Wall clock time and date at job start Tue Mar 31 2020 14:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31496 * 1 3 3 Si 1.86794 * 120.00454 * 2 1 4 4 H 1.48506 * 109.46952 * 270.00215 * 3 2 1 5 5 H 1.48502 * 109.46969 * 30.00030 * 3 2 1 6 6 H 1.48497 * 109.47314 * 149.99992 * 3 2 1 7 7 C 1.38751 * 119.99245 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99181 * 179.97438 * 7 2 1 9 9 O 1.34769 * 120.00535 * 359.97438 * 7 2 1 10 10 C 1.35565 * 117.00217 * 185.05968 * 9 7 2 11 11 C 1.39160 * 119.92143 * 354.97731 * 10 9 7 12 12 C 1.37637 * 120.07625 * 180.02562 * 11 10 9 13 13 C 1.39804 * 119.92273 * 359.97438 * 12 11 10 14 14 C 1.47680 * 120.07214 * 179.73103 * 13 12 11 15 15 O 1.21797 * 120.00461 * 359.97438 * 14 13 12 16 16 C 1.41822 * 119.99521 * 180.02562 * 14 13 12 17 17 C 1.35233 * 119.99853 * 173.67235 * 16 14 13 18 18 C 1.46890 * 120.00078 * 345.66784 * 17 16 14 19 19 C 1.40028 * 120.11372 * 137.22134 * 18 17 16 20 20 C 1.37665 * 119.92382 * 180.02562 * 19 18 17 21 21 C 1.38983 * 120.14086 * 0.02562 * 20 19 18 22 22 O 1.35778 * 119.88642 * 180.02562 * 21 20 19 23 23 C 1.39223 * 120.22587 * 359.97438 * 21 20 19 24 24 F 1.35102 * 119.96206 * 180.02562 * 23 21 20 25 25 C 1.37821 * 120.07603 * 359.71989 * 23 21 20 26 26 C 1.39797 * 119.84692 * 0.02562 * 13 12 11 27 27 C 1.37641 * 119.92229 * 0.02562 * 26 13 12 28 28 H 0.96999 * 119.99597 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.96123 * 359.97271 * 11 10 9 30 30 H 1.08003 * 120.04224 * 179.97438 * 12 11 10 31 31 H 1.07996 * 120.00103 * 353.66323 * 16 14 13 32 32 H 1.07994 * 119.99885 * 165.67154 * 17 16 14 33 33 H 1.08001 * 120.03909 * 359.97438 * 19 18 17 34 34 H 1.07993 * 119.92830 * 180.02562 * 20 19 18 35 35 H 0.96700 * 114.00500 * 89.99563 * 22 21 20 36 36 H 1.08000 * 120.07521 * 180.27625 * 25 23 21 37 37 H 1.08003 * 120.03729 * 179.97438 * 26 13 12 38 38 H 1.07997 * 119.96110 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4965 2.0463 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4400 0.7000 7 6 2.0086 -1.2017 -0.0005 8 1 3.0886 -1.2017 -0.0010 9 8 1.3347 -2.3688 -0.0005 10 6 2.0689 -3.5035 0.1055 11 6 3.4587 -3.4338 0.1024 12 6 4.2073 -4.5838 0.2093 13 6 3.5698 -5.8230 0.3216 14 6 4.3697 -7.0596 0.4305 15 8 5.5863 -7.0007 0.4221 16 6 3.7213 -8.3158 0.5438 17 6 4.4472 -9.4564 0.5146 18 6 5.8426 -9.4275 0.0568 19 6 6.8236 -10.1501 0.7469 20 6 8.1303 -10.1198 0.3146 21 6 8.4779 -9.3731 -0.8049 22 8 9.7681 -9.3473 -1.2270 23 6 7.5074 -8.6523 -1.4956 24 9 7.8512 -7.9287 -2.5834 25 6 6.1954 -8.6813 -1.0745 26 6 2.1734 -5.8893 0.3243 27 6 1.4310 -4.7353 0.2160 28 1 -0.4849 0.8401 0.0004 29 1 3.9506 -2.4762 0.0152 30 1 5.2859 -4.5291 0.2065 31 1 2.6479 -8.3615 0.6534 32 1 4.0009 -10.3886 0.8280 33 1 6.5556 -10.7300 1.6177 34 1 8.8868 -10.6775 0.8465 35 1 9.9874 -10.0405 -1.8646 36 1 5.4419 -8.1257 -1.6130 37 1 1.6777 -6.8450 0.4105 38 1 0.3522 -4.7858 0.2176 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255516128.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:28 Heat of formation + Delta-G solvation = -67.405060 kcal Electronic energy + Delta-G solvation = -25847.279336 eV Core-core repulsion = 21729.509990 eV Total energy + Delta-G solvation = -4117.769346 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.87633 -40.24800 -39.35483 -38.68902 -37.04799 -36.17850 -33.51953 -32.55349 -30.85610 -30.47947 -30.00926 -28.58355 -25.73391 -24.70698 -23.12290 -22.52422 -22.02651 -20.90668 -19.04040 -18.80544 -18.10149 -17.68210 -16.92833 -16.62295 -16.19254 -16.02087 -15.41292 -15.02265 -14.67161 -14.47242 -14.35447 -14.22858 -13.91392 -13.80479 -13.61109 -13.36519 -13.14512 -12.80038 -12.71891 -12.55511 -12.27072 -11.86427 -11.68293 -11.59344 -11.39244 -10.94137 -10.79359 -10.74127 -10.55972 -9.95967 -9.56924 -9.44545 -9.04052 -8.81818 -8.38718 -8.19519 -7.42967 -6.68662 -4.23580 0.25127 1.03837 1.28986 1.95020 2.14727 3.01792 3.04107 3.09199 3.33797 3.48158 3.78547 3.80686 4.19161 4.44945 4.51314 4.53093 4.63833 4.89707 4.91752 5.02050 5.09085 5.26741 5.42835 5.54155 5.58683 5.61903 5.75583 5.86476 5.93322 5.96531 6.02569 6.15958 6.22729 6.39291 6.47670 6.55069 6.73402 6.88697 6.97546 7.21397 7.23607 7.35380 7.61378 7.77362 8.04473 8.76237 9.42016 10.47705 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.019955 B = 0.002470 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.837553 B =11331.147683 C =12330.835775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.043 3.957 3 Si 0.945 3.055 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.393 4.393 8 H 0.098 0.902 9 O -0.159 6.159 10 C 0.175 3.825 11 C -0.249 4.249 12 C -0.008 4.008 13 C -0.272 4.272 14 C 0.416 3.584 15 O -0.475 6.475 16 C -0.209 4.209 17 C -0.040 4.040 18 C -0.039 4.039 19 C -0.099 4.099 20 C -0.127 4.127 21 C 0.076 3.924 22 O -0.489 6.489 23 C 0.069 3.931 24 F -0.135 7.135 25 C -0.073 4.073 26 C -0.030 4.030 27 C -0.205 4.205 28 H 0.275 0.725 29 H 0.132 0.868 30 H 0.118 0.882 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.389 0.611 36 H 0.134 0.866 37 H 0.120 0.880 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.892 -20.622 -0.122 22.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.164 4.164 3 Si 0.769 3.231 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.469 4.469 8 H 0.116 0.884 9 O -0.059 6.059 10 C 0.117 3.883 11 C -0.269 4.269 12 C -0.026 4.026 13 C -0.274 4.274 14 C 0.303 3.697 15 O -0.357 6.357 16 C -0.227 4.227 17 C -0.059 4.059 18 C -0.040 4.040 19 C -0.117 4.117 20 C -0.145 4.145 21 C 0.030 3.970 22 O -0.299 6.299 23 C 0.049 3.951 24 F -0.113 7.113 25 C -0.092 4.092 26 C -0.048 4.048 27 C -0.224 4.224 28 H 0.085 0.915 29 H 0.149 0.851 30 H 0.136 0.864 31 H 0.157 0.843 32 H 0.156 0.844 33 H 0.151 0.849 34 H 0.154 0.846 35 H 0.244 0.756 36 H 0.152 0.848 37 H 0.137 0.863 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.092 -19.812 0.181 22.235 hybrid contribution 0.280 0.744 -0.456 0.917 sum 10.372 -19.068 -0.275 21.709 Atomic orbital electron populations 1.70007 1.06178 1.28384 1.43663 1.25419 0.95915 0.99205 0.95860 0.85635 0.79061 0.79379 0.79024 1.19559 1.19986 1.18861 1.21522 0.92204 0.80494 1.52655 0.88418 1.83892 1.35086 1.11875 1.75040 1.19643 0.90341 0.87855 0.90413 1.21126 0.93586 0.99167 1.12987 1.20917 0.99133 0.91063 0.91525 1.19777 0.93805 0.94161 1.19623 1.19179 0.88431 0.89041 0.73079 1.90691 1.15746 1.89522 1.39768 1.22900 1.01471 0.93980 1.04360 1.22471 0.91637 0.98571 0.93186 1.18751 0.93806 0.96646 0.94748 1.21121 0.91895 0.99104 0.99560 1.21102 0.96836 0.99764 0.96811 1.18557 0.83350 0.99239 0.95809 1.84846 1.23408 1.57144 1.64453 1.17870 0.93144 0.97141 0.86921 1.91497 1.92802 1.75532 1.51487 1.21104 0.94514 0.96794 0.96792 1.20835 0.92415 0.96965 0.94595 1.20152 0.99790 0.90096 1.12411 0.91511 0.85072 0.86425 0.84282 0.84373 0.84882 0.84552 0.75551 0.84842 0.86259 0.85966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.70 13.67 55.48 0.76 -22.94 16 2 C 0.04 1.12 5.49 -17.51 -0.10 1.02 16 3 Si 0.95 19.65 29.55 -169.99 -5.02 14.63 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.39 -10.50 9.48 30.92 0.29 -10.21 16 8 H 0.10 2.42 5.18 -52.48 -0.27 2.15 16 9 O -0.16 -4.30 9.74 0.79 0.01 -4.29 16 10 C 0.17 4.04 6.66 -38.90 -0.26 3.78 16 11 C -0.25 -5.36 9.15 -39.46 -0.36 -5.72 16 12 C -0.01 -0.15 9.58 -39.22 -0.38 -0.53 16 13 C -0.27 -4.80 5.88 -104.87 -0.62 -5.42 16 14 C 0.42 6.54 5.96 -34.36 -0.20 6.33 16 15 O -0.47 -8.48 12.29 5.10 0.06 -8.42 16 16 C -0.21 -2.40 9.18 -39.28 -0.36 -2.76 16 17 C -0.04 -0.39 9.79 -37.15 -0.36 -0.75 16 18 C -0.04 -0.45 4.44 -105.05 -0.47 -0.92 16 19 C -0.10 -0.95 9.79 -39.12 -0.38 -1.34 16 20 C -0.13 -1.25 9.96 -39.51 -0.39 -1.65 16 21 C 0.08 0.91 6.72 -38.94 -0.26 0.65 16 22 O -0.49 -5.24 13.35 -19.05 -0.25 -5.50 16 23 C 0.07 0.96 7.30 -39.37 -0.29 0.67 16 24 F -0.13 -2.04 17.10 2.25 0.04 -2.01 16 25 C -0.07 -0.99 6.72 -39.06 -0.26 -1.25 16 26 C -0.03 -0.49 9.42 -39.22 -0.37 -0.86 16 27 C -0.21 -4.04 9.97 -39.46 -0.39 -4.43 16 28 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.13 2.81 5.61 -52.49 -0.29 2.52 16 30 H 0.12 2.20 7.64 -52.48 -0.40 1.80 16 31 H 0.14 1.25 6.26 -52.49 -0.33 0.92 16 32 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 33 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 34 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 35 H 0.39 2.06 9.06 45.56 0.41 2.47 16 36 H 0.13 1.87 7.14 -52.49 -0.37 1.49 16 37 H 0.12 1.48 6.21 -52.48 -0.33 1.15 16 38 H 0.12 2.26 8.06 -52.49 -0.42 1.83 16 LS Contribution 340.18 15.07 5.13 5.13 Total: -1.00 -32.65 340.18 -6.86 -39.50 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -2.41 Total: 7.27 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: -5.16 Total: -23.38 kcal Atomic # 7 Polarization: -23.70 SS G_CDS: 0.76 Total: -22.94 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.18 Total: -18.20 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.65 -6.86 -39.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255516128.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.901 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds