Wall clock time and date at job start Tue Mar 31 2020 15:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38250 * 120.00009 * 2 1 4 4 C 1.38216 * 120.00091 * 179.83750 * 3 2 1 5 5 C 1.50693 * 120.00424 * 180.20858 * 4 3 2 6 6 C 1.38262 * 119.99410 * 0.39705 * 4 3 2 7 7 S 1.76204 * 119.99458 * 179.81000 * 6 4 3 8 8 O 1.42090 * 106.40287 * 309.59797 * 7 6 4 9 9 O 1.42104 * 106.40018 * 176.67769 * 7 6 4 10 10 N 1.65599 * 107.21729 * 63.13899 * 7 6 4 11 11 C 1.46501 * 120.00169 * 64.23619 * 10 7 6 12 12 C 1.52994 * 109.47506 * 161.82512 * 11 10 7 13 13 C 1.50698 * 109.47271 * 179.97438 * 12 11 10 14 14 H 1.07993 * 120.00441 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99872 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00383 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 119.99933 * 180.02562 * 15 13 12 18 18 H 1.48491 * 109.46780 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47078 * 120.00140 * 17 15 13 20 20 H 1.48503 * 109.46774 * 239.99795 * 17 15 13 21 21 C 1.38204 * 120.00015 * 359.53898 * 6 4 3 22 22 C 1.38214 * 119.99511 * 179.97438 * 2 1 3 23 23 N 1.48016 * 120.00475 * 0.02562 * 22 2 1 24 24 O 1.21794 * 120.00110 * 174.02902 * 23 22 2 25 25 O 1.21806 * 119.99652 * 354.02009 * 23 22 2 26 26 H 1.09006 * 109.46764 * 262.55554 * 1 2 3 27 27 H 1.09004 * 109.46823 * 22.55148 * 1 2 3 28 28 H 1.08995 * 109.47421 * 142.55495 * 1 2 3 29 29 H 1.08004 * 120.00156 * 0.02562 * 3 2 1 30 30 H 1.09005 * 109.47467 * 273.17182 * 5 4 3 31 31 H 1.09002 * 109.47292 * 33.16845 * 5 4 3 32 32 H 1.08994 * 109.47538 * 153.16968 * 5 4 3 33 33 H 0.96998 * 120.00257 * 243.95364 * 10 7 6 34 34 H 1.09001 * 109.47032 * 281.82340 * 11 10 7 35 35 H 1.08998 * 109.47368 * 41.82141 * 11 10 7 36 36 H 1.09001 * 109.46834 * 299.99949 * 12 11 10 37 37 H 1.08998 * 109.47110 * 59.99470 * 12 11 10 38 38 H 0.96999 * 120.00896 * 179.97438 * 16 15 13 39 39 H 1.08005 * 119.99901 * 180.25194 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0034 5 6 4.3340 2.5023 0.0081 6 6 4.2717 -0.0001 -0.0015 7 16 6.0337 -0.0001 -0.0022 8 8 6.4345 0.8728 -1.0493 9 8 6.4350 -1.3613 0.0714 10 7 6.5244 0.7092 1.4114 11 6 6.2151 0.0748 2.6952 12 6 7.1304 0.6458 3.7800 13 6 6.8117 -0.0063 5.1007 14 1 6.0344 -0.7536 5.1603 15 6 7.5133 0.3503 6.2327 16 7 8.4604 1.2600 6.1602 17 14 7.1188 -0.4586 7.8697 18 1 6.0205 -1.4406 7.6845 19 1 8.3260 -1.1559 8.3810 20 1 6.6958 0.5784 8.8450 21 6 3.5806 -1.1970 -0.0002 22 6 2.1980 -1.1970 0.0005 23 7 1.4579 -2.4789 0.0005 24 8 2.0620 -3.5308 -0.1087 25 8 0.2448 -2.4816 0.1100 26 1 -0.3633 -0.1332 1.0191 27 1 -0.3633 0.9491 -0.3941 28 1 -0.3634 -0.8158 -0.6248 29 1 1.6583 2.1326 0.0004 30 1 4.4690 2.8477 -1.0169 31 1 3.7693 3.2459 0.5707 32 1 5.3086 2.3574 0.4740 33 1 7.0203 1.5425 1.3893 34 1 5.1753 0.2717 2.9566 35 1 6.3724 -1.0009 2.6163 36 1 8.1702 0.4489 3.5187 37 1 6.9731 1.7215 3.8590 38 1 8.9538 1.5112 6.9566 39 1 4.1206 -2.1323 0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277054170.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:34 Heat of formation + Delta-G solvation = -80.590954 kcal Electronic energy + Delta-G solvation = -26040.297573 eV Core-core repulsion = 22077.320356 eV Total energy + Delta-G solvation = -3962.977217 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.48327 -40.96713 -38.59460 -37.90664 -37.20274 -37.14791 -35.24144 -34.73850 -33.83131 -31.09434 -29.90688 -28.77762 -26.48352 -26.26040 -24.05428 -23.06522 -22.83210 -21.28998 -20.19589 -19.90407 -18.90235 -18.79017 -18.26510 -17.73762 -17.58093 -16.68502 -16.58528 -16.45608 -15.78313 -15.54522 -15.34794 -15.25645 -14.46618 -14.30147 -13.98463 -13.68590 -13.56512 -13.45068 -13.42966 -13.38401 -13.31262 -13.23759 -13.06772 -13.03125 -12.62177 -12.48726 -12.41499 -12.38698 -12.15519 -11.78606 -11.55148 -11.32068 -10.77780 -10.65971 -10.51348 -10.39864 -8.22572 -6.32464 -1.38425 -0.93252 -0.67283 0.07714 0.20725 1.40478 1.43078 1.54185 1.64556 1.91096 2.41071 2.47353 2.99994 3.11041 3.13008 3.23820 3.33403 3.55528 3.73974 4.09668 4.13493 4.18097 4.23078 4.31671 4.47390 4.58861 4.60734 4.74888 4.80684 4.86664 4.90378 4.91796 4.96156 5.14499 5.39034 5.48201 5.62415 5.79487 5.97127 6.20186 6.40800 6.83112 7.37014 8.89290 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.011535 B = 0.003841 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.871637 B = 7288.245082 C = 8293.124012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.040 3.960 3 C -0.133 4.133 4 C 0.077 3.923 5 C -0.161 4.161 6 C -0.697 4.697 7 S 2.713 3.287 8 O -0.963 6.963 9 O -0.987 6.987 10 N -1.103 6.103 11 C 0.132 3.868 12 C 0.021 3.979 13 C -0.544 4.544 14 H 0.063 0.937 15 C 0.008 3.992 16 N -0.927 5.927 17 Si 0.959 3.041 18 H -0.265 1.265 19 H -0.282 1.282 20 H -0.277 1.277 21 C 0.040 3.960 22 C -0.097 4.097 23 N 0.035 4.965 24 O -0.220 6.220 25 O -0.128 6.128 26 H 0.104 0.896 27 H 0.115 0.885 28 H 0.093 0.907 29 H 0.203 0.797 30 H 0.121 0.879 31 H 0.128 0.872 32 H 0.067 0.933 33 H 0.427 0.573 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.002 0.998 37 H 0.017 0.983 38 H 0.264 0.736 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.195 5.354 -14.236 22.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.039 3.961 3 C -0.151 4.151 4 C 0.076 3.924 5 C -0.216 4.216 6 C -0.784 4.784 7 S 2.803 3.197 8 O -0.953 6.953 9 O -0.977 6.977 10 N -0.866 5.866 11 C 0.007 3.993 12 C -0.018 4.018 13 C -0.583 4.583 14 H 0.081 0.919 15 C -0.191 4.191 16 N -0.567 5.567 17 Si 0.784 3.216 18 H -0.189 1.189 19 H -0.208 1.208 20 H -0.202 1.202 21 C 0.019 3.981 22 C -0.182 4.182 23 N 0.549 4.451 24 O -0.420 6.420 25 O -0.353 6.353 26 H 0.122 0.878 27 H 0.133 0.867 28 H 0.111 0.889 29 H 0.220 0.780 30 H 0.140 0.860 31 H 0.146 0.854 32 H 0.086 0.914 33 H 0.265 0.735 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.021 0.979 37 H 0.035 0.965 38 H 0.073 0.927 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -15.200 5.456 -14.803 21.907 hybrid contribution -0.161 -0.747 1.260 1.474 sum -15.362 4.708 -13.543 21.013 Atomic orbital electron populations 1.21553 0.85805 1.06590 1.05563 1.20599 0.99815 0.89681 0.86032 1.21654 0.92522 0.98746 1.02180 1.20386 0.95346 0.94028 0.82672 1.21637 1.00495 0.92907 1.06609 1.30859 1.27442 0.98323 1.21749 1.01235 0.73379 0.72801 0.72334 1.93586 1.81459 1.66495 1.53783 1.93559 1.80890 1.36608 1.86642 1.55328 1.71029 1.39275 1.20980 1.21328 0.99789 0.96537 0.81688 1.19155 0.94304 0.96276 0.92049 1.21561 1.19564 1.23053 0.94082 0.91917 1.25819 0.94763 0.95583 1.02895 1.70060 1.23688 1.32506 1.30418 0.85489 0.78260 0.78547 0.79305 1.18859 1.20757 1.20215 1.20745 0.92100 0.99406 0.85826 1.21140 0.92335 0.83855 1.20861 1.43655 1.01112 1.03002 0.97330 1.94602 1.70278 1.20537 1.56606 1.94410 0.96229 1.93812 1.50813 0.87782 0.86674 0.88901 0.77957 0.86049 0.85407 0.91408 0.73520 0.91182 0.91963 0.97924 0.96451 0.92668 0.82415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.67 71.24 0.62 -0.89 16 2 C 0.04 0.68 5.88 -19.87 -0.12 0.56 16 3 C -0.13 -1.69 9.34 22.27 0.21 -1.48 16 4 C 0.08 1.36 5.88 -19.87 -0.12 1.24 16 5 C -0.16 -2.13 8.88 71.23 0.63 -1.50 16 6 C -0.70 -16.91 5.86 22.27 0.13 -16.78 16 7 S 2.71 77.85 4.92 -56.49 -0.28 77.57 16 8 O -0.96 -28.26 16.57 -128.00 -2.12 -30.38 16 9 O -0.99 -35.60 16.43 -128.00 -2.10 -37.71 16 10 N -1.10 -32.22 4.76 -187.50 -0.89 -33.11 16 11 C 0.13 4.81 6.18 86.38 0.53 5.34 16 12 C 0.02 0.99 5.13 29.85 0.15 1.14 16 13 C -0.54 -28.75 9.11 25.60 0.23 -28.51 16 14 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 15 C 0.01 0.44 5.46 84.65 0.46 0.91 16 16 N -0.93 -53.08 13.29 21.45 0.28 -52.80 16 17 Si 0.96 42.38 29.54 68.60 2.03 44.40 16 18 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 19 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 20 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 21 C 0.04 1.06 9.06 22.27 0.20 1.26 16 22 C -0.10 -2.38 6.83 36.37 0.25 -2.13 16 23 N 0.04 0.98 4.45 -46.47 -0.21 0.77 16 24 O -0.22 -7.12 18.46 18.89 0.35 -6.77 16 25 O -0.13 -3.23 15.37 18.88 0.29 -2.94 16 26 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 27 H 0.11 0.45 8.03 -2.39 -0.02 0.43 16 28 H 0.09 1.25 5.89 -2.39 -0.01 1.23 16 29 H 0.20 0.66 8.05 -2.91 -0.02 0.63 16 30 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.13 0.88 8.11 -2.39 -0.02 0.86 16 32 H 0.07 1.11 4.82 -2.39 -0.01 1.10 16 33 H 0.43 10.97 8.23 -96.75 -0.80 10.17 16 34 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.06 2.38 7.71 -2.39 -0.02 2.36 16 36 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 39 H 0.16 4.54 6.90 -2.91 -0.02 4.52 16 Total: -1.00 -72.46 345.89 0.84 -71.62 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.31 Total: 10.19 kcal Atomic # 6 Polarization: -44.04 SS G_CDS: 3.19 Total: -40.85 kcal Atomic # 7 Polarization: -84.32 SS G_CDS: -0.82 Total: -85.13 kcal Atomic # 8 Polarization: -74.21 SS G_CDS: -3.58 Total: -77.80 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Atomic # 16 Polarization: 77.85 SS G_CDS: -0.28 Total: 77.57 kcal Total: -72.46 0.84 -71.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277054170.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.973 kcal (2) G-P(sol) polarization free energy of solvation -72.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds