Wall clock time and date at job start Tue Mar 31 2020 16:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47466 * 2 1 4 4 H 1.09002 * 109.46670 * 304.99711 * 3 2 1 5 5 C 1.50700 * 109.47092 * 185.00375 * 3 2 1 6 6 H 1.08009 * 119.99340 * 239.99178 * 5 3 2 7 7 C 1.37874 * 120.00277 * 59.99648 * 5 3 2 8 8 N 1.31511 * 120.00312 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99686 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47264 * 60.00168 * 9 7 5 11 11 H 1.48506 * 109.46668 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47385 * 299.99637 * 9 7 5 13 13 N 1.46501 * 109.47279 * 64.99690 * 3 2 1 14 14 C 1.39666 * 120.00035 * 275.00180 * 13 3 2 15 15 C 1.38938 * 120.07918 * 353.01812 * 14 13 3 16 16 C 1.38074 * 119.92757 * 179.72548 * 15 14 13 17 17 C 1.38309 * 120.07570 * 0.24853 * 16 15 14 18 18 S 1.76201 * 119.92546 * 180.02562 * 17 16 15 19 19 C 1.81408 * 104.44889 * 90.00149 * 18 17 16 20 20 O 1.42096 * 104.27664 * 206.07298 * 18 17 16 21 21 O 1.42102 * 104.27960 * 333.93093 * 18 17 16 22 22 C 1.38267 * 120.14962 * 0.02562 * 17 16 15 23 23 C 1.38125 * 120.07129 * 0.02562 * 22 17 16 24 24 N 1.48009 * 120.03326 * 180.02562 * 23 22 17 25 25 O 1.21795 * 120.00115 * 37.71876 * 24 23 22 26 26 O 1.21800 * 119.99592 * 217.72428 * 24 23 22 27 27 H 1.08997 * 109.47299 * 60.00280 * 1 2 3 28 28 H 1.09000 * 109.47179 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46914 * 300.00298 * 1 2 3 30 30 H 1.08999 * 109.46914 * 239.99702 * 2 1 3 31 31 H 1.09003 * 109.47076 * 120.00092 * 2 1 3 32 32 H 0.96999 * 120.00531 * 180.02562 * 8 7 5 33 33 H 0.96997 * 119.99571 * 95.00666 * 13 3 2 34 34 H 1.08004 * 120.03396 * 359.97438 * 15 14 13 35 35 H 1.07999 * 119.96473 * 180.27577 * 16 15 14 36 36 H 1.08999 * 109.46888 * 60.00036 * 19 18 17 37 37 H 1.08997 * 109.47108 * 180.02562 * 19 18 17 38 38 H 1.09001 * 109.47126 * 300.00016 * 19 18 17 39 39 H 1.08001 * 119.95954 * 179.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 3.5419 1.4441 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8782 -1.2280 8 7 3.4062 0.3372 -2.1734 9 14 6.0049 0.8810 -1.3818 10 1 6.5975 0.1471 -0.2349 11 1 6.3977 0.2174 -2.6510 12 1 6.4995 2.2812 -1.3823 13 7 1.6525 2.0975 1.2518 14 6 0.3910 2.6850 1.3710 15 6 -0.4414 2.7781 0.2626 16 6 -1.6901 3.3544 0.3853 17 6 -2.1106 3.8434 1.6088 18 16 -3.7051 4.5775 1.7611 19 6 -4.7998 3.1967 2.1921 20 8 -3.5758 5.4723 2.8573 21 8 -3.9968 5.0562 0.4552 22 6 -1.2825 3.7576 2.7127 23 6 -0.0317 3.1832 2.5966 24 7 0.8538 3.0913 3.7790 25 8 0.3826 2.8476 4.8754 26 8 2.0539 3.2594 3.6556 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8292 -0.0613 -2.9500 33 1 2.2720 2.1232 1.9977 34 1 -0.1137 2.3964 -0.6932 35 1 -2.3395 3.4230 -0.4750 36 1 -4.4673 2.7480 3.1282 37 1 -5.8197 3.5637 2.3068 38 1 -4.7702 2.4486 1.3999 39 1 -1.6138 4.1409 3.6665 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273811298.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:16 Heat of formation + Delta-G solvation = -66.382522 kcal Electronic energy + Delta-G solvation = -26484.906217 eV Core-core repulsion = 22522.545124 eV Total energy + Delta-G solvation = -3962.361093 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.37406 -40.93505 -38.24545 -38.08531 -37.60068 -36.91963 -34.99408 -33.56361 -32.56952 -31.27227 -30.16193 -28.65183 -27.41077 -25.29484 -24.15896 -23.70385 -21.67052 -20.87383 -19.92472 -19.66064 -19.20454 -18.57096 -18.09038 -17.66165 -17.31858 -17.06261 -16.74375 -16.26528 -15.86584 -15.54206 -15.17767 -14.56133 -14.53993 -14.10451 -13.88365 -13.84131 -13.69746 -13.35967 -13.27431 -13.08649 -12.95692 -12.92893 -12.81854 -12.78378 -12.39074 -12.36185 -12.30481 -12.12536 -12.12024 -11.81653 -11.68250 -11.46295 -11.12192 -10.69343 -10.55569 -8.97140 -8.29747 -6.44615 -1.02124 -0.80345 -0.21632 0.11709 0.36202 1.39125 1.40452 1.47478 1.90474 2.09131 2.15582 2.40212 3.00920 3.06814 3.15627 3.26591 3.71118 3.83537 3.91332 4.18995 4.23176 4.30875 4.40228 4.42295 4.52857 4.55577 4.74595 4.78512 4.89290 5.07685 5.10487 5.13423 5.20305 5.33885 5.44118 5.52558 5.69009 5.91082 6.08927 6.38243 6.47964 6.67156 7.25923 8.74468 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.016925 B = 0.003773 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.960673 B = 7418.615921 C = 8312.308720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C 0.269 3.731 4 H 0.040 0.960 5 C -0.562 4.562 6 H 0.053 0.947 7 C 0.034 3.966 8 N -0.900 5.900 9 Si 0.958 3.042 10 H -0.274 1.274 11 H -0.277 1.277 12 H -0.276 1.276 13 N -0.691 5.691 14 C 0.311 3.689 15 C -0.215 4.215 16 C 0.060 3.940 17 C -0.722 4.722 18 S 2.524 3.476 19 C -0.624 4.624 20 O -0.977 6.977 21 O -0.967 6.967 22 C 0.083 3.917 23 C -0.171 4.171 24 N 0.046 4.954 25 O -0.142 6.142 26 O -0.230 6.230 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.024 0.976 32 H 0.270 0.730 33 H 0.403 0.597 34 H 0.155 0.845 35 H 0.185 0.815 36 H 0.151 0.849 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.802 1.763 4.894 18.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.058 0.942 5 C -0.600 4.600 6 H 0.071 0.929 7 C -0.168 4.168 8 N -0.537 5.537 9 Si 0.784 3.216 10 H -0.200 1.200 11 H -0.202 1.202 12 H -0.201 1.201 13 N -0.310 5.310 14 C 0.190 3.810 15 C -0.239 4.239 16 C 0.040 3.960 17 C -0.808 4.808 18 S 2.705 3.295 19 C -0.779 4.779 20 O -0.975 6.975 21 O -0.965 6.965 22 C 0.063 3.937 23 C -0.262 4.262 24 N 0.558 4.442 25 O -0.368 6.368 26 O -0.427 6.427 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.043 0.957 32 H 0.080 0.920 33 H 0.242 0.758 34 H 0.173 0.827 35 H 0.202 0.798 36 H 0.170 0.830 37 H 0.175 0.825 38 H 0.175 0.825 39 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -18.028 2.461 3.778 18.583 hybrid contribution 2.565 -0.885 0.634 2.786 sum -15.463 1.576 4.411 16.157 Atomic orbital electron populations 1.21991 0.95698 1.01371 1.01008 1.21890 0.95091 0.98229 1.01558 1.18904 0.94340 0.89808 0.80272 0.94240 1.21401 0.91748 1.40040 1.06836 0.92854 1.25458 1.02563 0.93956 0.94820 1.69895 1.36777 1.37465 1.09575 0.85601 0.80009 0.78376 0.77639 1.19959 1.20161 1.20088 1.46481 1.12112 1.53569 1.18871 1.18170 0.86433 0.85186 0.91191 1.21214 0.96003 1.09058 0.97622 1.21254 0.93817 0.84422 0.96495 1.30578 1.25460 1.25900 0.98899 1.04586 0.74376 0.77102 0.73461 1.30058 1.15185 1.17850 1.14767 1.93537 1.85984 1.62279 1.55656 1.93545 1.84034 1.79219 1.39652 1.20551 0.87143 0.85881 1.00094 1.20665 0.96176 1.24804 0.84526 1.43638 1.01397 0.96607 1.02582 1.94439 1.79047 1.49265 1.14001 1.94504 0.99112 1.56828 1.92276 0.91815 0.92606 0.93732 0.89603 0.95672 0.92046 0.75830 0.82737 0.79778 0.83033 0.82465 0.82468 0.81030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.69 8.32 71.98 0.60 -4.09 16 2 C -0.13 -5.43 5.45 30.59 0.17 -5.26 16 3 C 0.27 12.08 2.20 44.24 0.10 12.17 16 4 H 0.04 1.86 6.22 -2.39 -0.01 1.85 16 5 C -0.56 -28.76 8.73 25.60 0.22 -28.54 16 6 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 7 C 0.03 1.73 5.29 84.65 0.45 2.17 16 8 N -0.90 -46.01 11.29 21.45 0.24 -45.77 16 9 Si 0.96 41.00 29.54 68.60 2.03 43.03 16 10 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 11 H -0.28 -11.42 7.11 99.48 0.71 -10.72 16 12 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 13 N -0.69 -28.15 5.08 -322.51 -1.64 -29.79 16 14 C 0.31 10.79 5.17 38.22 0.20 10.98 16 15 C -0.22 -6.27 6.95 22.40 0.16 -6.11 16 16 C 0.06 1.31 9.46 22.25 0.21 1.52 16 17 C -0.72 -14.97 5.66 22.29 0.13 -14.84 16 18 S 2.52 38.75 5.80 -56.49 -0.33 38.43 16 19 C -0.62 -2.73 10.80 113.37 1.22 -1.51 16 20 O -0.98 -22.23 17.12 -127.65 -2.19 -24.41 16 21 O -0.97 -20.59 17.12 -127.65 -2.19 -22.78 16 22 C 0.08 2.12 9.08 22.25 0.20 2.32 16 23 C -0.17 -5.61 6.51 36.51 0.24 -5.37 16 24 N 0.05 1.66 4.33 -46.16 -0.20 1.46 16 25 O -0.14 -4.92 18.95 18.89 0.36 -4.57 16 26 O -0.23 -9.40 16.64 18.89 0.31 -9.08 16 27 H 0.06 1.92 6.72 -2.39 -0.02 1.91 16 28 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.04 1.38 5.58 -2.39 -0.01 1.37 16 30 H 0.09 4.06 5.95 -2.39 -0.01 4.04 16 31 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 33 H 0.40 17.31 5.89 -92.71 -0.55 16.76 16 34 H 0.16 4.67 4.68 -2.91 -0.01 4.66 16 35 H 0.19 2.75 7.56 -2.91 -0.02 2.73 16 36 H 0.15 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.16 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.16 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.17 3.71 7.52 -2.91 -0.02 3.69 16 Total: -1.00 -68.34 337.67 0.86 -67.48 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.57 Total: 22.55 kcal Atomic # 6 Polarization: -40.43 SS G_CDS: 3.89 Total: -36.55 kcal Atomic # 7 Polarization: -72.50 SS G_CDS: -1.60 Total: -74.10 kcal Atomic # 8 Polarization: -57.14 SS G_CDS: -3.70 Total: -60.84 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Atomic # 16 Polarization: 38.75 SS G_CDS: -0.33 Total: 38.43 kcal Total: -68.34 0.86 -67.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273811298.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.101 kcal (2) G-P(sol) polarization free energy of solvation -68.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds