Wall clock time and date at job start Tue Mar 31 2020 14:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31496 * 1 3 3 Si 1.86794 * 120.00454 * 2 1 4 4 H 1.48506 * 109.46952 * 270.00215 * 3 2 1 5 5 H 1.48502 * 109.46969 * 30.00030 * 3 2 1 6 6 H 1.48497 * 109.47314 * 149.99992 * 3 2 1 7 7 C 1.38751 * 119.99245 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99181 * 179.97438 * 7 2 1 9 9 O 1.34769 * 120.00535 * 359.97438 * 7 2 1 10 10 C 1.35565 * 117.00217 * 185.05968 * 9 7 2 11 11 C 1.39160 * 119.92143 * 354.97731 * 10 9 7 12 12 C 1.37637 * 120.07625 * 180.02562 * 11 10 9 13 13 C 1.39804 * 119.92273 * 359.97438 * 12 11 10 14 14 C 1.47680 * 120.07214 * 179.73103 * 13 12 11 15 15 O 1.21797 * 120.00461 * 359.97438 * 14 13 12 16 16 C 1.41822 * 119.99521 * 180.02562 * 14 13 12 17 17 C 1.35233 * 119.99853 * 173.67235 * 16 14 13 18 18 C 1.46890 * 120.00078 * 345.66784 * 17 16 14 19 19 C 1.40028 * 120.11372 * 137.22134 * 18 17 16 20 20 C 1.37665 * 119.92382 * 180.02562 * 19 18 17 21 21 C 1.38983 * 120.14086 * 0.02562 * 20 19 18 22 22 O 1.35778 * 119.88642 * 180.02562 * 21 20 19 23 23 C 1.39223 * 120.22587 * 359.97438 * 21 20 19 24 24 F 1.35102 * 119.96206 * 180.02562 * 23 21 20 25 25 C 1.37821 * 120.07603 * 359.71989 * 23 21 20 26 26 C 1.39797 * 119.84692 * 0.02562 * 13 12 11 27 27 C 1.37641 * 119.92229 * 0.02562 * 26 13 12 28 28 H 0.96999 * 119.99597 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.96123 * 359.97271 * 11 10 9 30 30 H 1.08003 * 120.04224 * 179.97438 * 12 11 10 31 31 H 1.07996 * 120.00103 * 353.66323 * 16 14 13 32 32 H 1.07994 * 119.99885 * 165.67154 * 17 16 14 33 33 H 1.08001 * 120.03909 * 359.97438 * 19 18 17 34 34 H 1.07993 * 119.92830 * 180.02562 * 20 19 18 35 35 H 0.96700 * 114.00500 * 89.99563 * 22 21 20 36 36 H 1.08000 * 120.07521 * 180.27625 * 25 23 21 37 37 H 1.08003 * 120.03729 * 179.97438 * 26 13 12 38 38 H 1.07997 * 119.96110 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4965 2.0463 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4400 0.7000 7 6 2.0086 -1.2017 -0.0005 8 1 3.0886 -1.2017 -0.0010 9 8 1.3347 -2.3688 -0.0005 10 6 2.0689 -3.5035 0.1055 11 6 3.4587 -3.4338 0.1024 12 6 4.2073 -4.5838 0.2093 13 6 3.5698 -5.8230 0.3216 14 6 4.3697 -7.0596 0.4305 15 8 5.5863 -7.0007 0.4221 16 6 3.7213 -8.3158 0.5438 17 6 4.4472 -9.4564 0.5146 18 6 5.8426 -9.4275 0.0568 19 6 6.8236 -10.1501 0.7469 20 6 8.1303 -10.1198 0.3146 21 6 8.4779 -9.3731 -0.8049 22 8 9.7681 -9.3473 -1.2270 23 6 7.5074 -8.6523 -1.4956 24 9 7.8512 -7.9287 -2.5834 25 6 6.1954 -8.6813 -1.0745 26 6 2.1734 -5.8893 0.3243 27 6 1.4310 -4.7353 0.2160 28 1 -0.4849 0.8401 0.0004 29 1 3.9506 -2.4762 0.0152 30 1 5.2859 -4.5291 0.2065 31 1 2.6479 -8.3615 0.6534 32 1 4.0009 -10.3886 0.8280 33 1 6.5556 -10.7300 1.6177 34 1 8.8868 -10.6775 0.8465 35 1 9.9874 -10.0405 -1.8646 36 1 5.4419 -8.1257 -1.6130 37 1 1.6777 -6.8450 0.4105 38 1 0.3522 -4.7858 0.2176 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255516128.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:27 Heat of formation + Delta-G solvation = -88.532290 kcal Electronic energy + Delta-G solvation = -25848.195482 eV Core-core repulsion = 21729.509990 eV Total energy + Delta-G solvation = -4118.685492 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.94582 -41.42917 -40.70440 -39.95273 -38.16488 -37.58386 -34.47529 -34.39636 -32.01443 -31.74010 -31.42262 -29.67402 -27.57461 -25.86738 -24.16258 -23.69501 -23.43554 -22.18473 -20.38959 -19.71828 -19.58167 -19.10635 -18.23149 -17.61998 -17.39470 -17.02695 -16.61943 -16.35398 -16.19001 -15.78890 -15.73881 -15.57587 -15.39753 -14.89593 -14.72630 -14.52859 -14.47092 -14.24853 -13.95477 -13.62036 -13.41211 -13.27415 -13.06014 -12.99902 -12.62991 -12.52302 -12.28924 -12.16249 -11.62100 -11.30668 -10.89542 -10.82139 -10.65236 -9.95200 -9.77294 -9.15108 -9.07948 -8.57790 -6.24623 -0.70337 0.03567 0.26103 0.53419 0.79183 1.32991 1.40591 1.49772 2.11279 2.14649 2.55245 2.83792 2.98429 3.14235 3.31649 3.33420 3.45229 3.65211 3.79469 3.97501 4.04267 4.12844 4.25317 4.39579 4.43056 4.60464 4.61561 4.77689 4.85614 4.93082 4.98376 5.03349 5.08587 5.15042 5.16142 5.36191 5.41607 5.46149 5.56903 5.67496 5.76779 5.91519 6.03015 6.70111 6.79371 6.86527 7.60587 8.63850 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.019955 B = 0.002470 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.837553 B =11331.147683 C =12330.835775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.013 4.013 3 Si 1.017 2.983 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.256 1.256 7 C -0.421 4.421 8 H 0.102 0.898 9 O -0.211 6.211 10 C 0.144 3.856 11 C -0.259 4.259 12 C -0.022 4.022 13 C -0.259 4.259 14 C 0.421 3.579 15 O -0.499 6.499 16 C -0.238 4.238 17 C 0.002 3.998 18 C -0.061 4.061 19 C -0.084 4.084 20 C -0.124 4.124 21 C 0.073 3.927 22 O -0.503 6.503 23 C 0.030 3.970 24 F -0.154 7.154 25 C -0.089 4.089 26 C -0.008 4.008 27 C -0.211 4.211 28 H 0.277 0.723 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.173 0.827 32 H 0.191 0.809 33 H 0.174 0.826 34 H 0.167 0.833 35 H 0.411 0.589 36 H 0.116 0.884 37 H 0.177 0.823 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.035 -25.123 1.446 27.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.213 4.213 3 Si 0.836 3.164 4 H -0.187 1.187 5 H -0.191 1.191 6 H -0.180 1.180 7 C -0.497 4.497 8 H 0.119 0.881 9 O -0.115 6.115 10 C 0.091 3.909 11 C -0.278 4.278 12 C -0.040 4.040 13 C -0.260 4.260 14 C 0.308 3.692 15 O -0.382 6.382 16 C -0.256 4.256 17 C -0.016 4.016 18 C -0.061 4.061 19 C -0.102 4.102 20 C -0.142 4.142 21 C 0.027 3.973 22 O -0.316 6.316 23 C 0.011 3.989 24 F -0.133 7.133 25 C -0.108 4.108 26 C -0.026 4.026 27 C -0.230 4.230 28 H 0.086 0.914 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.190 0.810 32 H 0.208 0.792 33 H 0.191 0.809 34 H 0.184 0.816 35 H 0.270 0.730 36 H 0.134 0.866 37 H 0.194 0.806 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 11.274 -24.381 1.737 26.917 hybrid contribution 0.271 1.535 -0.935 1.818 sum 11.545 -22.845 0.802 25.609 Atomic orbital electron populations 1.70123 1.07927 1.29304 1.47051 1.26582 0.96846 1.02624 0.95230 0.84612 0.77843 0.74574 0.79397 1.18707 1.19085 1.17981 1.21876 0.92629 0.81282 1.53883 0.88106 1.83878 1.36083 1.12701 1.78886 1.20227 0.91101 0.88334 0.91213 1.21148 0.93466 0.99625 1.13560 1.21065 0.99337 0.91534 0.92101 1.20382 0.94974 0.94640 1.16032 1.19510 0.87921 0.89923 0.71856 1.90711 1.16933 1.89903 1.40689 1.22829 1.03067 0.91914 1.07766 1.23003 0.89951 0.99919 0.88749 1.19125 0.95694 0.96839 0.94482 1.21603 0.91151 0.97697 0.99730 1.21494 0.97975 0.99001 0.95753 1.18790 0.83259 0.98994 0.96256 1.84777 1.22844 1.58653 1.65302 1.18314 0.94329 0.98751 0.87555 1.91434 1.93012 1.76298 1.52579 1.21122 0.93993 0.97575 0.98075 1.21357 0.91667 0.98132 0.91449 1.20536 1.00813 0.89790 1.11879 0.91354 0.86210 0.86191 0.81004 0.79164 0.80860 0.81562 0.72971 0.86566 0.80561 0.84883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.84 13.67 21.63 0.30 -53.55 16 2 C -0.01 -0.73 5.49 84.87 0.47 -0.26 16 3 Si 1.02 42.16 29.55 68.60 2.03 44.19 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 5 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 6 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 7 C -0.42 -24.10 9.48 67.94 0.64 -23.45 16 8 H 0.10 5.40 5.18 -2.91 -0.02 5.38 16 9 O -0.21 -12.27 9.74 -20.09 -0.20 -12.47 16 10 C 0.14 6.98 6.66 22.71 0.15 7.14 16 11 C -0.26 -11.70 9.15 22.35 0.20 -11.49 16 12 C -0.02 -0.87 9.58 22.51 0.22 -0.65 16 13 C -0.26 -8.65 5.88 -20.03 -0.12 -8.77 16 14 C 0.42 11.99 5.96 25.65 0.15 12.15 16 15 O -0.50 -16.99 12.29 -4.66 -0.06 -17.05 16 16 C -0.24 -4.20 9.18 22.46 0.21 -3.99 16 17 C 0.00 0.02 9.79 23.84 0.23 0.25 16 18 C -0.06 -1.15 4.44 -20.14 -0.09 -1.24 16 19 C -0.08 -1.19 9.79 22.57 0.22 -0.97 16 20 C -0.12 -1.96 9.96 22.31 0.22 -1.74 16 21 C 0.07 1.61 6.72 22.69 0.15 1.76 16 22 O -0.50 -10.03 13.35 -91.07 -1.22 -11.24 16 23 C 0.03 0.83 7.30 22.41 0.16 0.99 16 24 F -0.15 -4.88 17.10 44.97 0.77 -4.11 16 25 C -0.09 -2.27 6.72 22.61 0.15 -2.12 16 26 C -0.01 -0.25 9.42 22.51 0.21 -0.04 16 27 C -0.21 -8.22 9.97 22.35 0.22 -8.00 16 28 H 0.28 14.98 8.31 -92.71 -0.77 14.21 16 29 H 0.12 5.56 5.61 -2.91 -0.02 5.54 16 30 H 0.12 4.61 7.64 -2.91 -0.02 4.59 16 31 H 0.17 1.87 6.26 -2.91 -0.02 1.85 16 32 H 0.19 0.60 8.06 -2.91 -0.02 0.58 16 33 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 34 H 0.17 1.61 8.06 -2.91 -0.02 1.58 16 35 H 0.41 3.70 9.06 -74.06 -0.67 3.02 16 36 H 0.12 3.25 7.14 -2.91 -0.02 3.23 16 37 H 0.18 3.31 6.21 -2.91 -0.02 3.29 16 38 H 0.13 4.85 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -79.85 340.18 5.51 -74.34 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.47 Total: 20.32 kcal Atomic # 6 Polarization: -43.85 SS G_CDS: 3.41 Total: -40.44 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.30 Total: -53.55 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -1.47 Total: -40.76 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.77 Total: -4.11 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -79.85 5.51 -74.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255516128.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.189 kcal (2) G-P(sol) polarization free energy of solvation -79.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds