Wall clock time and date at job start Tue Mar 31 2020 15:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38250 * 120.00009 * 2 1 4 4 C 1.38216 * 120.00091 * 179.83750 * 3 2 1 5 5 C 1.50693 * 120.00424 * 180.20858 * 4 3 2 6 6 C 1.38262 * 119.99410 * 0.39705 * 4 3 2 7 7 S 1.76204 * 119.99458 * 179.81000 * 6 4 3 8 8 O 1.42090 * 106.40287 * 309.59797 * 7 6 4 9 9 O 1.42104 * 106.40018 * 176.67769 * 7 6 4 10 10 N 1.65599 * 107.21729 * 63.13899 * 7 6 4 11 11 C 1.46501 * 120.00169 * 64.23619 * 10 7 6 12 12 C 1.52994 * 109.47506 * 161.82512 * 11 10 7 13 13 C 1.50698 * 109.47271 * 179.97438 * 12 11 10 14 14 H 1.07993 * 120.00441 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99872 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00383 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 119.99933 * 180.02562 * 15 13 12 18 18 H 1.48491 * 109.46780 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47078 * 120.00140 * 17 15 13 20 20 H 1.48503 * 109.46774 * 239.99795 * 17 15 13 21 21 C 1.38204 * 120.00015 * 359.53898 * 6 4 3 22 22 C 1.38214 * 119.99511 * 179.97438 * 2 1 3 23 23 N 1.48016 * 120.00475 * 0.02562 * 22 2 1 24 24 O 1.21794 * 120.00110 * 174.02902 * 23 22 2 25 25 O 1.21806 * 119.99652 * 354.02009 * 23 22 2 26 26 H 1.09006 * 109.46764 * 262.55554 * 1 2 3 27 27 H 1.09004 * 109.46823 * 22.55148 * 1 2 3 28 28 H 1.08995 * 109.47421 * 142.55495 * 1 2 3 29 29 H 1.08004 * 120.00156 * 0.02562 * 3 2 1 30 30 H 1.09005 * 109.47467 * 273.17182 * 5 4 3 31 31 H 1.09002 * 109.47292 * 33.16845 * 5 4 3 32 32 H 1.08994 * 109.47538 * 153.16968 * 5 4 3 33 33 H 0.96998 * 120.00257 * 243.95364 * 10 7 6 34 34 H 1.09001 * 109.47032 * 281.82340 * 11 10 7 35 35 H 1.08998 * 109.47368 * 41.82141 * 11 10 7 36 36 H 1.09001 * 109.46834 * 299.99949 * 12 11 10 37 37 H 1.08998 * 109.47110 * 59.99470 * 12 11 10 38 38 H 0.96999 * 120.00896 * 179.97438 * 16 15 13 39 39 H 1.08005 * 119.99901 * 180.25194 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0034 5 6 4.3340 2.5023 0.0081 6 6 4.2717 -0.0001 -0.0015 7 16 6.0337 -0.0001 -0.0022 8 8 6.4345 0.8728 -1.0493 9 8 6.4350 -1.3613 0.0714 10 7 6.5244 0.7092 1.4114 11 6 6.2151 0.0748 2.6952 12 6 7.1304 0.6458 3.7800 13 6 6.8117 -0.0063 5.1007 14 1 6.0344 -0.7536 5.1603 15 6 7.5133 0.3503 6.2327 16 7 8.4604 1.2600 6.1602 17 14 7.1188 -0.4586 7.8697 18 1 6.0205 -1.4406 7.6845 19 1 8.3260 -1.1559 8.3810 20 1 6.6958 0.5784 8.8450 21 6 3.5806 -1.1970 -0.0002 22 6 2.1980 -1.1970 0.0005 23 7 1.4579 -2.4789 0.0005 24 8 2.0620 -3.5308 -0.1087 25 8 0.2448 -2.4816 0.1100 26 1 -0.3633 -0.1332 1.0191 27 1 -0.3633 0.9491 -0.3941 28 1 -0.3634 -0.8158 -0.6248 29 1 1.6583 2.1326 0.0004 30 1 4.4690 2.8477 -1.0169 31 1 3.7693 3.2459 0.5707 32 1 5.3086 2.3574 0.4740 33 1 7.0203 1.5425 1.3893 34 1 5.1753 0.2717 2.9566 35 1 6.3724 -1.0009 2.6163 36 1 8.1702 0.4489 3.5187 37 1 6.9731 1.7215 3.8590 38 1 8.9538 1.5112 6.9566 39 1 4.1206 -2.1323 0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277054170.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:35 Heat of formation + Delta-G solvation = -59.023930 kcal Electronic energy + Delta-G solvation = -26039.362356 eV Core-core repulsion = 22077.320356 eV Total energy + Delta-G solvation = -3962.042000 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.46287 -40.11412 -37.36079 -36.86228 -35.91683 -35.71703 -34.37795 -33.02785 -32.83060 -29.38276 -28.98111 -28.12097 -25.33047 -24.63235 -23.21486 -22.00489 -21.32401 -20.21850 -19.05714 -18.83578 -17.81579 -17.50231 -16.77059 -16.55228 -16.35628 -15.75922 -15.46643 -14.81409 -14.64388 -14.57163 -14.22339 -13.95100 -13.65500 -13.32326 -12.93612 -12.72564 -12.65166 -12.52351 -12.48201 -12.13625 -11.99730 -11.95195 -11.58316 -11.43071 -11.34742 -11.27132 -11.15957 -10.87906 -10.69735 -10.57102 -9.91665 -9.74689 -9.71976 -9.35726 -9.13593 -8.50216 -6.16546 -4.20413 -0.44946 0.10058 0.36106 1.01864 1.17285 2.55211 3.01662 3.23045 3.31556 3.35480 3.59469 3.81971 3.91884 4.05407 4.22284 4.34417 4.41818 4.66992 4.84798 4.90259 5.00825 5.09614 5.13648 5.16699 5.20768 5.38008 5.50471 5.53434 5.61099 5.63273 5.84524 6.00998 6.26028 6.27684 6.55612 7.15557 7.44002 7.47720 7.52945 7.81070 8.17896 8.85415 9.45127 10.94717 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.011535 B = 0.003841 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.871637 B = 7288.245082 C = 8293.124012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.036 3.964 3 C -0.148 4.148 4 C 0.077 3.923 5 C -0.153 4.153 6 C -0.688 4.688 7 S 2.696 3.304 8 O -0.958 6.958 9 O -0.949 6.949 10 N -1.107 6.107 11 C 0.116 3.884 12 C 0.019 3.981 13 C -0.526 4.526 14 H 0.059 0.941 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.895 3.105 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.283 1.283 21 C 0.056 3.944 22 C -0.080 4.080 23 N 0.035 4.965 24 O -0.159 6.159 25 O -0.160 6.160 26 H 0.097 0.903 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.155 0.845 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.419 0.581 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.028 0.972 37 H 0.025 0.975 38 H 0.262 0.738 39 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.550 3.317 -14.258 19.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.034 3.966 3 C -0.167 4.167 4 C 0.076 3.924 5 C -0.209 4.209 6 C -0.772 4.772 7 S 2.781 3.219 8 O -0.948 6.948 9 O -0.939 6.939 10 N -0.871 5.871 11 C -0.008 4.008 12 C -0.020 4.020 13 C -0.565 4.565 14 H 0.077 0.923 15 C -0.141 4.141 16 N -0.530 5.530 17 Si 0.723 3.277 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.209 1.209 21 C 0.036 3.964 22 C -0.164 4.164 23 N 0.553 4.447 24 O -0.374 6.374 25 O -0.374 6.374 26 H 0.115 0.885 27 H 0.097 0.903 28 H 0.121 0.879 29 H 0.173 0.827 30 H 0.125 0.875 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.255 0.745 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.046 0.954 37 H 0.043 0.957 38 H 0.072 0.928 39 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -12.698 3.498 -14.803 19.815 hybrid contribution -0.844 -0.249 1.331 1.596 sum -13.542 3.249 -13.472 19.376 Atomic orbital electron populations 1.21437 0.87965 1.04877 1.05222 1.20129 0.98282 0.90492 0.87669 1.21137 0.93336 0.97579 1.04646 1.20006 0.94218 0.94326 0.83900 1.21442 1.00881 0.93255 1.05318 1.31300 1.29205 0.97281 1.19397 1.02085 0.72835 0.74015 0.72964 1.93601 1.80635 1.66560 1.53956 1.93604 1.79403 1.34590 1.86318 1.55561 1.70252 1.39152 1.22091 1.21734 1.00098 0.97262 0.81747 1.19291 0.94709 0.96724 0.91300 1.21096 1.19699 1.23078 0.92630 0.92251 1.24985 0.94847 0.95005 0.99291 1.69953 1.22590 1.31073 1.29402 0.86485 0.78432 0.79334 0.83479 1.19623 1.20809 1.20945 1.20803 0.91408 0.99535 0.84647 1.20957 0.92459 0.83798 1.19181 1.43431 1.01055 1.02582 0.97678 1.94587 1.70054 1.19539 1.53232 1.94455 0.96089 1.93698 1.53110 0.88502 0.90321 0.87923 0.82690 0.87450 0.88651 0.90081 0.74468 0.92992 0.90993 0.95369 0.95709 0.92796 0.80958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.67 36.01 0.31 -0.73 16 2 C 0.04 0.36 5.88 -104.62 -0.62 -0.26 16 3 C -0.15 -1.28 9.34 -39.58 -0.37 -1.65 16 4 C 0.08 0.79 5.88 -104.62 -0.61 0.18 16 5 C -0.15 -1.29 8.88 36.00 0.32 -0.97 16 6 C -0.69 -8.64 5.86 -39.59 -0.23 -8.87 16 7 S 2.70 38.43 4.92 -107.50 -0.53 37.90 16 8 O -0.96 -14.29 16.57 -57.17 -0.95 -15.24 16 9 O -0.95 -16.40 16.43 -57.17 -0.94 -17.34 16 10 N -1.11 -16.20 4.76 -10.62 -0.05 -16.25 16 11 C 0.12 2.10 6.18 -4.04 -0.02 2.08 16 12 C 0.02 0.43 5.13 -27.89 -0.14 0.29 16 13 C -0.53 -13.84 9.11 -34.44 -0.31 -14.15 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -25.26 13.29 55.43 0.74 -24.52 16 17 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 C 0.06 0.74 9.06 -39.59 -0.36 0.38 16 22 C -0.08 -1.00 6.83 -79.95 -0.55 -1.55 16 23 N 0.04 0.49 4.45 33.96 0.15 0.64 16 24 O -0.16 -2.42 18.46 -29.46 -0.54 -2.96 16 25 O -0.16 -2.11 15.37 -29.46 -0.45 -2.56 16 26 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 0.39 8.03 -51.93 -0.42 -0.03 16 28 H 0.10 0.85 5.89 -51.93 -0.31 0.55 16 29 H 0.16 0.80 8.05 -52.48 -0.42 0.38 16 30 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.09 0.57 8.11 -51.93 -0.42 0.15 16 32 H 0.08 0.76 4.82 -51.93 -0.25 0.51 16 33 H 0.42 5.41 8.23 -34.47 -0.28 5.12 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.34 7.71 -51.93 -0.40 0.94 16 36 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.17 2.25 6.90 -52.48 -0.36 1.89 16 LS Contribution 345.89 15.07 5.21 5.21 Total: -1.00 -32.67 345.89 -9.59 -42.26 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -4.52 Total: 0.85 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: -2.68 Total: -23.70 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.84 Total: -40.13 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -2.88 Total: -38.10 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 38.43 SS G_CDS: -0.53 Total: 37.90 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.67 -9.59 -42.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277054170.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.765 kcal (2) G-P(sol) polarization free energy of solvation -32.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds