Wall clock time and date at job start Tue Mar 31 2020 14:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99743 * 2 1 4 4 H 1.48496 * 109.47220 * 269.99825 * 3 2 1 5 5 H 1.48493 * 109.47122 * 30.00101 * 3 2 1 6 6 H 1.48503 * 109.46921 * 149.99887 * 3 2 1 7 7 C 1.37878 * 120.00493 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99548 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00213 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47149 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47195 * 179.97438 * 10 9 7 12 12 S 1.65606 * 120.00212 * 164.99805 * 11 10 9 13 13 O 1.42096 * 104.27590 * 308.93441 * 12 11 10 14 14 O 1.42091 * 104.27893 * 181.06974 * 12 11 10 15 15 C 1.81410 * 104.44573 * 65.00050 * 12 11 10 16 16 C 1.53000 * 109.46769 * 180.02562 * 15 12 11 17 17 C 1.50696 * 109.47110 * 179.97438 * 16 15 12 18 18 C 1.38238 * 119.99764 * 89.99849 * 17 16 15 19 19 C 1.38234 * 119.99693 * 179.97438 * 18 17 16 20 20 C 1.38234 * 120.00240 * 0.02562 * 19 18 17 21 21 N 1.48026 * 119.99930 * 179.97438 * 20 19 18 22 22 O 1.21793 * 119.99867 * 0.02562 * 21 20 19 23 23 O 1.21799 * 119.99956 * 179.97438 * 21 20 19 24 24 C 1.38233 * 120.00037 * 0.26327 * 20 19 18 25 25 C 1.38234 * 120.00189 * 270.02172 * 17 16 15 26 26 H 0.97000 * 120.00081 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47462 * 59.99910 * 9 7 2 28 28 H 1.09002 * 109.47083 * 299.99591 * 9 7 2 29 29 H 1.08997 * 109.47506 * 59.99673 * 10 9 7 30 30 H 1.09000 * 109.47145 * 300.00194 * 10 9 7 31 31 H 0.97002 * 120.00097 * 345.00022 * 11 10 9 32 32 H 1.08991 * 109.47359 * 60.00338 * 15 12 11 33 33 H 1.09000 * 109.47025 * 299.99692 * 15 12 11 34 34 H 1.09004 * 109.47390 * 60.00043 * 16 15 12 35 35 H 1.08997 * 109.47467 * 299.99969 * 16 15 12 36 36 H 1.07991 * 120.00287 * 0.02562 * 18 17 16 37 37 H 1.08004 * 120.00214 * 179.97438 * 19 18 17 38 38 H 1.08004 * 119.99939 * 179.72815 * 24 20 19 39 39 H 1.07999 * 119.99990 * 359.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1939 0.0000 10 6 4.0216 -2.6364 -0.0001 11 7 5.4866 -2.6363 -0.0001 12 16 6.3147 -4.0216 0.3710 13 8 5.7406 -4.4555 1.5962 14 8 7.6822 -3.6430 0.2961 15 6 5.8981 -5.1708 -0.9694 16 6 6.6107 -6.5046 -0.7375 17 6 6.2642 -7.4595 -1.8506 18 6 7.0449 -7.5048 -2.9905 19 6 6.7273 -8.3811 -4.0113 20 6 5.6287 -9.2117 -3.8925 21 7 5.2884 -10.1497 -4.9860 22 8 5.9765 -10.1899 -5.9900 23 8 4.3207 -10.8819 -4.8811 24 6 4.8446 -9.1622 -2.7552 25 6 5.1653 -8.2898 -1.7320 26 1 -0.4850 0.8400 -0.0004 27 1 3.8745 -0.6807 0.8905 28 1 3.8752 -0.6795 -0.8895 29 1 3.6586 -3.1501 -0.8902 30 1 3.6579 -3.1504 0.8896 31 1 5.9716 -1.8248 -0.2175 32 1 6.2174 -4.7487 -1.9223 33 1 4.8204 -5.3332 -0.9869 34 1 6.2910 -6.9266 0.2154 35 1 7.6884 -6.3426 -0.7197 36 1 7.9034 -6.8563 -3.0832 37 1 7.3370 -8.4163 -4.9021 38 1 3.9837 -9.8080 -2.6643 39 1 4.5554 -8.2544 -0.8415 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273486591.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:41 Heat of formation + Delta-G solvation = -62.725988 kcal Electronic energy + Delta-G solvation = -24465.066128 eV Core-core repulsion = 20502.863594 eV Total energy + Delta-G solvation = -3962.202534 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.49985 -40.15825 -37.16537 -36.87963 -36.03509 -35.67232 -35.22289 -32.79011 -31.94751 -31.12672 -29.81323 -27.10127 -24.68702 -24.28759 -23.74014 -21.90467 -21.02493 -19.76314 -19.33658 -18.98382 -17.85908 -17.82964 -16.95159 -16.75621 -16.45990 -16.06662 -15.84791 -15.29797 -14.79120 -14.39685 -14.32489 -14.16060 -14.10259 -13.97838 -13.02716 -12.84630 -12.72886 -12.30890 -12.28008 -12.16509 -12.04133 -11.93126 -11.74591 -11.68119 -11.52971 -11.44935 -11.42996 -10.99833 -10.56607 -10.16088 -9.98347 -9.93124 -9.88255 -9.43461 -9.13547 -8.68564 -6.19092 -4.19919 -0.59521 0.16001 0.42465 0.92823 1.04834 2.66660 2.79088 3.20428 3.29535 3.31112 3.63362 3.81965 3.88696 4.00178 4.01930 4.20394 4.25090 4.31790 4.40275 4.58112 4.72872 4.88676 4.99754 5.14036 5.14665 5.22848 5.27622 5.32168 5.46403 5.65117 5.76131 5.89535 6.06934 6.11412 6.38271 7.01093 7.09805 7.17585 7.30249 7.59723 8.33294 8.82950 9.41444 10.93669 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.013403 B = 0.002518 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.647847 B =11119.206853 C =12473.398685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.018 4.018 10 C 0.123 3.877 11 N -1.116 6.116 12 S 2.614 3.386 13 O -0.951 6.951 14 O -0.965 6.965 15 C -0.636 4.636 16 C -0.081 4.081 17 C -0.020 4.020 18 C -0.115 4.115 19 C -0.051 4.051 20 C -0.050 4.050 21 N 0.029 4.971 22 O -0.162 6.162 23 O -0.160 6.160 24 C -0.049 4.049 25 C -0.113 4.113 26 H 0.265 0.735 27 H 0.026 0.974 28 H 0.019 0.981 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.416 0.584 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.151 0.849 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.536 -16.303 -5.150 23.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.566 4.566 8 H 0.094 0.906 9 C -0.057 4.057 10 C -0.002 4.002 11 N -0.877 5.877 12 S 2.705 3.295 13 O -0.941 6.941 14 O -0.955 6.955 15 C -0.763 4.763 16 C -0.119 4.119 17 C -0.021 4.021 18 C -0.134 4.134 19 C -0.070 4.070 20 C -0.133 4.133 21 N 0.548 4.452 22 O -0.378 6.378 23 O -0.376 6.376 24 C -0.068 4.068 25 C -0.132 4.132 26 H 0.075 0.925 27 H 0.044 0.956 28 H 0.037 0.963 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.250 0.750 32 H 0.155 0.845 33 H 0.158 0.842 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.168 0.832 37 H 0.172 0.828 38 H 0.174 0.826 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 15.971 -16.040 -3.831 22.957 hybrid contribution -0.070 0.912 -1.200 1.509 sum 15.901 -15.128 -5.032 22.517 Atomic orbital electron populations 1.69891 1.06311 1.27192 1.50159 1.24994 0.94757 0.99229 0.94230 0.86774 0.80410 0.83522 0.78547 1.20221 1.21206 1.18928 1.20934 0.88702 0.94860 1.52136 0.90640 1.19746 0.97666 0.90964 0.97287 1.21492 0.75300 1.02368 1.01032 1.55577 1.17400 1.26449 1.88264 1.04811 0.73636 0.74959 0.76102 1.93620 1.78736 1.82444 1.39280 1.93586 1.33283 1.81175 1.87498 1.30782 1.11849 1.11392 1.22325 1.20460 1.01875 0.91573 0.98013 1.20169 0.93350 0.93727 0.94842 1.21178 1.01045 0.98946 0.92228 1.21076 0.93816 0.91959 1.00168 1.21173 1.02288 0.99135 0.90729 1.43634 0.99633 1.00276 1.01651 1.94541 1.49578 1.74096 1.19549 1.94553 1.18490 1.38250 1.86301 1.21110 0.98241 0.97265 0.90226 1.21229 0.97335 0.95186 0.99440 0.92469 0.95555 0.96277 0.92443 0.90571 0.74977 0.84459 0.84212 0.88167 0.88335 0.83180 0.82756 0.82633 0.82969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.43 13.96 55.43 0.77 -25.66 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 20.52 27.47 -169.99 -4.67 15.85 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 7 C -0.53 -13.92 9.66 -34.44 -0.33 -14.26 16 8 H 0.08 2.11 7.99 -52.49 -0.42 1.70 16 9 C -0.02 -0.38 4.18 -27.89 -0.12 -0.49 16 10 C 0.12 2.05 6.07 -4.04 -0.02 2.02 16 11 N -1.12 -14.89 5.89 -10.62 -0.06 -14.95 16 12 S 2.61 30.08 5.46 -107.50 -0.59 29.49 16 13 O -0.95 -14.36 17.50 -57.54 -1.01 -15.37 16 14 O -0.97 -13.16 18.08 -57.54 -1.04 -14.20 16 15 C -0.64 -4.67 6.05 37.16 0.22 -4.44 16 16 C -0.08 -0.49 5.35 -27.89 -0.15 -0.64 16 17 C -0.02 -0.12 5.13 -104.63 -0.54 -0.66 16 18 C -0.12 -0.67 9.70 -39.58 -0.38 -1.05 16 19 C -0.05 -0.36 9.56 -39.58 -0.38 -0.74 16 20 C -0.05 -0.45 6.85 -79.95 -0.55 -1.00 16 21 N 0.03 0.33 4.45 33.96 0.15 0.48 16 22 O -0.16 -1.95 18.45 -29.46 -0.54 -2.49 16 23 O -0.16 -1.95 18.45 -29.46 -0.54 -2.49 16 24 C -0.05 -0.36 9.56 -39.58 -0.38 -0.74 16 25 C -0.11 -0.71 9.70 -39.58 -0.38 -1.09 16 26 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.03 0.57 7.20 -51.93 -0.37 0.20 16 28 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 1.32 7.70 -51.93 -0.40 0.92 16 31 H 0.42 5.12 8.62 -34.47 -0.30 4.82 16 32 H 0.14 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.14 0.94 8.14 -51.92 -0.42 0.52 16 34 H 0.10 0.51 8.09 -51.93 -0.42 0.09 16 35 H 0.10 0.46 8.09 -51.93 -0.42 0.04 16 36 H 0.15 0.52 8.06 -52.49 -0.42 0.10 16 37 H 0.15 0.89 7.61 -52.48 -0.40 0.49 16 38 H 0.16 0.98 7.61 -52.48 -0.40 0.58 16 39 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 357.05 15.07 5.38 5.38 Total: -1.00 -35.42 357.05 -10.05 -45.47 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -4.80 Total: -0.27 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -3.11 Total: -21.24 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.86 Total: -40.13 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -3.13 Total: -34.55 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.67 Total: 15.85 kcal Atomic # 16 Polarization: 30.08 SS G_CDS: -0.59 Total: 29.49 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.42 -10.05 -45.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273486591.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.256 kcal (2) G-P(sol) polarization free energy of solvation -35.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds