 8.06 -2.91 -0.02 -0.34 16 36 H 0.18 2.43 7.57 -2.91 -0.02 2.41 16 37 H 0.11 5.48 5.96 -2.91 -0.02 5.46 16 Total: -1.00 -97.92 336.34 5.98 -91.94 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.53 Total: 21.35 kcal Atomic # 6 Polarization: -31.03 SS G_CDS: 4.04 Total: -27.00 kcal Atomic # 7 Polarization: -73.15 SS G_CDS: -1.53 Total: -74.68 kcal Atomic # 8 Polarization: -57.27 SS G_CDS: 0.90 Total: -56.37 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.76 kcal Total: -97.92 5.98 -91.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194120839.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.868 kcal (2) G-P(sol) polarization free energy of solvation -97.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds