Wall clock time and date at job start Tue Mar 31 2020 14:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29378 * 1 3 3 Si 1.86806 * 119.99687 * 2 1 4 4 H 1.48501 * 109.47093 * 239.99349 * 3 2 1 5 5 H 1.48493 * 109.46974 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46958 * 119.99862 * 3 2 1 7 7 C 1.46610 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99776 * 180.02562 * 7 2 1 9 9 O 1.22345 * 120.00290 * 0.02562 * 7 2 1 10 10 C 1.35570 * 117.00185 * 185.07084 * 9 7 2 11 11 C 1.38785 * 120.15692 * 354.46624 * 10 9 7 12 12 C 1.38087 * 120.07505 * 180.02562 * 11 10 9 13 13 C 1.38524 * 120.38447 * 359.97438 * 12 11 10 14 14 C 1.37898 * 120.31316 * 0.02562 * 13 12 11 15 15 C 1.39601 * 119.92053 * 359.97438 * 14 13 12 16 16 C 1.47612 * 120.19253 * 180.02562 * 15 14 13 17 17 O 1.21578 * 120.00061 * 179.97438 * 16 15 14 18 18 N 1.34785 * 119.99812 * 359.97438 * 16 15 14 19 19 C 1.39842 * 120.00077 * 184.48014 * 18 16 15 20 20 C 1.38895 * 120.06875 * 324.62264 * 19 18 16 21 21 C 1.38110 * 119.91840 * 179.80939 * 20 19 18 22 22 C 1.38277 * 120.07777 * 0.44582 * 21 20 19 23 23 N 1.48018 * 119.92867 * 179.76575 * 22 21 20 24 24 O 1.31703 * 120.00060 * 180.02562 * 23 22 21 25 25 O 1.31696 * 120.00131 * 0.02562 * 23 22 21 26 26 C 1.38289 * 120.14419 * 359.78764 * 22 21 20 27 27 C 1.38099 * 120.07347 * 359.97438 * 26 22 21 28 28 H 0.96992 * 120.00066 * 0.02562 * 1 2 3 29 29 H 1.08007 * 119.96018 * 359.97438 * 11 10 9 30 30 H 1.07995 * 119.80969 * 180.02562 * 12 11 10 31 31 H 1.08005 * 119.84029 * 179.72199 * 13 12 11 32 32 H 1.08001 * 120.04200 * 179.97438 * 14 13 12 33 33 H 0.97007 * 119.99514 * 4.48820 * 18 16 15 34 34 H 1.07996 * 120.03880 * 0.02562 * 20 19 18 35 35 H 1.08008 * 119.95891 * 180.18866 * 21 20 19 36 36 H 1.08006 * 119.96248 * 179.97438 * 26 22 21 37 37 H 1.08000 * 120.03731 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2938 0.0000 0.0000 3 14 2.2277 1.6178 0.0000 4 1 3.0816 1.6965 -1.2124 5 1 1.2627 2.7464 -0.0006 6 1 3.0815 1.6965 1.2126 7 6 2.0269 -1.2697 0.0006 8 1 3.1069 -1.2696 0.0010 9 8 1.4152 -2.3293 0.0006 10 6 2.1495 -3.4638 0.1079 11 6 3.5358 -3.4008 0.0960 12 6 4.2821 -4.5576 0.2048 13 6 3.6553 -5.7868 0.3270 14 6 2.2787 -5.8679 0.3406 15 6 1.5117 -4.7066 0.2314 16 6 0.0378 -4.7864 0.2459 17 8 -0.6268 -3.7728 0.1510 18 7 -0.5712 -5.9830 0.3643 19 6 -1.9646 -6.0694 0.2840 20 6 -2.7559 -5.0515 0.8006 21 6 -4.1317 -5.1381 0.7161 22 6 -4.7217 -6.2409 0.1263 23 7 -6.1966 -6.3328 0.0422 24 8 -6.7601 -7.3828 -0.5187 25 8 -6.9455 -5.3647 0.5282 26 6 -3.9368 -7.2584 -0.3846 27 6 -2.5604 -7.1757 -0.3078 28 1 -0.4850 0.8400 -0.0004 29 1 4.0316 -2.4460 0.0006 30 1 5.3606 -4.5035 0.1955 31 1 4.2475 -6.6865 0.4071 32 1 1.7946 -6.8287 0.4357 33 1 -0.0428 -6.7842 0.5053 34 1 -2.2958 -4.1916 1.2646 35 1 -4.7476 -4.3455 1.1148 36 1 -4.4007 -8.1186 -0.8442 37 1 -1.9480 -7.9709 -0.7066 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194121359.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:02 Heat of formation + Delta-G solvation = 55.858462 kcal Electronic energy + Delta-G solvation = -26342.246439 eV Core-core repulsion = 22249.742161 eV Total energy + Delta-G solvation = -4092.504277 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 3.02 seconds Orbital eigenvalues (eV) -40.84887 -40.33556 -39.15562 -37.87120 -36.85276 -34.64842 -34.35330 -33.06905 -31.46342 -31.29360 -29.85285 -29.25692 -26.38026 -25.48160 -23.63779 -23.33012 -22.12222 -21.38396 -20.26810 -18.78622 -18.65066 -18.39681 -17.86657 -17.26760 -16.57317 -15.91312 -15.36600 -15.04683 -14.91025 -14.70382 -14.63571 -14.47195 -14.16249 -13.99824 -13.68414 -13.42578 -13.01964 -12.90611 -12.77976 -12.28837 -11.76022 -11.56270 -11.27783 -11.24875 -11.17367 -11.07294 -10.95697 -10.67293 -10.63942 -10.53987 -9.73734 -9.49867 -9.33853 -9.08903 -8.54078 -8.29294 -7.61379 -7.10772 -3.94408 -0.64188 0.91682 1.08342 1.21826 1.64925 2.23024 2.84199 2.88168 2.90855 3.05293 3.16115 3.56334 3.57822 4.28073 4.31468 4.42471 4.72490 4.75856 4.80845 4.91873 5.08535 5.23941 5.38965 5.46534 5.57961 5.66296 5.68467 5.92409 5.99484 6.05356 6.08799 6.18305 6.54169 6.62895 6.67249 6.72952 6.83911 6.94632 7.04445 7.28324 7.39275 7.62861 7.71103 8.24561 8.64386 9.61518 10.06691 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.012331 B = 0.003357 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.226908 B = 8338.550209 C =10491.952492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.046 3.954 3 Si 0.947 3.053 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.261 1.261 7 C -0.396 4.396 8 H 0.095 0.905 9 O -0.049 6.049 10 C 0.116 3.884 11 C -0.236 4.236 12 C -0.044 4.044 13 C -0.257 4.257 14 C -0.023 4.023 15 C -0.252 4.252 16 C 0.549 3.451 17 O -0.489 6.489 18 N -0.682 5.682 19 C 0.235 3.765 20 C -0.127 4.127 21 C -0.025 4.025 22 C -0.041 4.041 23 N -0.006 5.006 24 O -0.192 6.192 25 O -0.185 6.185 26 C -0.027 4.027 27 C -0.162 4.162 28 H 0.291 0.709 29 H 0.125 0.875 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.411 0.589 34 H 0.169 0.831 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.540 -10.054 1.194 10.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.174 4.174 3 Si 0.769 3.231 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.185 1.185 7 C -0.474 4.474 8 H 0.112 0.888 9 O 0.062 5.938 10 C 0.053 3.947 11 C -0.255 4.255 12 C -0.063 4.063 13 C -0.277 4.277 14 C -0.042 4.042 15 C -0.258 4.258 16 C 0.345 3.655 17 O -0.363 6.363 18 N -0.328 5.328 19 C 0.135 3.865 20 C -0.149 4.149 21 C -0.046 4.046 22 C -0.130 4.130 23 N 0.469 4.531 24 O -0.382 6.382 25 O -0.377 6.377 26 C -0.048 4.048 27 C -0.183 4.183 28 H 0.103 0.897 29 H 0.143 0.857 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.249 0.751 34 H 0.186 0.814 35 H 0.173 0.827 36 H 0.172 0.828 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.248 -8.929 1.113 9.084 hybrid contribution 0.413 0.261 -0.079 0.495 sum 1.661 -8.668 1.034 8.886 Atomic orbital electron populations 1.68984 1.08011 1.30540 1.32087 1.27122 0.95266 0.99256 0.95718 0.85661 0.79314 0.77854 0.80258 1.18550 1.19563 1.18505 1.21184 0.93346 0.82983 1.49884 0.88818 1.80448 1.36903 1.11697 1.64735 1.18900 0.89423 0.85779 1.00549 1.20762 0.93098 0.98841 1.12776 1.20749 0.98208 0.92287 0.95091 1.20251 0.93852 0.96939 1.16654 1.20611 0.94002 0.94830 0.94753 1.18072 0.89588 0.92334 1.25777 1.18620 0.88701 0.81680 0.76524 1.90906 1.65512 1.33341 1.46550 1.43969 1.03627 1.12289 1.72867 1.18270 0.84528 0.93816 0.89871 1.21558 0.91248 1.01207 1.00839 1.21050 0.95316 0.95062 0.93124 1.20295 0.76367 1.01597 1.14696 1.50437 1.04761 1.00973 0.96943 1.96240 1.77332 1.19191 1.45425 1.96270 1.62342 1.29050 1.50000 1.20794 0.92821 0.96870 0.94265 1.20927 0.93570 1.00450 1.03400 0.89662 0.85721 0.87606 0.87731 0.87740 0.75132 0.81406 0.82654 0.82772 0.83271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 54. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.99 13.66 55.99 0.76 -19.22 16 2 C 0.05 1.11 5.69 -15.21 -0.09 1.03 16 3 Si 0.95 17.66 29.64 -169.99 -5.04 12.63 16 4 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 5 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 6 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 7 C -0.40 -9.98 9.48 34.11 0.32 -9.66 16 8 H 0.09 2.16 5.03 -52.49 -0.26 1.90 16 9 O -0.05 -1.28 7.37 -0.43 0.00 -1.29 16 10 C 0.12 2.65 6.60 -38.63 -0.25 2.40 16 11 C -0.24 -4.75 9.12 -39.43 -0.36 -5.11 16 12 C -0.04 -0.76 10.03 -39.53 -0.40 -1.15 16 13 C -0.26 -4.07 10.03 -39.60 -0.40 -4.46 16 14 C -0.02 -0.37 9.53 -39.20 -0.37 -0.74 16 15 C -0.25 -5.01 5.89 -104.81 -0.62 -5.62 16 16 C 0.55 10.62 7.61 -12.43 -0.09 10.52 16 17 O -0.49 -11.57 12.62 -16.56 -0.21 -11.78 16 18 N -0.68 -9.43 5.28 -10.78 -0.06 -9.49 16 19 C 0.24 3.13 6.29 -83.72 -0.53 2.60 16 20 C -0.13 -1.89 8.69 -39.39 -0.34 -2.23 16 21 C -0.03 -0.35 9.57 -39.61 -0.38 -0.73 16 22 C -0.04 -0.57 6.89 -79.91 -0.55 -1.12 16 23 N -0.01 -0.09 4.98 33.98 0.17 0.08 16 24 O -0.19 -3.08 19.15 -31.57 -0.60 -3.69 16 25 O -0.19 -3.15 19.15 -31.57 -0.60 -3.75 16 26 C -0.03 -0.30 9.57 -39.61 -0.38 -0.68 16 27 C -0.16 -1.67 9.97 -39.39 -0.39 -2.06 16 28 H 0.29 6.73 8.26 -40.82 -0.34 6.39 16 29 H 0.13 2.45 5.69 -52.48 -0.30 2.15 16 30 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.10 1.36 8.06 -52.48 -0.42 0.94 16 32 H 0.10 1.21 6.41 -52.49 -0.34 0.87 16 33 H 0.41 4.18 6.87 -40.82 -0.28 3.90 16 34 H 0.17 2.89 6.25 -52.49 -0.33 2.56 16 35 H 0.16 2.00 7.57 -52.48 -0.40 1.61 16 36 H 0.15 1.41 7.57 -52.48 -0.40 1.01 16 37 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 335.92 15.07 5.06 5.06 Total: -1.00 -30.57 335.92 -8.05 -38.62 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -2.70 Total: 9.85 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -4.83 Total: -17.02 kcal Atomic # 7 Polarization: -29.51 SS G_CDS: 0.88 Total: -28.63 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -1.42 Total: -20.51 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.04 Total: 12.63 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.57 -8.05 -38.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194121359.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.478 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.02 seconds