Wall clock time and date at job start Tue Mar 31 2020 14:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99657 * 2 1 4 4 H 1.48504 * 109.46871 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47150 * 299.99689 * 3 2 1 6 6 H 1.48498 * 109.47440 * 60.00509 * 3 2 1 7 7 C 1.37874 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00028 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00180 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47164 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.47113 * 180.02562 * 10 9 7 12 12 S 1.65598 * 119.99836 * 165.00286 * 11 10 9 13 13 O 1.42105 * 104.27847 * 308.92659 * 12 11 10 14 14 O 1.42103 * 104.27538 * 181.07116 * 12 11 10 15 15 C 1.81397 * 104.45365 * 64.99857 * 12 11 10 16 16 C 1.53002 * 109.47290 * 179.97438 * 15 12 11 17 17 C 1.50700 * 109.46835 * 180.02562 * 16 15 12 18 18 C 1.38256 * 119.99693 * 97.31776 * 17 16 15 19 19 C 1.38219 * 119.99704 * 179.72185 * 18 17 16 20 20 C 1.38259 * 119.99729 * 0.27745 * 19 18 17 21 21 C 1.38206 * 120.00459 * 359.97091 * 20 19 18 22 22 C 1.38214 * 119.99999 * 277.50371 * 17 16 15 23 23 N 1.48017 * 120.00039 * 0.04239 * 22 17 16 24 24 O 1.21804 * 119.99570 * 186.24778 * 23 22 17 25 25 O 1.21799 * 120.00050 * 6.25535 * 23 22 17 26 26 H 0.97001 * 119.99691 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46942 * 60.00186 * 9 7 2 28 28 H 1.09001 * 109.47294 * 300.00259 * 9 7 2 29 29 H 1.08999 * 109.47091 * 60.00214 * 10 9 7 30 30 H 1.08993 * 109.47460 * 300.00267 * 10 9 7 31 31 H 0.96996 * 119.99980 * 344.99511 * 11 10 9 32 32 H 1.09004 * 109.47113 * 60.00039 * 15 12 11 33 33 H 1.09003 * 109.47225 * 300.00149 * 15 12 11 34 34 H 1.09004 * 109.46788 * 60.00113 * 16 15 12 35 35 H 1.08997 * 109.46961 * 300.00154 * 16 15 12 36 36 H 1.07997 * 120.00392 * 359.97438 * 18 17 16 37 37 H 1.07999 * 119.99803 * 180.24851 * 19 18 17 38 38 H 1.08002 * 119.99562 * 179.97438 * 20 19 18 39 39 H 1.08000 * 120.00541 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 16 2.2987 -6.3404 -0.3724 13 8 2.9619 -6.0597 -1.5975 14 8 1.2871 -7.3356 -0.2983 15 6 3.5018 -6.5546 0.9682 16 6 4.3000 -7.8392 0.7367 17 6 5.2990 -8.0174 1.8508 18 6 5.0015 -8.8407 2.9209 19 6 5.9201 -9.0087 3.9399 20 6 7.1341 -8.3489 3.8918 21 6 7.4295 -7.5218 2.8246 22 6 6.5111 -7.3548 1.8047 23 7 6.8275 -6.4694 0.6615 24 8 7.9366 -5.9757 0.5624 25 8 5.9788 -6.2345 -0.1800 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8719 -3.6043 0.8895 30 1 2.8720 -3.6043 -0.8904 31 1 0.5676 -4.9452 0.2160 32 1 2.9763 -6.6205 1.9209 33 1 4.1813 -5.7025 0.9862 34 1 4.8254 -7.7737 -0.2161 35 1 3.6202 -8.6911 0.7190 36 1 4.0530 -9.3558 2.9586 37 1 5.6893 -9.6550 4.7738 38 1 7.8518 -8.4798 4.6883 39 1 8.3776 -7.0061 2.7873 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273652158.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:44 Heat of formation + Delta-G solvation = -80.592896 kcal Electronic energy + Delta-G solvation = -25674.987297 eV Core-core repulsion = 21712.009996 eV Total energy + Delta-G solvation = -3962.977301 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.33365 -40.53589 -38.18795 -37.87394 -37.10914 -36.92728 -35.49769 -34.73265 -32.93001 -31.22658 -31.00178 -27.65363 -26.42626 -25.58615 -23.71282 -22.99327 -22.72190 -20.38043 -20.07581 -19.62134 -18.94413 -18.62590 -18.22538 -17.62905 -17.30472 -16.99529 -16.71563 -16.45791 -15.78231 -15.67796 -15.45779 -14.98621 -14.68088 -14.53322 -14.40815 -13.53674 -13.36647 -13.29329 -13.27584 -13.21298 -13.09845 -12.99505 -12.96265 -12.63639 -12.55318 -12.41223 -12.37067 -12.24244 -11.86136 -11.58329 -11.49268 -11.28863 -10.62661 -10.59026 -10.32087 -10.15055 -8.21699 -6.32290 -1.26856 -0.75311 -0.04300 0.28611 0.41697 1.41350 1.43177 1.55926 1.75543 2.29441 2.42354 2.75647 3.12998 3.19898 3.24884 3.31970 3.53563 3.69976 3.86400 3.97374 4.03381 4.16924 4.20879 4.33798 4.45052 4.51847 4.66423 4.71779 4.84551 4.88781 4.97466 5.04850 5.14376 5.24052 5.49068 5.56948 5.62808 5.80700 6.04977 6.23451 6.43522 6.83434 7.37012 8.90568 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.012775 B = 0.003351 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.275297 B = 8354.667849 C = 9429.291421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.965 3.035 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.020 3.980 10 C 0.130 3.870 11 N -1.116 6.116 12 S 2.623 3.377 13 O -0.987 6.987 14 O -0.984 6.984 15 C -0.602 4.602 16 C -0.097 4.097 17 C -0.020 4.020 18 C -0.115 4.115 19 C -0.046 4.046 20 C -0.111 4.111 21 C -0.063 4.063 22 C -0.070 4.070 23 N 0.028 4.972 24 O -0.183 6.183 25 O -0.191 6.191 26 H 0.264 0.736 27 H -0.002 1.002 28 H 0.012 0.988 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.419 0.581 32 H 0.167 0.833 33 H 0.128 0.872 34 H 0.096 0.904 35 H 0.124 0.876 36 H 0.178 0.822 37 H 0.186 0.814 38 H 0.182 0.818 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.652 -23.291 13.993 30.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.083 0.917 9 C -0.018 4.018 10 C 0.004 3.996 11 N -0.876 5.876 12 S 2.718 3.282 13 O -0.977 6.977 14 O -0.974 6.974 15 C -0.734 4.734 16 C -0.136 4.136 17 C -0.023 4.023 18 C -0.134 4.134 19 C -0.064 4.064 20 C -0.129 4.129 21 C -0.082 4.082 22 C -0.153 4.153 23 N 0.538 4.462 24 O -0.396 6.396 25 O -0.398 6.398 26 H 0.073 0.927 27 H 0.016 0.984 28 H 0.030 0.970 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.254 0.746 32 H 0.185 0.815 33 H 0.146 0.854 34 H 0.114 0.886 35 H 0.142 0.858 36 H 0.195 0.805 37 H 0.203 0.797 38 H 0.200 0.800 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 13.354 -24.102 13.660 30.754 hybrid contribution 0.128 1.891 -0.240 1.911 sum 13.483 -22.211 13.420 29.243 Atomic orbital electron populations 1.70093 1.07686 1.27819 1.51376 1.25923 0.95771 1.03254 0.94590 0.85398 0.79109 0.78772 0.77777 1.18643 1.20621 1.20101 1.21600 0.93824 0.91894 1.50982 0.91698 1.19152 0.94449 0.92071 0.96178 1.21301 0.94950 0.82474 1.00899 1.55424 1.21875 1.21693 1.88598 1.04397 0.74995 0.72375 0.76415 1.93570 1.77613 1.83909 1.42584 1.93541 1.56621 1.59181 1.88105 1.30399 1.15615 1.06561 1.20775 1.20798 0.97585 0.96455 0.98745 1.19703 0.90977 0.94435 0.97144 1.21667 1.02591 0.97553 0.91551 1.22203 0.91427 0.94909 0.97821 1.21733 0.98907 0.94880 0.97408 1.21405 0.98642 0.96922 0.91207 1.21357 1.00473 1.02547 0.90953 1.44156 0.99903 0.99904 1.02201 1.94495 1.09440 1.53146 1.82538 1.94570 1.42528 1.65289 1.37440 0.92674 0.98384 0.96973 0.91049 0.92166 0.74632 0.81481 0.85355 0.88554 0.85809 0.80474 0.79651 0.80022 0.82519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.91 13.29 21.45 0.28 -55.62 16 2 C 0.00 0.17 5.46 84.65 0.46 0.63 16 3 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.54 -30.64 9.11 25.60 0.23 -30.41 16 8 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 9 C 0.02 1.04 5.11 29.85 0.15 1.19 16 10 C 0.13 5.31 6.07 86.38 0.52 5.84 16 11 N -1.12 -38.16 5.89 -187.50 -1.10 -39.26 16 12 S 2.62 80.71 5.46 -56.49 -0.31 80.40 16 13 O -0.99 -39.13 17.50 -127.65 -2.23 -41.36 16 14 O -0.98 -32.28 18.08 -127.65 -2.31 -34.59 16 15 C -0.60 -13.30 5.57 71.98 0.40 -12.90 16 16 C -0.10 -1.89 4.61 29.85 0.14 -1.75 16 17 C -0.02 -0.32 5.13 -19.87 -0.10 -0.42 16 18 C -0.12 -0.87 9.67 22.27 0.22 -0.66 16 19 C -0.05 -0.14 10.05 22.27 0.22 0.08 16 20 C -0.11 -0.56 10.05 22.27 0.22 -0.33 16 21 C -0.06 -0.81 9.56 22.27 0.21 -0.60 16 22 C -0.07 -1.39 6.83 36.38 0.25 -1.14 16 23 N 0.03 0.81 4.45 -46.46 -0.21 0.61 16 24 O -0.18 -5.53 18.46 18.88 0.35 -5.18 16 25 O -0.19 -6.27 13.58 18.89 0.26 -6.01 16 26 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 27 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 28 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.06 2.60 7.69 -2.39 -0.02 2.59 16 31 H 0.42 13.49 8.62 -96.75 -0.83 12.65 16 32 H 0.17 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.13 3.21 6.65 -2.39 -0.02 3.20 16 34 H 0.10 2.29 5.91 -2.39 -0.01 2.28 16 35 H 0.12 1.62 8.03 -2.39 -0.02 1.60 16 36 H 0.18 0.35 8.05 -2.91 -0.02 0.32 16 37 H 0.19 -0.87 8.06 -2.91 -0.02 -0.89 16 38 H 0.18 -0.33 8.06 -2.91 -0.02 -0.36 16 39 H 0.16 1.85 7.62 -2.91 -0.02 1.83 16 Total: -1.00 -83.14 352.10 -0.05 -83.20 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.26 Total: 12.02 kcal Atomic # 6 Polarization: -43.40 SS G_CDS: 2.93 Total: -40.47 kcal Atomic # 7 Polarization: -93.25 SS G_CDS: -1.03 Total: -94.28 kcal Atomic # 8 Polarization: -83.21 SS G_CDS: -3.94 Total: -87.15 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: 80.71 SS G_CDS: -0.31 Total: 80.40 kcal Total: -83.14 -0.05 -83.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273652158.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.604 kcal (2) G-P(sol) polarization free energy of solvation -83.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds