Wall clock time and date at job start Tue Mar 31 2020 14:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29378 * 1 3 3 Si 1.86806 * 119.99687 * 2 1 4 4 H 1.48501 * 109.47093 * 239.99349 * 3 2 1 5 5 H 1.48493 * 109.46974 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46958 * 119.99862 * 3 2 1 7 7 C 1.46610 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99776 * 180.02562 * 7 2 1 9 9 O 1.22345 * 120.00290 * 0.02562 * 7 2 1 10 10 C 1.35570 * 117.00185 * 185.07084 * 9 7 2 11 11 C 1.38785 * 120.15692 * 354.46624 * 10 9 7 12 12 C 1.38087 * 120.07505 * 180.02562 * 11 10 9 13 13 C 1.38524 * 120.38447 * 359.97438 * 12 11 10 14 14 C 1.37898 * 120.31316 * 0.02562 * 13 12 11 15 15 C 1.39601 * 119.92053 * 359.97438 * 14 13 12 16 16 C 1.47612 * 120.19253 * 180.02562 * 15 14 13 17 17 O 1.21578 * 120.00061 * 179.97438 * 16 15 14 18 18 N 1.34785 * 119.99812 * 359.97438 * 16 15 14 19 19 C 1.39842 * 120.00077 * 184.48014 * 18 16 15 20 20 C 1.38895 * 120.06875 * 324.62264 * 19 18 16 21 21 C 1.38110 * 119.91840 * 179.80939 * 20 19 18 22 22 C 1.38277 * 120.07777 * 0.44582 * 21 20 19 23 23 N 1.48018 * 119.92867 * 179.76575 * 22 21 20 24 24 O 1.31703 * 120.00060 * 180.02562 * 23 22 21 25 25 O 1.31696 * 120.00131 * 0.02562 * 23 22 21 26 26 C 1.38289 * 120.14419 * 359.78764 * 22 21 20 27 27 C 1.38099 * 120.07347 * 359.97438 * 26 22 21 28 28 H 0.96992 * 120.00066 * 0.02562 * 1 2 3 29 29 H 1.08007 * 119.96018 * 359.97438 * 11 10 9 30 30 H 1.07995 * 119.80969 * 180.02562 * 12 11 10 31 31 H 1.08005 * 119.84029 * 179.72199 * 13 12 11 32 32 H 1.08001 * 120.04200 * 179.97438 * 14 13 12 33 33 H 0.97007 * 119.99514 * 4.48820 * 18 16 15 34 34 H 1.07996 * 120.03880 * 0.02562 * 20 19 18 35 35 H 1.08008 * 119.95891 * 180.18866 * 21 20 19 36 36 H 1.08006 * 119.96248 * 179.97438 * 26 22 21 37 37 H 1.08000 * 120.03731 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2938 0.0000 0.0000 3 14 2.2277 1.6178 0.0000 4 1 3.0816 1.6965 -1.2124 5 1 1.2627 2.7464 -0.0006 6 1 3.0815 1.6965 1.2126 7 6 2.0269 -1.2697 0.0006 8 1 3.1069 -1.2696 0.0010 9 8 1.4152 -2.3293 0.0006 10 6 2.1495 -3.4638 0.1079 11 6 3.5358 -3.4008 0.0960 12 6 4.2821 -4.5576 0.2048 13 6 3.6553 -5.7868 0.3270 14 6 2.2787 -5.8679 0.3406 15 6 1.5117 -4.7066 0.2314 16 6 0.0378 -4.7864 0.2459 17 8 -0.6268 -3.7728 0.1510 18 7 -0.5712 -5.9830 0.3643 19 6 -1.9646 -6.0694 0.2840 20 6 -2.7559 -5.0515 0.8006 21 6 -4.1317 -5.1381 0.7161 22 6 -4.7217 -6.2409 0.1263 23 7 -6.1966 -6.3328 0.0422 24 8 -6.7601 -7.3828 -0.5187 25 8 -6.9455 -5.3647 0.5282 26 6 -3.9368 -7.2584 -0.3846 27 6 -2.5604 -7.1757 -0.3078 28 1 -0.4850 0.8400 -0.0004 29 1 4.0316 -2.4460 0.0006 30 1 5.3606 -4.5035 0.1955 31 1 4.2475 -6.6865 0.4071 32 1 1.7946 -6.8287 0.4357 33 1 -0.0428 -6.7842 0.5053 34 1 -2.2958 -4.1916 1.2646 35 1 -4.7476 -4.3455 1.1148 36 1 -4.4007 -8.1186 -0.8442 37 1 -1.9480 -7.9709 -0.7066 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194121359.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:01 Heat of formation + Delta-G solvation = 37.734722 kcal Electronic energy + Delta-G solvation = -26343.032343 eV Core-core repulsion = 22249.742161 eV Total energy + Delta-G solvation = -4093.290182 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.27383 -41.70062 -40.49953 -39.16975 -38.35676 -36.02322 -35.60150 -34.69346 -32.69508 -32.48355 -31.16979 -30.78641 -27.68457 -27.06480 -25.02119 -24.43829 -23.44017 -22.80766 -21.67165 -20.25469 -19.93320 -19.75741 -19.13088 -18.59949 -18.04279 -17.12338 -16.66868 -16.56665 -16.25075 -16.21154 -15.99668 -15.88797 -15.52161 -15.31419 -14.77109 -14.74436 -14.39952 -14.19952 -14.17064 -13.84261 -13.05312 -12.85130 -12.64396 -12.61695 -12.53708 -12.36798 -12.32327 -12.10031 -11.93134 -11.80983 -11.33060 -10.97978 -10.75215 -10.44468 -9.88130 -9.63758 -9.17906 -8.72806 -5.75062 -1.87355 -0.13279 -0.07856 0.04878 0.21187 0.73513 1.30365 1.44098 1.45740 1.81494 1.87406 2.08505 2.29814 2.68807 3.22564 3.29644 3.36607 3.41056 3.61651 3.73730 3.94382 4.09355 4.11337 4.25392 4.35643 4.55470 4.58975 4.67170 4.72257 4.81108 4.92414 4.96405 5.03388 5.07887 5.21446 5.43660 5.50445 5.58270 5.59130 5.80094 5.83205 6.24131 6.37935 6.62318 7.19759 8.03354 8.51124 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.012331 B = 0.003357 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.226908 B = 8338.550209 C =10491.952492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C -0.009 4.009 3 Si 1.018 2.982 4 H -0.253 1.253 5 H -0.267 1.267 6 H -0.253 1.253 7 C -0.447 4.447 8 H 0.097 0.903 9 O -0.112 6.112 10 C 0.107 3.893 11 C -0.268 4.268 12 C -0.033 4.033 13 C -0.228 4.228 14 C -0.016 4.016 15 C -0.262 4.262 16 C 0.551 3.449 17 O -0.539 6.539 18 N -0.657 5.657 19 C 0.225 3.775 20 C -0.145 4.145 21 C -0.030 4.030 22 C -0.049 4.049 23 N -0.004 5.004 24 O -0.171 6.171 25 O -0.240 6.240 26 C -0.013 4.013 27 C -0.129 4.129 28 H 0.289 0.711 29 H 0.118 0.882 30 H 0.145 0.855 31 H 0.156 0.844 32 H 0.163 0.837 33 H 0.434 0.566 34 H 0.134 0.866 35 H 0.150 0.850 36 H 0.188 0.812 37 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.257 -16.021 0.625 16.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.219 4.219 3 Si 0.835 3.165 4 H -0.177 1.177 5 H -0.191 1.191 6 H -0.177 1.177 7 C -0.524 4.524 8 H 0.114 0.886 9 O -0.007 6.007 10 C 0.049 3.951 11 C -0.288 4.288 12 C -0.052 4.052 13 C -0.246 4.246 14 C -0.035 4.035 15 C -0.268 4.268 16 C 0.345 3.655 17 O -0.416 6.416 18 N -0.305 5.305 19 C 0.126 3.874 20 C -0.167 4.167 21 C -0.050 4.050 22 C -0.137 4.137 23 N 0.467 4.533 24 O -0.369 6.369 25 O -0.418 6.418 26 C -0.033 4.033 27 C -0.150 4.150 28 H 0.100 0.900 29 H 0.135 0.865 30 H 0.162 0.838 31 H 0.174 0.826 32 H 0.181 0.819 33 H 0.276 0.724 34 H 0.151 0.849 35 H 0.167 0.833 36 H 0.205 0.795 37 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 3.972 -14.887 0.609 15.420 hybrid contribution -0.200 1.244 0.114 1.265 sum 3.772 -13.643 0.723 14.173 Atomic orbital electron populations 1.69108 1.09858 1.30929 1.37948 1.28224 0.96042 1.02355 0.95308 0.84675 0.77913 0.73403 0.80488 1.17748 1.19087 1.17721 1.21401 0.93563 0.83678 1.53786 0.88555 1.80501 1.37555 1.12433 1.70175 1.19923 0.91137 0.86667 0.97398 1.20984 0.92471 1.00429 1.14914 1.21320 1.00240 0.91540 0.92062 1.21005 0.94190 0.98054 1.11386 1.21247 0.94307 0.95501 0.92418 1.18694 0.90660 0.92870 1.24544 1.18728 0.88735 0.82493 0.75561 1.90938 1.66496 1.35817 1.48328 1.43469 1.04034 1.11232 1.71752 1.18446 0.83940 0.94549 0.90505 1.21301 0.91868 1.01263 1.02240 1.20939 0.94929 0.95585 0.93579 1.20552 0.75440 1.02408 1.15337 1.50669 1.05542 1.00617 0.96472 1.96203 1.77795 1.18834 1.44101 1.96292 1.62982 1.29899 1.52668 1.21256 0.92868 0.96521 0.92606 1.21345 0.93377 0.99650 1.00609 0.89956 0.86460 0.83754 0.82591 0.81946 0.72417 0.84852 0.83275 0.79471 0.78092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.48 13.66 23.22 0.32 -49.17 16 2 C -0.01 -0.50 5.69 87.24 0.50 -0.01 16 3 Si 1.02 39.75 29.64 68.60 2.03 41.79 16 4 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 5 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 6 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 7 C -0.45 -24.86 9.48 70.01 0.66 -24.20 16 8 H 0.10 4.91 5.03 -2.91 -0.01 4.90 16 9 O -0.11 -6.45 7.37 74.65 0.55 -5.90 16 10 C 0.11 5.04 6.60 22.89 0.15 5.19 16 11 C -0.27 -10.77 9.12 22.36 0.20 -10.57 16 12 C -0.03 -0.98 10.03 22.30 0.22 -0.76 16 13 C -0.23 -5.54 10.03 22.26 0.22 -5.32 16 14 C -0.02 -0.42 9.53 22.52 0.21 -0.21 16 15 C -0.26 -10.00 5.89 -19.99 -0.12 -10.12 16 16 C 0.55 21.11 7.61 86.72 0.66 21.77 16 17 O -0.54 -27.24 12.62 16.93 0.21 -27.03 16 18 N -0.66 -16.05 5.28 -306.29 -1.62 -17.66 16 19 C 0.22 5.42 6.29 38.18 0.24 5.66 16 20 C -0.15 -4.45 8.69 22.40 0.19 -4.26 16 21 C -0.03 -0.86 9.57 22.25 0.21 -0.65 16 22 C -0.05 -1.27 6.89 36.40 0.25 -1.02 16 23 N 0.00 -0.11 4.98 -46.41 -0.23 -0.34 16 24 O -0.17 -5.10 19.15 3.51 0.07 -5.03 16 25 O -0.24 -8.50 19.15 3.52 0.07 -8.43 16 26 C -0.01 -0.22 9.57 22.25 0.21 -0.01 16 27 C -0.13 -1.96 9.97 22.39 0.22 -1.74 16 28 H 0.29 15.21 8.26 -92.71 -0.77 14.44 16 29 H 0.12 4.82 5.69 -2.91 -0.02 4.80 16 30 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 31 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 32 H 0.16 2.31 6.41 -2.91 -0.02 2.29 16 33 H 0.43 6.16 6.87 -92.70 -0.64 5.53 16 34 H 0.13 5.10 6.25 -2.91 -0.02 5.08 16 35 H 0.15 4.31 7.57 -2.91 -0.02 4.29 16 36 H 0.19 2.23 7.57 -2.91 -0.02 2.20 16 37 H 0.20 1.09 8.06 -2.91 -0.02 1.07 16 Total: -1.00 -80.21 335.92 5.99 -74.22 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.54 Total: 23.79 kcal Atomic # 6 Polarization: -30.28 SS G_CDS: 4.05 Total: -26.23 kcal Atomic # 7 Polarization: -65.64 SS G_CDS: -1.53 Total: -67.17 kcal Atomic # 8 Polarization: -47.29 SS G_CDS: 0.90 Total: -46.39 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.79 kcal Total: -80.21 5.99 -74.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194121359.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.953 kcal (2) G-P(sol) polarization free energy of solvation -80.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds