Wall clock time and date at job start Tue Mar 31 2020 14:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99743 * 2 1 4 4 H 1.48496 * 109.47220 * 269.99825 * 3 2 1 5 5 H 1.48493 * 109.47122 * 30.00101 * 3 2 1 6 6 H 1.48503 * 109.46921 * 149.99887 * 3 2 1 7 7 C 1.37878 * 120.00493 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99548 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00213 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47149 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47195 * 179.97438 * 10 9 7 12 12 S 1.65606 * 120.00212 * 164.99805 * 11 10 9 13 13 O 1.42096 * 104.27590 * 308.93441 * 12 11 10 14 14 O 1.42091 * 104.27893 * 181.06974 * 12 11 10 15 15 C 1.81410 * 104.44573 * 65.00050 * 12 11 10 16 16 C 1.53000 * 109.46769 * 180.02562 * 15 12 11 17 17 C 1.50696 * 109.47110 * 179.97438 * 16 15 12 18 18 C 1.38238 * 119.99764 * 89.99849 * 17 16 15 19 19 C 1.38234 * 119.99693 * 179.97438 * 18 17 16 20 20 C 1.38234 * 120.00240 * 0.02562 * 19 18 17 21 21 N 1.48026 * 119.99930 * 179.97438 * 20 19 18 22 22 O 1.21793 * 119.99867 * 0.02562 * 21 20 19 23 23 O 1.21799 * 119.99956 * 179.97438 * 21 20 19 24 24 C 1.38233 * 120.00037 * 0.26327 * 20 19 18 25 25 C 1.38234 * 120.00189 * 270.02172 * 17 16 15 26 26 H 0.97000 * 120.00081 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47462 * 59.99910 * 9 7 2 28 28 H 1.09002 * 109.47083 * 299.99591 * 9 7 2 29 29 H 1.08997 * 109.47506 * 59.99673 * 10 9 7 30 30 H 1.09000 * 109.47145 * 300.00194 * 10 9 7 31 31 H 0.97002 * 120.00097 * 345.00022 * 11 10 9 32 32 H 1.08991 * 109.47359 * 60.00338 * 15 12 11 33 33 H 1.09000 * 109.47025 * 299.99692 * 15 12 11 34 34 H 1.09004 * 109.47390 * 60.00043 * 16 15 12 35 35 H 1.08997 * 109.47467 * 299.99969 * 16 15 12 36 36 H 1.07991 * 120.00287 * 0.02562 * 18 17 16 37 37 H 1.08004 * 120.00214 * 179.97438 * 19 18 17 38 38 H 1.08004 * 119.99939 * 179.72815 * 24 20 19 39 39 H 1.07999 * 119.99990 * 359.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1939 0.0000 10 6 4.0216 -2.6364 -0.0001 11 7 5.4866 -2.6363 -0.0001 12 16 6.3147 -4.0216 0.3710 13 8 5.7406 -4.4555 1.5962 14 8 7.6822 -3.6430 0.2961 15 6 5.8981 -5.1708 -0.9694 16 6 6.6107 -6.5046 -0.7375 17 6 6.2642 -7.4595 -1.8506 18 6 7.0449 -7.5048 -2.9905 19 6 6.7273 -8.3811 -4.0113 20 6 5.6287 -9.2117 -3.8925 21 7 5.2884 -10.1497 -4.9860 22 8 5.9765 -10.1899 -5.9900 23 8 4.3207 -10.8819 -4.8811 24 6 4.8446 -9.1622 -2.7552 25 6 5.1653 -8.2898 -1.7320 26 1 -0.4850 0.8400 -0.0004 27 1 3.8745 -0.6807 0.8905 28 1 3.8752 -0.6795 -0.8895 29 1 3.6586 -3.1501 -0.8902 30 1 3.6579 -3.1504 0.8896 31 1 5.9716 -1.8248 -0.2175 32 1 6.2174 -4.7487 -1.9223 33 1 4.8204 -5.3332 -0.9869 34 1 6.2910 -6.9266 0.2154 35 1 7.6884 -6.3426 -0.7197 36 1 7.9034 -6.8563 -3.0832 37 1 7.3370 -8.4163 -4.9021 38 1 3.9837 -9.8080 -2.6643 39 1 4.5554 -8.2544 -0.8415 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273486591.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:40 Heat of formation + Delta-G solvation = -87.601271 kcal Electronic energy + Delta-G solvation = -24466.144801 eV Core-core repulsion = 20502.863594 eV Total energy + Delta-G solvation = -3963.281207 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.28424 -40.68407 -38.17933 -37.72511 -37.10972 -36.93939 -35.77716 -34.69516 -32.43012 -31.73889 -31.48361 -27.80996 -26.36536 -24.92483 -24.22509 -22.70673 -22.44483 -20.42731 -20.32042 -19.79251 -19.09650 -18.64285 -18.53226 -17.61297 -17.23122 -16.70699 -16.65133 -16.24370 -15.78215 -15.74088 -15.52149 -15.02290 -14.69401 -14.61772 -14.59025 -13.61989 -13.50051 -13.43312 -13.38532 -13.22852 -13.15447 -13.02470 -12.80244 -12.71545 -12.36062 -12.35449 -12.25332 -12.18811 -11.85840 -11.80539 -11.64444 -11.43478 -10.77245 -10.48179 -10.40676 -10.23434 -8.28580 -6.33425 -1.31685 -0.71681 -0.04168 0.22681 0.35635 1.37694 1.41043 1.51063 1.77019 2.20893 2.36871 2.81708 3.07678 3.25677 3.36344 3.39933 3.50482 3.60625 3.71670 3.93900 3.98538 4.17845 4.29266 4.42939 4.48655 4.52568 4.68953 4.70604 4.76645 4.78848 4.86382 4.93055 5.13431 5.18634 5.40376 5.46350 5.47683 5.63764 6.11010 6.27689 6.41941 6.75530 7.31646 8.87416 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.013403 B = 0.002518 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.647847 B =11119.206853 C =12473.398685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.947 3.053 4 H -0.264 1.264 5 H -0.290 1.290 6 H -0.246 1.246 7 C -0.532 4.532 8 H 0.043 0.957 9 C -0.021 4.021 10 C 0.132 3.868 11 N -1.119 6.119 12 S 2.622 3.378 13 O -0.994 6.994 14 O -0.986 6.986 15 C -0.611 4.611 16 C -0.090 4.090 17 C -0.015 4.015 18 C -0.108 4.108 19 C -0.054 4.054 20 C -0.070 4.070 21 N 0.030 4.970 22 O -0.179 6.179 23 O -0.189 6.189 24 C -0.057 4.057 25 C -0.113 4.113 26 H 0.266 0.734 27 H 0.022 0.978 28 H 0.035 0.965 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.421 0.579 32 H 0.164 0.836 33 H 0.152 0.848 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.180 0.820 37 H 0.164 0.836 38 H 0.159 0.841 39 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.918 -15.730 -5.477 24.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.192 4.192 3 Si 0.771 3.229 4 H -0.189 1.189 5 H -0.216 1.216 6 H -0.169 1.169 7 C -0.571 4.571 8 H 0.062 0.938 9 C -0.060 4.060 10 C 0.006 3.994 11 N -0.878 5.878 12 S 2.719 3.281 13 O -0.984 6.984 14 O -0.977 6.977 15 C -0.743 4.743 16 C -0.128 4.128 17 C -0.016 4.016 18 C -0.127 4.127 19 C -0.073 4.073 20 C -0.153 4.153 21 N 0.544 4.456 22 O -0.393 6.393 23 O -0.400 6.400 24 C -0.076 4.076 25 C -0.131 4.131 26 H 0.075 0.925 27 H 0.040 0.960 28 H 0.053 0.947 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.256 0.744 32 H 0.182 0.818 33 H 0.170 0.830 34 H 0.129 0.871 35 H 0.136 0.864 36 H 0.197 0.803 37 H 0.182 0.818 38 H 0.177 0.823 39 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 18.370 -15.459 -4.131 24.362 hybrid contribution -0.785 0.649 -1.070 1.477 sum 17.585 -14.810 -5.202 23.571 Atomic orbital electron populations 1.70050 1.08298 1.28167 1.52439 1.25961 0.95543 1.03445 0.94201 0.85710 0.79541 0.78464 0.79231 1.18913 1.21625 1.16937 1.21353 0.91587 0.93569 1.50557 0.93839 1.19703 0.94293 0.94336 0.97633 1.21165 0.77195 0.99374 1.01630 1.55431 1.15779 1.27984 1.88652 1.04412 0.72634 0.74763 0.76331 1.93570 1.79103 1.82804 1.42916 1.93559 1.34182 1.81858 1.88093 1.30528 1.12962 1.10397 1.20454 1.20644 1.03112 0.90557 0.98493 1.20248 0.93108 0.93431 0.94834 1.21515 1.01499 0.98413 0.91238 1.21314 0.93241 0.91677 1.01075 1.21426 1.03851 0.99630 0.90417 1.44026 0.99153 1.00355 1.02062 1.94512 1.49658 1.74536 1.20626 1.94534 1.19273 1.39530 1.86713 1.21275 0.98370 0.97768 0.90145 1.21498 0.97571 0.94521 0.99550 0.92516 0.95964 0.94673 0.90272 0.91792 0.74438 0.81786 0.82989 0.87117 0.86378 0.80296 0.81824 0.82313 0.81068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.10 13.96 21.45 0.30 -56.80 16 2 C 0.01 0.32 5.47 84.66 0.46 0.78 16 3 Si 0.95 41.69 27.47 68.60 1.88 43.57 16 4 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 6 H -0.25 -9.97 6.54 99.48 0.65 -9.32 16 7 C -0.53 -28.14 9.66 25.60 0.25 -27.90 16 8 H 0.04 2.50 7.99 -2.91 -0.02 2.47 16 9 C -0.02 -0.85 4.18 29.85 0.12 -0.72 16 10 C 0.13 4.16 6.07 86.38 0.52 4.68 16 11 N -1.12 -27.10 5.89 -187.50 -1.10 -28.20 16 12 S 2.62 53.64 5.46 -56.49 -0.31 53.33 16 13 O -0.99 -28.64 17.50 -127.65 -2.23 -30.87 16 14 O -0.99 -24.39 18.08 -127.65 -2.31 -26.70 16 15 C -0.61 -6.31 6.05 71.98 0.44 -5.87 16 16 C -0.09 -0.69 5.35 29.85 0.16 -0.53 16 17 C -0.01 -0.12 5.13 -19.87 -0.10 -0.22 16 18 C -0.11 -0.82 9.70 22.27 0.22 -0.61 16 19 C -0.05 -0.63 9.56 22.27 0.21 -0.42 16 20 C -0.07 -1.17 6.85 36.37 0.25 -0.92 16 21 N 0.03 0.69 4.45 -46.46 -0.21 0.49 16 22 O -0.18 -4.35 18.45 18.89 0.35 -4.00 16 23 O -0.19 -4.77 18.45 18.89 0.35 -4.42 16 24 C -0.06 -0.75 9.56 22.27 0.21 -0.54 16 25 C -0.11 -1.07 9.70 22.27 0.22 -0.86 16 26 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 27 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 28 H 0.03 1.34 7.57 -2.39 -0.02 1.32 16 29 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.06 2.16 7.70 -2.39 -0.02 2.14 16 31 H 0.42 9.27 8.62 -96.74 -0.83 8.43 16 32 H 0.16 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.15 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.11 0.69 8.09 -2.38 -0.02 0.67 16 35 H 0.12 0.52 8.09 -2.39 -0.02 0.50 16 36 H 0.18 0.31 8.06 -2.92 -0.02 0.29 16 37 H 0.16 1.55 7.61 -2.91 -0.02 1.52 16 38 H 0.16 1.90 7.61 -2.91 -0.02 1.88 16 39 H 0.17 0.92 8.06 -2.91 -0.02 0.89 16 Total: -1.00 -78.75 357.05 -0.12 -78.88 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 0.20 Total: 7.84 kcal Atomic # 6 Polarization: -36.08 SS G_CDS: 2.96 Total: -33.12 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -1.01 Total: -84.51 kcal Atomic # 8 Polarization: -62.14 SS G_CDS: -3.84 Total: -65.99 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 1.88 Total: 43.57 kcal Atomic # 16 Polarization: 53.64 SS G_CDS: -0.31 Total: 53.33 kcal Total: -78.75 -0.12 -78.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273486591.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.724 kcal (2) G-P(sol) polarization free energy of solvation -78.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds