Wall clock time and date at job start Tue Mar 31 2020 15:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47372 * 2 1 4 4 C 1.38258 * 120.00175 * 270.06182 * 3 2 1 5 5 C 1.38203 * 120.00353 * 180.22913 * 4 3 2 6 6 C 1.38261 * 120.00202 * 359.81195 * 5 4 3 7 7 N 1.48013 * 120.00148 * 179.97438 * 6 5 4 8 8 O 1.21802 * 119.99758 * 180.02562 * 7 6 5 9 9 O 1.21793 * 120.00251 * 0.02562 * 7 6 5 10 10 C 1.38218 * 119.99653 * 0.02562 * 6 5 4 11 11 C 1.38209 * 120.00158 * 89.87083 * 3 2 1 12 12 S 1.76201 * 119.99981 * 359.97438 * 11 3 2 13 13 O 1.42100 * 106.40404 * 310.21217 * 12 11 3 14 14 O 1.42104 * 106.40346 * 177.29072 * 12 11 3 15 15 N 1.65603 * 107.21691 * 63.75254 * 12 11 3 16 16 C 1.46495 * 120.00259 * 63.53832 * 15 12 11 17 17 C 1.53003 * 109.47016 * 163.21350 * 16 15 12 18 18 C 1.50706 * 109.46906 * 175.10475 * 17 16 15 19 19 H 1.08004 * 119.99907 * 4.96668 * 18 17 16 20 20 C 1.37873 * 119.99852 * 184.96107 * 18 17 16 21 21 N 1.31510 * 119.99961 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99907 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47076 * 89.99940 * 22 20 18 24 24 H 1.48499 * 109.47129 * 210.00151 * 22 20 18 25 25 H 1.48498 * 109.46993 * 330.00121 * 22 20 18 26 26 H 1.08995 * 109.47329 * 186.70448 * 1 2 3 27 27 H 1.09006 * 109.46876 * 306.70507 * 1 2 3 28 28 H 1.08997 * 109.46488 * 66.69673 * 1 2 3 29 29 H 1.08990 * 109.47299 * 239.99315 * 2 1 3 30 30 H 1.09007 * 109.46713 * 119.99676 * 2 1 3 31 31 H 1.08007 * 119.99749 * 0.02562 * 4 3 2 32 32 H 1.07999 * 120.00129 * 179.78722 * 5 4 3 33 33 H 1.07994 * 120.00229 * 179.97438 * 10 6 5 34 34 H 0.97006 * 119.99702 * 243.53768 * 15 12 11 35 35 H 1.08998 * 109.47444 * 283.21623 * 16 15 12 36 36 H 1.08998 * 109.46887 * 43.21689 * 16 15 12 37 37 H 1.08991 * 109.47223 * 295.10620 * 17 16 15 38 38 H 1.09003 * 109.46922 * 55.11513 * 17 16 15 39 39 H 0.97007 * 119.99632 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2617 2.0730 -1.1973 5 6 2.7269 3.3743 -1.1974 6 6 2.9594 4.0255 -0.0001 7 7 3.4583 5.4190 -0.0001 8 8 3.6635 5.9924 1.0547 9 8 3.6635 5.9924 -1.0549 10 6 2.7271 3.3746 1.1970 11 6 2.2603 2.0732 1.1969 12 16 1.9627 1.2440 2.7229 13 8 0.6603 0.6837 2.6278 14 8 2.3476 2.1459 3.7514 15 7 3.0159 -0.0315 2.8011 16 6 4.4599 0.2122 2.8420 17 6 5.1767 -1.0501 3.3255 18 6 6.6673 -0.8401 3.2534 19 1 7.0638 0.1252 2.9751 20 6 7.5247 -1.8803 3.5427 21 7 7.0418 -3.0558 3.8811 22 14 9.3724 -1.6199 3.4540 23 1 9.8726 -1.1676 4.7770 24 1 10.0350 -2.8963 3.0842 25 1 9.6783 -0.5886 2.4302 26 1 -0.3634 -1.0206 0.1200 27 1 -0.3633 0.6143 0.8240 28 1 -0.3632 0.4065 -0.9438 29 1 1.8934 -0.5139 -0.8898 30 1 1.8933 -0.5138 0.8901 31 1 2.0803 1.5643 -2.1327 32 1 2.9093 3.8826 -2.1327 33 1 2.9091 3.8830 2.1322 34 1 2.6767 -0.9402 2.8199 35 1 4.8131 0.4709 1.8438 36 1 4.6703 1.0341 3.5263 37 1 4.8886 -1.2595 4.3556 38 1 4.8973 -1.8918 2.6917 39 1 7.6452 -3.7876 4.0850 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273569840.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:32 Heat of formation + Delta-G solvation = -61.380001 kcal Electronic energy + Delta-G solvation = -26104.601661 eV Core-core repulsion = 22142.457493 eV Total energy + Delta-G solvation = -3962.144167 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 2.69 seconds Orbital eigenvalues (eV) -42.39301 -40.12025 -37.46109 -36.75482 -35.94877 -35.76395 -34.74005 -32.86904 -32.09942 -30.74396 -29.31957 -26.78377 -24.66956 -24.21699 -23.77081 -21.80494 -21.33817 -20.28144 -19.18622 -18.89492 -17.74967 -17.57781 -16.83844 -16.64058 -16.43169 -16.33635 -15.38875 -14.78735 -14.69115 -14.43087 -14.31084 -13.93818 -13.88405 -13.40770 -12.95043 -12.70669 -12.54079 -12.18375 -12.04982 -11.97695 -11.75659 -11.70149 -11.50612 -11.43494 -11.31221 -11.29685 -11.14895 -11.07023 -10.73016 -10.58183 -10.22141 -9.81072 -9.69454 -9.38136 -9.16868 -8.50877 -6.17507 -4.21439 -0.49804 0.08181 0.33585 0.99532 1.13839 2.56915 2.98357 3.23639 3.30548 3.33319 3.55968 3.83365 3.97352 4.08281 4.22806 4.33436 4.39152 4.64860 4.81670 4.94418 4.96115 5.07296 5.18503 5.19782 5.31008 5.40302 5.52262 5.69117 5.74713 5.77175 5.99710 6.15567 6.19050 6.26040 6.54270 7.13960 7.43171 7.43314 7.51231 7.79855 8.16824 8.84114 9.44077 10.93677 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.010666 B = 0.004095 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.463889 B = 6836.749185 C = 8087.562826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C 0.076 3.924 4 C -0.137 4.137 5 C -0.004 4.004 6 C -0.073 4.073 7 N 0.031 4.969 8 O -0.152 6.152 9 O -0.161 6.161 10 C 0.049 3.951 11 C -0.678 4.678 12 S 2.692 3.308 13 O -0.952 6.952 14 O -0.950 6.950 15 N -1.106 6.106 16 C 0.116 3.884 17 C 0.019 3.981 18 C -0.527 4.527 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.892 5.892 22 Si 0.896 3.104 23 H -0.278 1.278 24 H -0.286 1.286 25 H -0.273 1.273 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.156 0.844 32 H 0.160 0.840 33 H 0.173 0.827 34 H 0.419 0.581 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.024 0.976 38 H 0.029 0.971 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.246 7.318 -11.310 18.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C 0.074 3.926 4 C -0.156 4.156 5 C -0.023 4.023 6 C -0.157 4.157 7 N 0.551 4.449 8 O -0.369 6.369 9 O -0.376 6.376 10 C 0.029 3.971 11 C -0.761 4.761 12 S 2.777 3.223 13 O -0.942 6.942 14 O -0.939 6.939 15 N -0.870 5.870 16 C -0.009 4.009 17 C -0.020 4.020 18 C -0.566 4.566 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.530 5.530 22 Si 0.723 3.277 23 H -0.204 1.204 24 H -0.211 1.211 25 H -0.198 1.198 26 H 0.090 0.910 27 H 0.106 0.894 28 H 0.072 0.928 29 H 0.116 0.884 30 H 0.105 0.895 31 H 0.174 0.826 32 H 0.178 0.822 33 H 0.191 0.809 34 H 0.256 0.744 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.043 0.957 38 H 0.047 0.953 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.968 6.925 -10.685 18.900 hybrid contribution 1.572 0.216 -0.825 1.788 sum -12.396 7.141 -11.510 18.362 Atomic orbital electron populations 1.21921 0.91854 1.04184 1.03116 1.21173 0.98685 0.90304 1.05587 1.20113 0.85152 0.95763 0.91537 1.21236 1.01657 0.93678 0.99035 1.21300 0.89591 0.94155 0.97253 1.21143 1.13284 0.84211 0.97032 1.43498 0.98205 1.02619 1.00601 1.94590 1.54840 1.67017 1.20483 1.94525 1.55285 1.67119 1.20697 1.20827 0.85839 0.91846 0.98546 1.31349 1.16765 1.05905 1.22106 1.02204 0.73261 0.73546 0.73263 1.93587 1.36392 1.77657 1.86546 1.93606 1.83332 1.64917 1.52091 1.55560 1.19296 1.21747 1.90381 1.21747 0.75667 1.02972 1.00511 1.19289 0.94738 0.90685 0.97268 1.21060 0.90652 0.97338 1.47548 0.92306 1.24979 0.99165 0.95065 0.94882 1.69947 1.35165 1.01814 1.46080 0.86538 0.84973 0.77599 0.78586 1.20424 1.21133 1.19813 0.91014 0.89360 0.92751 0.88403 0.89543 0.82612 0.82229 0.80948 0.74421 0.92869 0.91146 0.95722 0.95293 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.38 37.16 0.35 -0.97 16 2 C -0.12 -1.07 5.31 -27.88 -0.15 -1.22 16 3 C 0.08 0.76 5.12 -104.63 -0.54 0.23 16 4 C -0.14 -1.12 9.70 -39.59 -0.38 -1.50 16 5 C 0.00 -0.04 9.56 -39.59 -0.38 -0.41 16 6 C -0.07 -0.89 6.85 -79.95 -0.55 -1.43 16 7 N 0.03 0.43 4.45 33.96 0.15 0.58 16 8 O -0.15 -2.30 18.45 -29.46 -0.54 -2.84 16 9 O -0.16 -2.21 18.45 -29.46 -0.54 -2.76 16 10 C 0.05 0.63 9.06 -39.58 -0.36 0.27 16 11 C -0.68 -8.23 5.85 -39.58 -0.23 -8.46 16 12 S 2.69 37.12 4.92 -107.50 -0.53 36.59 16 13 O -0.95 -13.29 14.10 -57.17 -0.81 -14.09 16 14 O -0.95 -16.03 16.47 -57.17 -0.94 -16.97 16 15 N -1.11 -15.93 4.75 -10.62 -0.05 -15.98 16 16 C 0.12 2.07 6.16 -4.04 -0.02 2.05 16 17 C 0.02 0.44 5.12 -27.88 -0.14 0.29 16 18 C -0.53 -13.78 9.11 -34.44 -0.31 -14.09 16 19 H 0.06 1.49 7.75 -52.48 -0.41 1.08 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -25.12 13.29 55.43 0.74 -24.38 16 22 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.09 0.93 5.87 -51.93 -0.30 0.62 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.10 0.65 8.09 -51.93 -0.42 0.23 16 30 H 0.09 0.83 5.05 -51.92 -0.26 0.57 16 31 H 0.16 0.74 8.06 -52.48 -0.42 0.32 16 32 H 0.16 1.11 7.61 -52.49 -0.40 0.71 16 33 H 0.17 2.19 6.89 -52.49 -0.36 1.82 16 34 H 0.42 5.35 8.26 -34.47 -0.28 5.07 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 1.29 7.75 -51.93 -0.40 0.89 16 37 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 346.76 15.07 5.23 5.23 Total: -1.00 -31.95 346.76 -9.65 -41.60 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -4.51 Total: 1.11 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -2.81 Total: -23.70 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.84 Total: -39.78 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -2.83 Total: -36.66 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 37.12 SS G_CDS: -0.53 Total: 36.59 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.95 -9.65 -41.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273569840.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.782 kcal (2) G-P(sol) polarization free energy of solvation -31.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.70 seconds