Wall clock time and date at job start Tue Mar 31 2020 14:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 120.00279 * 2 1 4 4 H 1.48503 * 109.47046 * 270.00117 * 3 2 1 5 5 H 1.48501 * 109.46838 * 29.99495 * 3 2 1 6 6 H 1.48496 * 109.47426 * 149.99726 * 3 2 1 7 7 C 1.38805 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00104 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99451 * 0.02562 * 7 2 1 10 10 C 1.81008 * 99.99652 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.46702 * 180.02562 * 10 9 7 12 12 O 1.20824 * 120.00152 * 359.97438 * 11 10 9 13 13 O 1.34263 * 119.99469 * 180.02562 * 11 10 9 14 14 C 1.35929 * 117.00058 * 185.77130 * 13 11 10 15 15 C 1.38731 * 120.05631 * 248.99552 * 14 13 11 16 16 C 1.38145 * 119.94174 * 180.02562 * 15 14 13 17 17 C 1.38262 * 120.05816 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.94683 * 179.97438 * 17 16 15 19 19 C 1.50700 * 109.47293 * 90.00153 * 18 17 16 20 20 C 1.38233 * 120.00367 * 269.73419 * 19 18 17 21 21 C 1.38225 * 120.00132 * 179.76602 * 20 19 18 22 22 C 1.38238 * 120.00269 * 0.47559 * 21 20 19 23 23 C 1.38234 * 119.99474 * 359.79606 * 22 21 20 24 24 C 1.38235 * 120.00301 * 359.95741 * 23 22 21 25 25 C 1.38269 * 120.11151 * 0.25821 * 17 16 15 26 26 C 1.38142 * 120.05381 * 359.44319 * 25 17 16 27 27 H 0.97003 * 120.00188 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46635 * 60.00364 * 10 9 7 29 29 H 1.08992 * 109.47107 * 300.00090 * 10 9 7 30 30 H 1.07995 * 120.02718 * 0.02562 * 15 14 13 31 31 H 1.08002 * 119.96912 * 180.02562 * 16 15 14 32 32 H 1.09004 * 109.47564 * 210.00577 * 18 17 16 33 33 H 1.08997 * 109.47037 * 330.00438 * 18 17 16 34 34 H 1.08007 * 119.99604 * 359.97438 * 20 19 18 35 35 H 1.08000 * 120.00379 * 180.24877 * 21 20 19 36 36 H 1.07993 * 120.00418 * 179.76745 * 22 21 20 37 37 H 1.08001 * 120.00030 * 179.97438 * 23 22 21 38 38 H 1.08004 * 120.00258 * 180.02562 * 24 23 22 39 39 H 1.08004 * 119.97489 * 179.70504 * 25 17 16 40 40 H 1.08004 * 120.02858 * 180.25437 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1292 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9872 -5.3027 -0.0001 12 8 0.7955 -5.5015 0.0000 13 8 2.8408 -6.3391 0.0003 14 6 2.3030 -7.5815 -0.1221 15 6 2.3341 -8.4609 0.9505 16 6 1.7873 -9.7231 0.8233 17 6 1.2099 -10.1105 -0.3718 18 6 0.6147 -11.4883 -0.5079 19 6 -0.8380 -11.4496 -0.1087 20 6 -1.2001 -11.6808 1.2052 21 6 -2.5321 -11.6406 1.5723 22 6 -3.5030 -11.3789 0.6236 23 6 -3.1413 -11.1533 -0.6914 24 6 -1.8087 -11.1885 -1.0575 25 6 1.1828 -9.2380 -1.4441 26 6 1.7227 -7.9725 -1.3201 27 1 -0.4850 0.8401 -0.0004 28 1 3.1243 -3.7313 0.8906 29 1 3.1244 -3.7314 -0.8894 30 1 2.7854 -8.1589 1.8840 31 1 1.8110 -10.4079 1.6581 32 1 0.6984 -11.8196 -1.5430 33 1 1.1512 -12.1814 0.1400 34 1 -0.4419 -11.8895 1.9456 35 1 -2.8148 -11.8172 2.5995 36 1 -4.5440 -11.3512 0.9096 37 1 -3.8997 -10.9493 -1.4327 38 1 -1.5261 -11.0118 -2.0848 39 1 0.7354 -9.5446 -2.3780 40 1 1.6977 -7.2899 -2.1567 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194645944.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:23 Heat of formation + Delta-G solvation = -33.703378 kcal Electronic energy + Delta-G solvation = -23294.991687 eV Core-core repulsion = 19744.896931 eV Total energy + Delta-G solvation = -3550.094756 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.07750 -39.72715 -38.54468 -36.56776 -33.70150 -32.51430 -31.25358 -30.97418 -30.52434 -29.41778 -26.37676 -25.56986 -23.29529 -22.88945 -22.50508 -21.41908 -20.53152 -18.15022 -17.81817 -17.04536 -16.62001 -16.36807 -15.74013 -15.43327 -15.32875 -14.87242 -14.64830 -14.62932 -14.10384 -13.74441 -13.69237 -13.49907 -13.29193 -12.94285 -12.78149 -12.69316 -12.35441 -12.22871 -11.73011 -11.55298 -11.29915 -11.17431 -11.13156 -11.09112 -10.85783 -10.66755 -10.16991 -9.94425 -9.14226 -9.12039 -9.06869 -8.95408 -8.55427 -8.39644 -6.64461 -6.30000 -4.03372 0.93341 1.20777 1.21927 1.26852 2.51734 2.65690 3.19017 3.21917 3.26878 3.42288 3.58913 3.73740 4.12048 4.51130 4.63562 4.69141 4.75471 4.77812 4.82411 4.93230 5.00275 5.01714 5.05973 5.21966 5.31335 5.36872 5.40074 5.46952 5.52434 5.70485 5.75257 5.83544 5.85469 5.88519 6.01442 6.13325 6.26100 6.30034 6.30672 6.33409 6.47627 6.55968 6.80572 6.93851 7.52804 8.14902 8.27612 9.15429 10.77478 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.018821 B = 0.002268 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.310428 B =12342.768991 C =13236.766712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.922 3.078 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.537 4.537 8 H 0.077 0.923 9 S -0.056 6.056 10 C -0.127 4.127 11 C 0.475 3.525 12 O -0.467 6.467 13 O -0.301 6.301 14 C 0.092 3.908 15 C -0.117 4.117 16 C -0.100 4.100 17 C -0.083 4.083 18 C -0.039 4.039 19 C -0.077 4.077 20 C -0.115 4.115 21 C -0.118 4.118 22 C -0.124 4.124 23 C -0.117 4.117 24 C -0.114 4.114 25 C -0.097 4.097 26 C -0.121 4.121 27 H 0.270 0.730 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.779 -25.622 -0.333 25.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.748 3.252 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.685 4.685 8 H 0.095 0.905 9 S 0.170 5.830 10 C -0.274 4.274 11 C 0.317 3.683 12 O -0.349 6.349 13 O -0.217 6.217 14 C 0.051 3.949 15 C -0.136 4.136 16 C -0.118 4.118 17 C -0.083 4.083 18 C -0.077 4.077 19 C -0.077 4.077 20 C -0.133 4.133 21 C -0.136 4.136 22 C -0.142 4.142 23 C -0.135 4.135 24 C -0.132 4.132 25 C -0.115 4.115 26 C -0.139 4.139 27 H 0.080 0.920 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.149 0.851 31 H 0.146 0.854 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.145 0.855 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.898 -25.776 -0.311 25.794 hybrid contribution 1.782 1.406 0.012 2.270 sum 0.885 -24.371 -0.300 24.389 Atomic orbital electron populations 1.70006 1.06004 1.27702 1.46474 1.25011 0.95074 0.99144 0.94284 0.86109 0.79410 0.81213 0.78445 1.20162 1.20685 1.19553 1.22838 0.95046 0.91059 1.59544 0.90502 1.85470 1.04047 0.96555 1.96907 1.23326 1.07229 0.90140 1.06751 1.23762 0.85307 0.86688 0.72582 1.90709 1.16542 1.84995 1.42680 1.84657 1.40127 1.13078 1.83880 1.18601 0.98461 0.84011 0.93877 1.21088 1.00551 0.94271 0.97646 1.20815 0.98147 0.95677 0.97181 1.19721 0.98703 0.95855 0.94036 1.19575 0.91511 0.93654 1.02911 1.19742 0.94664 0.99457 0.93827 1.21021 0.96262 1.00494 0.95489 1.21140 0.93085 0.99987 0.99438 1.21165 0.99488 1.00133 0.93446 1.21158 0.96193 0.99749 0.96438 1.21044 0.92802 0.99960 0.99349 1.20830 0.99147 0.92821 0.98750 1.21340 0.98115 0.97222 0.97242 0.92020 0.87627 0.87627 0.85058 0.85430 0.89857 0.89868 0.86174 0.86121 0.86184 0.86057 0.86123 0.85509 0.85357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.69 13.22 55.49 0.73 -24.95 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.06 29.55 -169.99 -5.02 16.04 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.54 -14.97 9.50 30.94 0.29 -14.68 16 8 H 0.08 2.02 7.80 -52.49 -0.41 1.61 16 9 S -0.06 -1.49 20.58 -107.50 -2.21 -3.70 16 10 C -0.13 -2.58 6.27 36.01 0.23 -2.35 16 11 C 0.47 9.35 7.75 36.01 0.28 9.63 16 12 O -0.47 -10.56 15.28 -18.75 -0.29 -10.85 16 13 O -0.30 -5.13 10.04 -23.63 -0.24 -5.37 16 14 C 0.09 1.43 5.27 -39.22 -0.21 1.22 16 15 C -0.12 -1.54 9.99 -39.43 -0.39 -1.93 16 16 C -0.10 -1.09 9.69 -39.61 -0.38 -1.47 16 17 C -0.08 -0.87 5.12 -104.60 -0.54 -1.41 16 18 C -0.04 -0.31 5.47 -29.04 -0.16 -0.47 16 19 C -0.08 -0.72 5.12 -104.62 -0.54 -1.26 16 20 C -0.11 -1.05 9.70 -39.59 -0.38 -1.44 16 21 C -0.12 -1.08 10.05 -39.59 -0.40 -1.47 16 22 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 23 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 24 C -0.11 -1.08 9.70 -39.58 -0.38 -1.46 16 25 C -0.10 -1.13 9.69 -39.61 -0.38 -1.51 16 26 C -0.12 -1.71 9.33 -39.43 -0.37 -2.08 16 27 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.11 1.98 8.14 -51.92 -0.42 1.55 16 29 H 0.11 1.96 8.14 -51.92 -0.42 1.54 16 30 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 31 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.08 0.55 8.03 -51.93 -0.42 0.13 16 33 H 0.08 0.53 8.03 -51.93 -0.42 0.11 16 34 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 35 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 39 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 40 H 0.13 1.79 8.06 -52.48 -0.42 1.37 16 LS Contribution 369.19 15.07 5.56 5.56 Total: -1.00 -33.37 369.19 -10.71 -44.08 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -5.03 Total: 0.93 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -4.22 Total: -21.74 kcal Atomic # 7 Polarization: -25.69 SS G_CDS: 0.73 Total: -24.95 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.52 Total: -16.22 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.37 -10.71 -44.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194645944.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.379 kcal (2) G-P(sol) polarization free energy of solvation -33.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds