Wall clock time and date at job start Tue Mar 31 2020 16:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47466 * 2 1 4 4 H 1.09002 * 109.46670 * 304.99711 * 3 2 1 5 5 C 1.50700 * 109.47092 * 185.00375 * 3 2 1 6 6 H 1.08009 * 119.99340 * 239.99178 * 5 3 2 7 7 C 1.37874 * 120.00277 * 59.99648 * 5 3 2 8 8 N 1.31511 * 120.00312 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99686 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47264 * 60.00168 * 9 7 5 11 11 H 1.48506 * 109.46668 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47385 * 299.99637 * 9 7 5 13 13 N 1.46501 * 109.47279 * 64.99690 * 3 2 1 14 14 C 1.39666 * 120.00035 * 275.00180 * 13 3 2 15 15 C 1.38938 * 120.07918 * 353.01812 * 14 13 3 16 16 C 1.38074 * 119.92757 * 179.72548 * 15 14 13 17 17 C 1.38309 * 120.07570 * 0.24853 * 16 15 14 18 18 S 1.76201 * 119.92546 * 180.02562 * 17 16 15 19 19 C 1.81408 * 104.44889 * 90.00149 * 18 17 16 20 20 O 1.42096 * 104.27664 * 206.07298 * 18 17 16 21 21 O 1.42102 * 104.27960 * 333.93093 * 18 17 16 22 22 C 1.38267 * 120.14962 * 0.02562 * 17 16 15 23 23 C 1.38125 * 120.07129 * 0.02562 * 22 17 16 24 24 N 1.48009 * 120.03326 * 180.02562 * 23 22 17 25 25 O 1.21795 * 120.00115 * 37.71876 * 24 23 22 26 26 O 1.21800 * 119.99592 * 217.72428 * 24 23 22 27 27 H 1.08997 * 109.47299 * 60.00280 * 1 2 3 28 28 H 1.09000 * 109.47179 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46914 * 300.00298 * 1 2 3 30 30 H 1.08999 * 109.46914 * 239.99702 * 2 1 3 31 31 H 1.09003 * 109.47076 * 120.00092 * 2 1 3 32 32 H 0.96999 * 120.00531 * 180.02562 * 8 7 5 33 33 H 0.96997 * 119.99571 * 95.00666 * 13 3 2 34 34 H 1.08004 * 120.03396 * 359.97438 * 15 14 13 35 35 H 1.07999 * 119.96473 * 180.27577 * 16 15 14 36 36 H 1.08999 * 109.46888 * 60.00036 * 19 18 17 37 37 H 1.08997 * 109.47108 * 180.02562 * 19 18 17 38 38 H 1.09001 * 109.47126 * 300.00016 * 19 18 17 39 39 H 1.08001 * 119.95954 * 179.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 3.5419 1.4441 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8782 -1.2280 8 7 3.4062 0.3372 -2.1734 9 14 6.0049 0.8810 -1.3818 10 1 6.5975 0.1471 -0.2349 11 1 6.3977 0.2174 -2.6510 12 1 6.4995 2.2812 -1.3823 13 7 1.6525 2.0975 1.2518 14 6 0.3910 2.6850 1.3710 15 6 -0.4414 2.7781 0.2626 16 6 -1.6901 3.3544 0.3853 17 6 -2.1106 3.8434 1.6088 18 16 -3.7051 4.5775 1.7611 19 6 -4.7998 3.1967 2.1921 20 8 -3.5758 5.4723 2.8573 21 8 -3.9968 5.0562 0.4552 22 6 -1.2825 3.7576 2.7127 23 6 -0.0317 3.1832 2.5966 24 7 0.8538 3.0913 3.7790 25 8 0.3826 2.8476 4.8754 26 8 2.0539 3.2594 3.6556 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8292 -0.0613 -2.9500 33 1 2.2720 2.1232 1.9977 34 1 -0.1137 2.3964 -0.6932 35 1 -2.3395 3.4230 -0.4750 36 1 -4.4673 2.7480 3.1282 37 1 -5.8197 3.5637 2.3068 38 1 -4.7702 2.4486 1.3999 39 1 -1.6138 4.1409 3.6665 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273811298.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:17 Heat of formation + Delta-G solvation = -46.140203 kcal Electronic energy + Delta-G solvation = -26484.028444 eV Core-core repulsion = 22522.545124 eV Total energy + Delta-G solvation = -3961.483320 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.00325 -39.66615 -37.22612 -36.83967 -36.17107 -36.03620 -33.38952 -32.14142 -31.19629 -30.05742 -29.59452 -27.06313 -26.07646 -23.71480 -22.80721 -22.48558 -20.22577 -19.60027 -18.66822 -18.53078 -17.88045 -17.10938 -16.90013 -16.40310 -16.28824 -15.98349 -15.53665 -14.76212 -14.57408 -14.22382 -13.85803 -13.68685 -13.42421 -13.18792 -12.95752 -12.79906 -12.32111 -12.21352 -12.16608 -11.98769 -11.62278 -11.37677 -11.33051 -11.28324 -11.08827 -10.98063 -10.92963 -10.84310 -10.73454 -10.40729 -10.30782 -9.95160 -9.52058 -9.39116 -8.74057 -7.60922 -6.42528 -4.52596 -0.07524 0.30961 0.91020 1.38978 1.66880 2.74346 3.13290 3.18196 3.20393 3.21617 3.57179 3.79132 3.97032 4.16254 4.40923 4.53538 4.67132 4.77276 4.90546 4.98101 5.16201 5.39104 5.43428 5.53994 5.78208 5.83907 5.91838 5.95547 6.07734 6.35863 6.43992 6.52868 6.62888 6.76461 6.92438 7.33451 7.38970 7.54408 7.74973 7.86323 8.04754 8.51852 9.16058 10.63108 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.016925 B = 0.003773 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.960673 B = 7418.615921 C = 8312.308720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.135 4.135 3 C 0.258 3.742 4 H 0.054 0.946 5 C -0.541 4.541 6 H 0.067 0.933 7 C 0.072 3.928 8 N -0.884 5.884 9 Si 0.907 3.093 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.671 5.671 14 C 0.329 3.671 15 C -0.204 4.204 16 C 0.044 3.956 17 C -0.737 4.737 18 S 2.514 3.486 19 C -0.652 4.652 20 O -0.943 6.943 21 O -0.939 6.939 22 C 0.088 3.912 23 C -0.160 4.160 24 N 0.045 4.955 25 O -0.164 6.164 26 O -0.181 6.181 27 H 0.052 0.948 28 H 0.040 0.960 29 H 0.037 0.963 30 H 0.111 0.889 31 H 0.040 0.960 32 H 0.269 0.731 33 H 0.410 0.590 34 H 0.160 0.840 35 H 0.151 0.849 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.452 1.910 4.738 15.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.174 4.174 3 C 0.157 3.843 4 H 0.071 0.929 5 C -0.579 4.579 6 H 0.085 0.915 7 C -0.132 4.132 8 N -0.521 5.521 9 Si 0.734 3.266 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.199 1.199 13 N -0.288 5.288 14 C 0.204 3.796 15 C -0.227 4.227 16 C 0.023 3.977 17 C -0.828 4.828 18 S 2.694 3.306 19 C -0.802 4.802 20 O -0.940 6.940 21 O -0.936 6.936 22 C 0.067 3.933 23 C -0.251 4.251 24 N 0.561 4.439 25 O -0.381 6.381 26 O -0.389 6.389 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.129 0.871 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.250 0.750 34 H 0.178 0.822 35 H 0.168 0.832 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -14.786 2.548 3.675 15.448 hybrid contribution 1.847 -0.994 0.598 2.181 sum -12.939 1.554 4.273 13.715 Atomic orbital electron populations 1.22113 0.98822 1.00131 1.00175 1.22068 0.92270 0.99353 1.03688 1.19262 0.96123 0.89268 0.79648 0.92862 1.21093 0.89757 1.40057 1.07011 0.91465 1.24847 0.99312 0.94105 0.94953 1.69812 1.35747 1.37112 1.09389 0.86389 0.83849 0.78706 0.77643 1.19879 1.20927 1.19858 1.46816 1.10839 1.51224 1.19893 1.17923 0.86899 0.84547 0.90203 1.21131 0.95098 1.08012 0.98498 1.20818 0.94829 0.86822 0.95202 1.29981 1.24194 1.28694 0.99916 1.04697 0.75021 0.76218 0.74695 1.30258 1.16128 1.20758 1.13042 1.93575 1.85692 1.59696 1.55067 1.93577 1.84250 1.77609 1.38188 1.20234 0.88209 0.86329 0.98505 1.20421 0.95550 1.23715 0.85365 1.43393 1.01393 0.97027 1.02136 1.94488 1.79300 1.50911 1.13429 1.94491 0.98190 1.54228 1.91994 0.92897 0.94107 0.94417 0.87077 0.94156 0.92086 0.74960 0.82221 0.83176 0.84956 0.85250 0.84884 0.82801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 8.32 37.16 0.31 -2.29 16 2 C -0.14 -2.77 5.45 -26.73 -0.15 -2.91 16 3 C 0.26 5.56 2.20 -69.08 -0.15 5.41 16 4 H 0.05 1.20 6.22 -51.93 -0.32 0.88 16 5 C -0.54 -13.22 8.73 -34.44 -0.30 -13.52 16 6 H 0.07 1.66 7.74 -52.48 -0.41 1.25 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -22.09 11.29 55.43 0.63 -21.46 16 9 Si 0.91 19.55 29.54 -169.99 -5.02 14.53 16 10 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 11 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 12 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 13 N -0.67 -13.06 5.08 -53.29 -0.27 -13.33 16 14 C 0.33 5.67 5.17 -83.79 -0.43 5.23 16 15 C -0.20 -3.07 6.95 -39.38 -0.27 -3.34 16 16 C 0.04 0.55 9.46 -39.62 -0.37 0.17 16 17 C -0.74 -8.76 5.66 -39.54 -0.22 -8.99 16 18 S 2.51 23.96 5.80 -107.50 -0.62 23.33 16 19 C -0.65 -3.42 10.80 101.05 1.09 -2.33 16 20 O -0.94 -12.00 17.12 -57.54 -0.98 -12.98 16 21 O -0.94 -11.55 17.12 -57.54 -0.98 -12.54 16 22 C 0.09 1.21 9.08 -39.61 -0.36 0.85 16 23 C -0.16 -2.65 6.51 -79.75 -0.52 -3.17 16 24 N 0.05 0.82 4.33 34.06 0.15 0.96 16 25 O -0.16 -2.89 18.95 -29.46 -0.56 -3.45 16 26 O -0.18 -3.49 16.64 -29.46 -0.49 -3.98 16 27 H 0.05 0.83 6.72 -51.93 -0.35 0.48 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.04 0.61 5.58 -51.93 -0.29 0.32 16 30 H 0.11 2.54 5.95 -51.93 -0.31 2.23 16 31 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 33 H 0.41 8.23 5.89 -40.82 -0.24 7.99 16 34 H 0.16 2.44 4.68 -52.48 -0.25 2.20 16 35 H 0.15 1.43 7.56 -52.49 -0.40 1.03 16 36 H 0.13 0.56 8.14 -51.92 -0.42 0.14 16 37 H 0.13 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.13 0.52 8.14 -51.92 -0.42 0.10 16 39 H 0.15 1.85 7.52 -52.49 -0.39 1.45 16 LS Contribution 337.67 15.07 5.09 5.09 Total: -1.00 -30.12 337.67 -8.75 -38.87 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -4.20 Total: 8.17 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: -1.48 Total: -23.22 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: 0.50 Total: -33.82 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -3.02 Total: -32.95 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Atomic # 16 Polarization: 23.96 SS G_CDS: -0.62 Total: 23.33 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.12 -8.75 -38.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273811298.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.274 kcal (2) G-P(sol) polarization free energy of solvation -30.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds