Wall clock time and date at job start Tue Mar 31 2020 14:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99657 * 2 1 4 4 H 1.48504 * 109.46871 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47150 * 299.99689 * 3 2 1 6 6 H 1.48498 * 109.47440 * 60.00509 * 3 2 1 7 7 C 1.37874 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00028 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00180 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47164 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.47113 * 180.02562 * 10 9 7 12 12 S 1.65598 * 119.99836 * 165.00286 * 11 10 9 13 13 O 1.42105 * 104.27847 * 308.92659 * 12 11 10 14 14 O 1.42103 * 104.27538 * 181.07116 * 12 11 10 15 15 C 1.81397 * 104.45365 * 64.99857 * 12 11 10 16 16 C 1.53002 * 109.47290 * 179.97438 * 15 12 11 17 17 C 1.50700 * 109.46835 * 180.02562 * 16 15 12 18 18 C 1.38256 * 119.99693 * 97.31776 * 17 16 15 19 19 C 1.38219 * 119.99704 * 179.72185 * 18 17 16 20 20 C 1.38259 * 119.99729 * 0.27745 * 19 18 17 21 21 C 1.38206 * 120.00459 * 359.97091 * 20 19 18 22 22 C 1.38214 * 119.99999 * 277.50371 * 17 16 15 23 23 N 1.48017 * 120.00039 * 0.04239 * 22 17 16 24 24 O 1.21804 * 119.99570 * 186.24778 * 23 22 17 25 25 O 1.21799 * 120.00050 * 6.25535 * 23 22 17 26 26 H 0.97001 * 119.99691 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46942 * 60.00186 * 9 7 2 28 28 H 1.09001 * 109.47294 * 300.00259 * 9 7 2 29 29 H 1.08999 * 109.47091 * 60.00214 * 10 9 7 30 30 H 1.08993 * 109.47460 * 300.00267 * 10 9 7 31 31 H 0.96996 * 119.99980 * 344.99511 * 11 10 9 32 32 H 1.09004 * 109.47113 * 60.00039 * 15 12 11 33 33 H 1.09003 * 109.47225 * 300.00149 * 15 12 11 34 34 H 1.09004 * 109.46788 * 60.00113 * 16 15 12 35 35 H 1.08997 * 109.46961 * 300.00154 * 16 15 12 36 36 H 1.07997 * 120.00392 * 359.97438 * 18 17 16 37 37 H 1.07999 * 119.99803 * 180.24851 * 19 18 17 38 38 H 1.08002 * 119.99562 * 179.97438 * 20 19 18 39 39 H 1.08000 * 120.00541 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 16 2.2987 -6.3404 -0.3724 13 8 2.9619 -6.0597 -1.5975 14 8 1.2871 -7.3356 -0.2983 15 6 3.5018 -6.5546 0.9682 16 6 4.3000 -7.8392 0.7367 17 6 5.2990 -8.0174 1.8508 18 6 5.0015 -8.8407 2.9209 19 6 5.9201 -9.0087 3.9399 20 6 7.1341 -8.3489 3.8918 21 6 7.4295 -7.5218 2.8246 22 6 6.5111 -7.3548 1.8047 23 7 6.8275 -6.4694 0.6615 24 8 7.9366 -5.9757 0.5624 25 8 5.9788 -6.2345 -0.1800 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8719 -3.6043 0.8895 30 1 2.8720 -3.6043 -0.8904 31 1 0.5676 -4.9452 0.2160 32 1 2.9763 -6.6205 1.9209 33 1 4.1813 -5.7025 0.9862 34 1 4.8254 -7.7737 -0.2161 35 1 3.6202 -8.6911 0.7190 36 1 4.0530 -9.3558 2.9586 37 1 5.6893 -9.6550 4.7738 38 1 7.8518 -8.4798 4.6883 39 1 8.3776 -7.0061 2.7873 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273652158.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:45 Heat of formation + Delta-G solvation = -54.676625 kcal Electronic energy + Delta-G solvation = -25673.863483 eV Core-core repulsion = 21712.009996 eV Total energy + Delta-G solvation = -3961.853487 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.44257 -39.95959 -36.92389 -36.83316 -35.70280 -35.33079 -34.76262 -32.71315 -32.35675 -30.55205 -29.10211 -26.84026 -24.85498 -24.45225 -23.07002 -22.06705 -21.11288 -19.34822 -19.05592 -18.70235 -17.79049 -17.48428 -16.70781 -16.45829 -16.24499 -16.15509 -15.59643 -15.22942 -14.64645 -14.40670 -14.13565 -13.91851 -13.82510 -13.67547 -12.80632 -12.78831 -12.52695 -12.19546 -12.02657 -11.86947 -11.78894 -11.64846 -11.55165 -11.24464 -11.22337 -11.09353 -10.86569 -10.65181 -10.56775 -10.40300 -10.08558 -9.67387 -9.54987 -9.22677 -8.85545 -8.38672 -6.05774 -4.08881 -0.46190 0.36056 0.53647 1.05646 1.19422 2.76550 3.06257 3.30605 3.38505 3.43431 3.78196 3.86667 3.97259 4.16578 4.31588 4.40151 4.43103 4.43405 4.45946 4.68297 4.77428 5.02276 5.14571 5.22038 5.31166 5.35797 5.52876 5.55513 5.59615 5.79836 5.82433 6.20832 6.27398 6.51359 6.76394 7.45214 7.48947 7.58739 7.68486 7.93371 8.31140 8.97463 9.55838 11.05687 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.012775 B = 0.003351 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.275297 B = 8354.667849 C = 9429.291421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.018 3.982 10 C 0.115 3.885 11 N -1.113 6.113 12 S 2.615 3.385 13 O -0.941 6.941 14 O -0.971 6.971 15 C -0.628 4.628 16 C -0.089 4.089 17 C -0.005 4.005 18 C -0.119 4.119 19 C -0.065 4.065 20 C -0.123 4.123 21 C -0.053 4.053 22 C -0.043 4.043 23 N 0.025 4.975 24 O -0.161 6.161 25 O -0.144 6.144 26 H 0.261 0.739 27 H 0.027 0.973 28 H 0.023 0.977 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.415 0.585 32 H 0.131 0.869 33 H 0.136 0.864 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.150 0.850 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.440 -21.463 10.548 26.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.021 4.021 10 C -0.010 4.010 11 N -0.874 5.874 12 S 2.705 3.295 13 O -0.931 6.931 14 O -0.961 6.961 15 C -0.755 4.755 16 C -0.127 4.127 17 C -0.007 4.007 18 C -0.137 4.137 19 C -0.083 4.083 20 C -0.142 4.142 21 C -0.072 4.072 22 C -0.126 4.126 23 N 0.543 4.457 24 O -0.375 6.375 25 O -0.359 6.359 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.250 0.750 32 H 0.149 0.851 33 H 0.155 0.845 34 H 0.134 0.866 35 H 0.114 0.886 36 H 0.168 0.832 37 H 0.162 0.838 38 H 0.165 0.835 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 12.199 -22.296 10.294 27.420 hybrid contribution 0.454 1.516 0.654 1.712 sum 12.653 -20.780 10.948 26.679 Atomic orbital electron populations 1.69975 1.06088 1.26716 1.50438 1.25006 0.94882 0.99398 0.95055 0.86479 0.80184 0.83439 0.77589 1.19553 1.20889 1.21051 1.21147 0.93284 0.90514 1.51250 0.92155 1.19282 0.94051 0.90590 0.98185 1.21676 0.96109 0.82805 1.00372 1.55556 1.21396 1.22219 1.88227 1.04794 0.75064 0.73374 0.76232 1.93626 1.77046 1.83573 1.38853 1.93565 1.55468 1.59485 1.87625 1.30684 1.17223 1.05605 1.21954 1.20718 0.96835 0.96520 0.98658 1.19678 0.91719 0.92908 0.96390 1.21250 1.01066 0.98774 0.92616 1.21652 0.92689 0.96161 0.97777 1.21245 0.98002 0.96844 0.98085 1.21111 0.98895 0.96098 0.91058 1.21060 0.98586 1.01628 0.91359 1.43614 1.00530 0.99991 1.01592 1.94542 1.08884 1.52144 1.81943 1.94578 1.42332 1.63569 1.35458 0.92920 0.95479 0.95909 0.93314 0.90914 0.75040 0.85070 0.84540 0.86572 0.88585 0.83235 0.83812 0.83521 0.82797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.02 0.44 5.11 -27.89 -0.14 0.30 16 10 C 0.12 2.31 6.07 -4.04 -0.02 2.28 16 11 N -1.11 -18.67 5.89 -10.61 -0.06 -18.73 16 12 S 2.62 39.76 5.46 -107.50 -0.59 39.17 16 13 O -0.94 -17.75 17.50 -57.54 -1.01 -18.76 16 14 O -0.97 -16.11 18.08 -57.54 -1.04 -17.15 16 15 C -0.63 -7.29 5.57 37.16 0.21 -7.08 16 16 C -0.09 -0.91 4.61 -27.88 -0.13 -1.04 16 17 C 0.00 -0.04 5.13 -104.62 -0.54 -0.58 16 18 C -0.12 -0.73 9.67 -39.58 -0.38 -1.11 16 19 C -0.06 -0.29 10.05 -39.58 -0.40 -0.69 16 20 C -0.12 -0.60 10.05 -39.59 -0.40 -1.00 16 21 C -0.05 -0.40 9.56 -39.58 -0.38 -0.78 16 22 C -0.04 -0.45 6.83 -79.95 -0.55 -1.00 16 23 N 0.02 0.34 4.45 33.96 0.15 0.49 16 24 O -0.16 -2.31 18.46 -29.46 -0.54 -2.85 16 25 O -0.14 -2.22 13.58 -29.46 -0.40 -2.62 16 26 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.51 7.69 -51.93 -0.40 1.11 16 31 H 0.42 6.53 8.62 -34.47 -0.30 6.23 16 32 H 0.13 1.17 8.14 -51.92 -0.42 0.75 16 33 H 0.14 1.72 6.65 -51.92 -0.35 1.37 16 34 H 0.12 1.32 5.91 -51.93 -0.31 1.02 16 35 H 0.10 0.74 8.03 -51.93 -0.42 0.32 16 36 H 0.15 0.58 8.05 -52.49 -0.42 0.16 16 37 H 0.14 0.22 8.06 -52.49 -0.42 -0.21 16 38 H 0.15 0.30 8.06 -52.49 -0.42 -0.12 16 39 H 0.15 1.00 7.62 -52.49 -0.40 0.60 16 LS Contribution 352.10 15.07 5.31 5.31 Total: -1.00 -36.32 352.10 -10.27 -46.60 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -4.67 Total: 1.66 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: -3.14 Total: -23.93 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.83 Total: -43.87 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: -2.99 Total: -41.38 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 39.76 SS G_CDS: -0.59 Total: 39.17 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.32 -10.27 -46.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273652158.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.081 kcal (2) G-P(sol) polarization free energy of solvation -36.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds