Wall clock time and date at job start Tue Mar 31 2020 15:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47372 * 2 1 4 4 C 1.38258 * 120.00175 * 270.06182 * 3 2 1 5 5 C 1.38203 * 120.00353 * 180.22913 * 4 3 2 6 6 C 1.38261 * 120.00202 * 359.81195 * 5 4 3 7 7 N 1.48013 * 120.00148 * 179.97438 * 6 5 4 8 8 O 1.21802 * 119.99758 * 180.02562 * 7 6 5 9 9 O 1.21793 * 120.00251 * 0.02562 * 7 6 5 10 10 C 1.38218 * 119.99653 * 0.02562 * 6 5 4 11 11 C 1.38209 * 120.00158 * 89.87083 * 3 2 1 12 12 S 1.76201 * 119.99981 * 359.97438 * 11 3 2 13 13 O 1.42100 * 106.40404 * 310.21217 * 12 11 3 14 14 O 1.42104 * 106.40346 * 177.29072 * 12 11 3 15 15 N 1.65603 * 107.21691 * 63.75254 * 12 11 3 16 16 C 1.46495 * 120.00259 * 63.53832 * 15 12 11 17 17 C 1.53003 * 109.47016 * 163.21350 * 16 15 12 18 18 C 1.50706 * 109.46906 * 175.10475 * 17 16 15 19 19 H 1.08004 * 119.99907 * 4.96668 * 18 17 16 20 20 C 1.37873 * 119.99852 * 184.96107 * 18 17 16 21 21 N 1.31510 * 119.99961 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99907 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47076 * 89.99940 * 22 20 18 24 24 H 1.48499 * 109.47129 * 210.00151 * 22 20 18 25 25 H 1.48498 * 109.46993 * 330.00121 * 22 20 18 26 26 H 1.08995 * 109.47329 * 186.70448 * 1 2 3 27 27 H 1.09006 * 109.46876 * 306.70507 * 1 2 3 28 28 H 1.08997 * 109.46488 * 66.69673 * 1 2 3 29 29 H 1.08990 * 109.47299 * 239.99315 * 2 1 3 30 30 H 1.09007 * 109.46713 * 119.99676 * 2 1 3 31 31 H 1.08007 * 119.99749 * 0.02562 * 4 3 2 32 32 H 1.07999 * 120.00129 * 179.78722 * 5 4 3 33 33 H 1.07994 * 120.00229 * 179.97438 * 10 6 5 34 34 H 0.97006 * 119.99702 * 243.53768 * 15 12 11 35 35 H 1.08998 * 109.47444 * 283.21623 * 16 15 12 36 36 H 1.08998 * 109.46887 * 43.21689 * 16 15 12 37 37 H 1.08991 * 109.47223 * 295.10620 * 17 16 15 38 38 H 1.09003 * 109.46922 * 55.11513 * 17 16 15 39 39 H 0.97007 * 119.99632 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2617 2.0730 -1.1973 5 6 2.7269 3.3743 -1.1974 6 6 2.9594 4.0255 -0.0001 7 7 3.4583 5.4190 -0.0001 8 8 3.6635 5.9924 1.0547 9 8 3.6635 5.9924 -1.0549 10 6 2.7271 3.3746 1.1970 11 6 2.2603 2.0732 1.1969 12 16 1.9627 1.2440 2.7229 13 8 0.6603 0.6837 2.6278 14 8 2.3476 2.1459 3.7514 15 7 3.0159 -0.0315 2.8011 16 6 4.4599 0.2122 2.8420 17 6 5.1767 -1.0501 3.3255 18 6 6.6673 -0.8401 3.2534 19 1 7.0638 0.1252 2.9751 20 6 7.5247 -1.8803 3.5427 21 7 7.0418 -3.0558 3.8811 22 14 9.3724 -1.6199 3.4540 23 1 9.8726 -1.1676 4.7770 24 1 10.0350 -2.8963 3.0842 25 1 9.6783 -0.5886 2.4302 26 1 -0.3634 -1.0206 0.1200 27 1 -0.3633 0.6143 0.8240 28 1 -0.3632 0.4065 -0.9438 29 1 1.8934 -0.5139 -0.8898 30 1 1.8933 -0.5138 0.8901 31 1 2.0803 1.5643 -2.1327 32 1 2.9093 3.8826 -2.1327 33 1 2.9091 3.8830 2.1322 34 1 2.6767 -0.9402 2.8199 35 1 4.8131 0.4709 1.8438 36 1 4.6703 1.0341 3.5263 37 1 4.8886 -1.2595 4.3556 38 1 4.8973 -1.8918 2.6917 39 1 7.6452 -3.7876 4.0850 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273569840.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:28 Heat of formation + Delta-G solvation = -81.834554 kcal Electronic energy + Delta-G solvation = -26105.488637 eV Core-core repulsion = 22142.457493 eV Total energy + Delta-G solvation = -3963.031143 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 4.50 seconds Orbital eigenvalues (eV) -43.41179 -40.95339 -38.63370 -37.81422 -37.21194 -37.13476 -35.60208 -34.74739 -32.92748 -31.54701 -31.06560 -27.69402 -26.48200 -25.09522 -24.57813 -23.04436 -22.58350 -21.31074 -20.33136 -19.92630 -18.90796 -18.75432 -18.26401 -17.83765 -17.60301 -17.19712 -16.58055 -16.44262 -15.73055 -15.56867 -15.43524 -15.04304 -14.72217 -14.42637 -14.15747 -13.84322 -13.48645 -13.41164 -13.31731 -13.28044 -13.13249 -13.03266 -12.83997 -12.51923 -12.50227 -12.45128 -12.41413 -12.38225 -11.98315 -11.86765 -11.52065 -11.33623 -11.06162 -10.65806 -10.58950 -10.39803 -8.22304 -6.32253 -1.43019 -0.92725 -0.65507 0.06101 0.18367 1.41971 1.43503 1.53039 1.67233 1.92480 2.41209 2.47268 3.00933 3.13280 3.20071 3.20823 3.41121 3.55751 3.75176 4.05913 4.10840 4.24612 4.27514 4.30164 4.44057 4.47144 4.65566 4.72694 4.76965 4.90297 4.97193 5.06556 5.11827 5.23620 5.48230 5.52266 5.62289 5.79144 5.96762 6.20350 6.34676 6.83051 7.37201 8.89314 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.010666 B = 0.004095 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.463889 B = 6836.749185 C = 8087.562826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.127 4.127 3 C 0.076 3.924 4 C -0.119 4.119 5 C 0.007 3.993 6 C -0.087 4.087 7 N 0.031 4.969 8 O -0.206 6.206 9 O -0.140 6.140 10 C 0.034 3.966 11 C -0.685 4.685 12 S 2.707 3.293 13 O -0.953 6.953 14 O -0.987 6.987 15 N -1.103 6.103 16 C 0.132 3.868 17 C 0.021 3.979 18 C -0.545 4.545 19 H 0.063 0.937 20 C 0.009 3.991 21 N -0.927 5.927 22 Si 0.958 3.042 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.264 1.264 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.130 0.870 30 H 0.074 0.926 31 H 0.204 0.796 32 H 0.191 0.809 33 H 0.159 0.841 34 H 0.427 0.573 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.000 1.000 38 H 0.019 0.981 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.383 7.089 -14.531 20.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.164 4.164 3 C 0.074 3.926 4 C -0.137 4.137 5 C -0.012 4.012 6 C -0.171 4.171 7 N 0.548 4.452 8 O -0.411 6.411 9 O -0.363 6.363 10 C 0.014 3.986 11 C -0.772 4.772 12 S 2.797 3.203 13 O -0.943 6.943 14 O -0.977 6.977 15 N -0.866 5.866 16 C 0.006 3.994 17 C -0.018 4.018 18 C -0.583 4.583 19 H 0.081 0.919 20 C -0.190 4.190 21 N -0.566 5.566 22 Si 0.784 3.216 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.188 1.188 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.148 0.852 30 H 0.092 0.908 31 H 0.221 0.779 32 H 0.208 0.792 33 H 0.177 0.823 34 H 0.264 0.736 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.018 0.982 38 H 0.038 0.962 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.115 6.697 -13.764 20.822 hybrid contribution 1.512 0.256 0.029 1.533 sum -12.604 6.954 -13.735 19.896 Atomic orbital electron populations 1.21936 0.91607 1.04295 1.03426 1.21334 0.98861 0.89549 1.06629 1.20445 0.84318 0.96397 0.91438 1.21751 0.99212 0.92869 0.99897 1.21770 0.87936 0.94458 0.97045 1.21300 1.14539 0.83214 0.98049 1.43762 0.97843 1.03343 1.00264 1.94604 1.57502 1.68080 1.20873 1.94479 1.53851 1.67513 1.20479 1.20760 0.86881 0.92305 0.98704 1.30893 1.18743 1.05691 1.21841 1.01436 0.72781 0.72775 0.73347 1.93592 1.36097 1.77743 1.86872 1.93561 1.83793 1.65729 1.54637 1.55350 1.17827 1.22607 1.90860 1.21334 0.77092 1.00060 1.00909 1.19152 0.94137 0.92689 0.95777 1.21532 0.92430 0.97467 1.46905 0.91895 1.25811 1.03662 0.94872 0.94649 1.70058 1.36681 1.02634 1.47258 0.85545 0.79682 0.77736 0.78685 1.20265 1.20728 1.18799 0.90412 0.91754 0.90397 0.85177 0.90791 0.77908 0.79233 0.82347 0.73575 0.91245 0.91933 0.98206 0.96218 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.38 71.98 0.68 -1.55 16 2 C -0.13 -1.84 5.31 29.85 0.16 -1.68 16 3 C 0.08 1.29 5.12 -19.87 -0.10 1.19 16 4 C -0.12 -1.35 9.70 22.27 0.22 -1.13 16 5 C 0.01 0.10 9.56 22.27 0.21 0.31 16 6 C -0.09 -1.99 6.85 36.38 0.25 -1.74 16 7 N 0.03 0.86 4.45 -46.46 -0.21 0.65 16 8 O -0.21 -6.49 18.45 18.88 0.35 -6.14 16 9 O -0.14 -3.60 18.45 18.90 0.35 -3.25 16 10 C 0.03 0.86 9.06 22.27 0.20 1.06 16 11 C -0.68 -15.98 5.85 22.27 0.13 -15.85 16 12 S 2.71 75.40 4.92 -56.49 -0.28 75.12 16 13 O -0.95 -26.48 14.10 -128.00 -1.80 -28.29 16 14 O -0.99 -34.76 16.47 -128.00 -2.11 -36.87 16 15 N -1.10 -31.87 4.75 -187.50 -0.89 -32.77 16 16 C 0.13 4.75 6.16 86.38 0.53 5.28 16 17 C 0.02 0.99 5.12 29.85 0.15 1.15 16 18 C -0.54 -28.59 9.11 25.60 0.23 -28.36 16 19 H 0.06 3.17 7.75 -2.91 -0.02 3.15 16 20 C 0.01 0.48 5.46 84.65 0.46 0.95 16 21 N -0.93 -52.78 13.29 21.44 0.28 -52.50 16 22 Si 0.96 42.10 29.54 68.60 2.03 44.12 16 23 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 24 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 25 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 26 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.06 1.25 5.87 -2.38 -0.01 1.24 16 28 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.13 1.08 8.09 -2.39 -0.02 1.06 16 30 H 0.07 1.28 5.05 -2.38 -0.01 1.27 16 31 H 0.20 0.45 8.06 -2.91 -0.02 0.42 16 32 H 0.19 1.63 7.61 -2.91 -0.02 1.61 16 33 H 0.16 4.35 6.89 -2.91 -0.02 4.33 16 34 H 0.43 10.94 8.26 -96.74 -0.80 10.14 16 35 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.06 2.35 7.75 -2.39 -0.02 2.33 16 37 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 38 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.26 14.24 8.31 -92.70 -0.77 13.47 16 Total: -1.00 -70.66 346.76 1.14 -69.52 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.30 Total: 10.78 kcal Atomic # 6 Polarization: -43.51 SS G_CDS: 3.12 Total: -40.38 kcal Atomic # 7 Polarization: -83.80 SS G_CDS: -0.81 Total: -84.61 kcal Atomic # 8 Polarization: -71.33 SS G_CDS: -3.22 Total: -74.55 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Atomic # 16 Polarization: 75.40 SS G_CDS: -0.28 Total: 75.12 kcal Total: -70.66 1.14 -69.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273569840.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.317 kcal (2) G-P(sol) polarization free energy of solvation -70.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.50 seconds