Wall clock time and date at job start Tue Mar 31 2020 16:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46995 * 2 1 4 4 H 1.09005 * 109.46990 * 304.99869 * 3 2 1 5 5 C 1.50701 * 109.47238 * 185.00122 * 3 2 1 6 6 H 1.08004 * 119.99973 * 239.99765 * 5 3 2 7 7 C 1.37878 * 120.00188 * 59.99533 * 5 3 2 8 8 N 1.31520 * 119.99953 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00343 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46838 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47330 * 120.00097 * 9 7 5 12 12 H 1.48498 * 109.47134 * 240.00537 * 9 7 5 13 13 N 1.46499 * 109.47493 * 64.99692 * 3 2 1 14 14 C 1.39676 * 120.00261 * 275.00623 * 13 3 2 15 15 C 1.38926 * 120.07182 * 359.97438 * 14 13 3 16 16 C 1.38089 * 119.92422 * 179.97438 * 15 14 13 17 17 C 1.38301 * 120.07155 * 0.28052 * 16 15 14 18 18 N 1.48002 * 119.92513 * 179.69947 * 17 16 15 19 19 O 1.21807 * 119.99870 * 359.97438 * 18 17 16 20 20 O 1.21805 * 120.00378 * 180.02562 * 18 17 16 21 21 C 1.38266 * 120.15343 * 359.44513 * 17 16 15 22 22 C 1.38134 * 120.07086 * 0.55323 * 21 17 16 23 23 S 1.76199 * 120.03761 * 179.69991 * 22 21 17 24 24 C 1.81403 * 104.44511 * 115.02051 * 23 22 21 25 25 O 1.42096 * 104.27766 * 231.09127 * 23 22 21 26 26 O 1.42101 * 104.27411 * 358.95322 * 23 22 21 27 27 H 1.09000 * 109.47317 * 300.00277 * 1 2 3 28 28 H 1.09000 * 109.47302 * 60.00339 * 1 2 3 29 29 H 1.08998 * 109.47126 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47525 * 240.00235 * 2 1 3 31 31 H 1.09000 * 109.47302 * 119.99661 * 2 1 3 32 32 H 0.96995 * 119.99838 * 179.97438 * 8 7 5 33 33 H 0.97003 * 119.99498 * 94.99685 * 13 3 2 34 34 H 1.08000 * 120.03920 * 359.96114 * 15 14 13 35 35 H 1.08002 * 119.96096 * 179.97438 * 16 15 14 36 36 H 1.07994 * 119.96701 * 180.27471 * 21 17 16 37 37 H 1.08993 * 109.47200 * 60.00340 * 24 23 22 38 38 H 1.08999 * 109.46810 * 179.97438 * 24 23 22 39 39 H 1.08996 * 109.47148 * 299.99982 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8891 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8801 -1.3812 10 1 6.5988 1.5444 -0.1931 11 1 6.4962 -0.5189 -1.4627 12 1 6.3999 1.6158 -2.6092 13 7 1.6524 2.0976 1.2517 14 6 0.3908 2.6850 1.3711 15 6 -0.4975 2.6495 0.3035 16 6 -1.7442 3.2307 0.4250 17 6 -2.1066 3.8529 1.6058 18 7 -3.4411 4.4806 1.7302 19 8 -4.2186 4.4494 0.7931 20 8 -3.7617 5.0293 2.7694 21 6 -1.2272 3.8852 2.6722 22 6 0.0215 3.3056 2.5574 23 16 1.1445 3.3542 3.9143 24 6 1.3451 1.6174 4.3981 25 8 2.3493 3.8581 3.3541 26 8 0.4469 4.0749 4.9209 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8293 -0.0604 -2.9502 33 1 2.2719 2.1232 1.9977 34 1 -0.2133 2.1679 -0.6205 35 1 -2.4351 3.2038 -0.4047 36 1 -1.5150 4.3679 3.5944 37 1 1.7460 1.0503 3.5582 38 1 2.0327 1.5523 5.2413 39 1 0.3774 1.2062 4.6853 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302786347.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:34 Heat of formation + Delta-G solvation = -41.911002 kcal Electronic energy + Delta-G solvation = -26791.245725 eV Core-core repulsion = 22829.945797 eV Total energy + Delta-G solvation = -3961.299928 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.88685 -39.94022 -37.40008 -36.52121 -36.28846 -36.04472 -33.52669 -32.18923 -31.07190 -30.27586 -29.70662 -27.36853 -25.31751 -23.87673 -23.36102 -22.23614 -20.35318 -19.59757 -18.66287 -18.52693 -17.89117 -17.26255 -16.62098 -16.46360 -16.39203 -16.13543 -15.37553 -14.84017 -14.62665 -14.41023 -13.97472 -13.47928 -13.32784 -13.30634 -12.98443 -12.75815 -12.34446 -12.26087 -12.15722 -12.02334 -11.68466 -11.33760 -11.31165 -11.18253 -11.17432 -11.00083 -10.91771 -10.87011 -10.75987 -10.45237 -10.32543 -10.00401 -9.61709 -9.43273 -8.79684 -7.69925 -6.48021 -4.58292 -0.09099 0.22243 0.74263 1.65144 1.72722 2.70601 3.05816 3.15367 3.17711 3.21859 3.44708 3.69604 4.01044 4.10938 4.45198 4.58919 4.68598 4.76597 4.85639 5.00883 5.11905 5.36970 5.46354 5.56585 5.74137 5.77516 5.85034 5.85667 6.01874 6.23647 6.39078 6.49113 6.64260 6.70564 6.84520 7.23617 7.31730 7.40561 7.68648 7.91004 7.93121 8.46647 9.10965 10.57635 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.013781 B = 0.004560 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.333454 B = 6138.223989 C = 7467.732753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.137 4.137 3 C 0.258 3.742 4 H 0.055 0.945 5 C -0.542 4.542 6 H 0.070 0.930 7 C 0.072 3.928 8 N -0.882 5.882 9 Si 0.905 3.095 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.280 1.280 13 N -0.682 5.682 14 C 0.353 3.647 15 C -0.197 4.197 16 C 0.018 3.982 17 C -0.140 4.140 18 N 0.049 4.951 19 O -0.184 6.184 20 O -0.185 6.185 21 C 0.096 3.904 22 C -0.760 4.760 23 S 2.501 3.499 24 C -0.658 4.658 25 O -0.926 6.926 26 O -0.938 6.938 27 H 0.042 0.958 28 H 0.053 0.947 29 H 0.041 0.959 30 H 0.112 0.888 31 H 0.042 0.958 32 H 0.269 0.731 33 H 0.397 0.603 34 H 0.166 0.834 35 H 0.152 0.848 36 H 0.165 0.835 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.124 -0.919 7.870 9.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.175 4.175 3 C 0.157 3.843 4 H 0.073 0.927 5 C -0.580 4.580 6 H 0.088 0.912 7 C -0.133 4.133 8 N -0.519 5.519 9 Si 0.732 3.268 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.206 1.206 13 N -0.298 5.298 14 C 0.230 3.770 15 C -0.220 4.220 16 C -0.003 4.003 17 C -0.228 4.228 18 N 0.561 4.439 19 O -0.395 6.395 20 O -0.396 6.396 21 C 0.076 3.924 22 C -0.853 4.853 23 S 2.679 3.321 24 C -0.808 4.808 25 O -0.923 6.923 26 O -0.935 6.935 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.130 0.870 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.235 0.765 34 H 0.183 0.817 35 H 0.170 0.830 36 H 0.182 0.818 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.947 -0.729 7.759 8.736 hybrid contribution 0.389 -0.589 -0.371 0.797 sum -3.558 -1.318 7.388 8.305 Atomic orbital electron populations 1.22283 0.98816 1.00308 1.00321 1.22102 0.92232 0.99316 1.03871 1.19283 0.96231 0.89282 0.79509 0.92724 1.21180 0.89700 1.39902 1.07211 0.91194 1.24854 0.99295 0.94128 0.94978 1.69830 1.35599 1.37132 1.09357 0.86305 0.83895 0.77993 0.78570 1.19389 1.20652 1.20573 1.46735 1.10607 1.52748 1.19690 1.17749 0.85746 0.82477 0.91078 1.21272 0.93128 1.06855 1.00779 1.20850 0.95874 0.88728 0.94843 1.20662 0.86147 1.15703 1.00270 1.43454 1.02475 0.98229 0.99761 1.94492 1.48288 1.64892 1.31859 1.94508 1.81812 1.44913 1.18377 1.20354 0.88277 0.86587 0.97207 1.29796 1.14058 1.24173 1.17268 1.05182 0.74665 0.77751 0.74483 1.30327 1.12507 1.24832 1.13125 1.93649 1.44518 1.76546 1.77541 1.93564 1.73761 1.68536 1.57630 0.93916 0.92793 0.94040 0.87024 0.93947 0.92146 0.76490 0.81655 0.83038 0.81779 0.84802 0.84502 0.84514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 8.22 37.16 0.31 -2.15 16 2 C -0.14 -2.53 5.45 -26.73 -0.15 -2.68 16 3 C 0.26 5.13 2.20 -69.08 -0.15 4.98 16 4 H 0.06 1.17 6.48 -51.93 -0.34 0.84 16 5 C -0.54 -12.48 8.73 -34.44 -0.30 -12.78 16 6 H 0.07 1.62 7.74 -52.48 -0.41 1.22 16 7 C 0.07 1.69 5.29 -17.82 -0.09 1.60 16 8 N -0.88 -21.28 11.30 55.43 0.63 -20.65 16 9 Si 0.91 18.81 29.54 -169.99 -5.02 13.79 16 10 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 11 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 12 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 13 N -0.68 -11.49 4.64 -53.29 -0.25 -11.74 16 14 C 0.35 5.42 5.43 -83.79 -0.45 4.97 16 15 C -0.20 -2.90 6.72 -39.38 -0.26 -3.16 16 16 C 0.02 0.25 9.55 -39.61 -0.38 -0.12 16 17 C -0.14 -2.11 6.85 -79.92 -0.55 -2.65 16 18 N 0.05 0.80 4.45 33.98 0.15 0.95 16 19 O -0.18 -3.07 18.44 -29.46 -0.54 -3.61 16 20 O -0.19 -3.14 18.44 -29.46 -0.54 -3.69 16 21 C 0.10 1.39 9.00 -39.61 -0.36 1.03 16 22 C -0.76 -10.72 5.60 -39.38 -0.22 -10.94 16 23 S 2.50 31.64 5.16 -107.50 -0.56 31.09 16 24 C -0.66 -5.67 10.57 101.05 1.07 -4.60 16 25 O -0.93 -14.91 16.29 -57.54 -0.94 -15.85 16 26 O -0.94 -13.54 16.74 -57.54 -0.96 -14.50 16 27 H 0.04 0.60 5.39 -51.93 -0.28 0.32 16 28 H 0.05 0.80 6.35 -51.93 -0.33 0.47 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.11 2.39 5.95 -51.93 -0.31 2.08 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.27 6.23 8.31 -40.82 -0.34 5.89 16 33 H 0.40 6.31 4.65 -40.82 -0.19 6.12 16 34 H 0.17 2.44 4.01 -52.49 -0.21 2.22 16 35 H 0.15 1.81 7.60 -52.49 -0.40 1.41 16 36 H 0.16 2.21 6.76 -52.49 -0.35 1.86 16 37 H 0.13 1.21 6.59 -51.93 -0.34 0.87 16 38 H 0.14 0.86 8.14 -51.92 -0.42 0.43 16 39 H 0.14 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 332.33 15.07 5.01 5.01 Total: -1.00 -28.57 332.33 -8.55 -37.12 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -3.98 Total: 8.61 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: -1.54 Total: -26.51 kcal Atomic # 7 Polarization: -31.97 SS G_CDS: 0.53 Total: -31.44 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: -2.99 Total: -37.65 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.02 Total: 13.79 kcal Atomic # 16 Polarization: 31.64 SS G_CDS: -0.56 Total: 31.09 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.57 -8.55 -37.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302786347.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.792 kcal (2) G-P(sol) polarization free energy of solvation -28.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds