Wall clock time and date at job start Tue Mar 31 2020 16:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46995 * 2 1 4 4 H 1.09005 * 109.46990 * 304.99869 * 3 2 1 5 5 C 1.50701 * 109.47238 * 185.00122 * 3 2 1 6 6 H 1.08004 * 119.99973 * 239.99765 * 5 3 2 7 7 C 1.37878 * 120.00188 * 59.99533 * 5 3 2 8 8 N 1.31520 * 119.99953 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00343 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46838 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47330 * 120.00097 * 9 7 5 12 12 H 1.48498 * 109.47134 * 240.00537 * 9 7 5 13 13 N 1.46499 * 109.47493 * 64.99692 * 3 2 1 14 14 C 1.39676 * 120.00261 * 275.00623 * 13 3 2 15 15 C 1.38926 * 120.07182 * 359.97438 * 14 13 3 16 16 C 1.38089 * 119.92422 * 179.97438 * 15 14 13 17 17 C 1.38301 * 120.07155 * 0.28052 * 16 15 14 18 18 N 1.48002 * 119.92513 * 179.69947 * 17 16 15 19 19 O 1.21807 * 119.99870 * 359.97438 * 18 17 16 20 20 O 1.21805 * 120.00378 * 180.02562 * 18 17 16 21 21 C 1.38266 * 120.15343 * 359.44513 * 17 16 15 22 22 C 1.38134 * 120.07086 * 0.55323 * 21 17 16 23 23 S 1.76199 * 120.03761 * 179.69991 * 22 21 17 24 24 C 1.81403 * 104.44511 * 115.02051 * 23 22 21 25 25 O 1.42096 * 104.27766 * 231.09127 * 23 22 21 26 26 O 1.42101 * 104.27411 * 358.95322 * 23 22 21 27 27 H 1.09000 * 109.47317 * 300.00277 * 1 2 3 28 28 H 1.09000 * 109.47302 * 60.00339 * 1 2 3 29 29 H 1.08998 * 109.47126 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47525 * 240.00235 * 2 1 3 31 31 H 1.09000 * 109.47302 * 119.99661 * 2 1 3 32 32 H 0.96995 * 119.99838 * 179.97438 * 8 7 5 33 33 H 0.97003 * 119.99498 * 94.99685 * 13 3 2 34 34 H 1.08000 * 120.03920 * 359.96114 * 15 14 13 35 35 H 1.08002 * 119.96096 * 179.97438 * 16 15 14 36 36 H 1.07994 * 119.96701 * 180.27471 * 21 17 16 37 37 H 1.08993 * 109.47200 * 60.00340 * 24 23 22 38 38 H 1.08999 * 109.46810 * 179.97438 * 24 23 22 39 39 H 1.08996 * 109.47148 * 299.99982 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8891 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8801 -1.3812 10 1 6.5988 1.5444 -0.1931 11 1 6.4962 -0.5189 -1.4627 12 1 6.3999 1.6158 -2.6092 13 7 1.6524 2.0976 1.2517 14 6 0.3908 2.6850 1.3711 15 6 -0.4975 2.6495 0.3035 16 6 -1.7442 3.2307 0.4250 17 6 -2.1066 3.8529 1.6058 18 7 -3.4411 4.4806 1.7302 19 8 -4.2186 4.4494 0.7931 20 8 -3.7617 5.0293 2.7694 21 6 -1.2272 3.8852 2.6722 22 6 0.0215 3.3056 2.5574 23 16 1.1445 3.3542 3.9143 24 6 1.3451 1.6174 4.3981 25 8 2.3493 3.8581 3.3541 26 8 0.4469 4.0749 4.9209 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8293 -0.0604 -2.9502 33 1 2.2719 2.1232 1.9977 34 1 -0.2133 2.1679 -0.6205 35 1 -2.4351 3.2038 -0.4047 36 1 -1.5150 4.3679 3.5944 37 1 1.7460 1.0503 3.5582 38 1 2.0327 1.5523 5.2413 39 1 0.3774 1.2062 4.6853 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302786347.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:33 Heat of formation + Delta-G solvation = -59.681577 kcal Electronic energy + Delta-G solvation = -26792.016315 eV Core-core repulsion = 22829.945797 eV Total energy + Delta-G solvation = -3962.070518 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.15864 -41.17493 -38.54877 -37.83547 -37.58296 -37.13985 -35.04289 -33.57949 -32.34923 -31.55302 -30.47281 -28.87350 -26.69328 -25.10081 -24.80146 -23.47726 -21.69685 -20.85344 -19.84882 -19.74956 -19.22481 -18.53701 -18.04800 -17.72303 -17.52003 -17.23173 -16.73333 -16.20505 -15.91079 -15.65807 -15.28612 -14.53008 -14.48204 -14.18858 -14.10439 -13.95495 -13.65810 -13.52469 -13.27193 -13.22296 -13.14319 -12.85311 -12.78834 -12.63063 -12.37589 -12.23562 -12.20789 -12.17842 -12.09310 -11.89110 -11.72976 -11.41130 -11.04445 -10.77540 -10.50639 -8.99060 -8.25301 -6.39421 -1.05388 -1.04032 -0.40336 0.39964 0.48577 1.39917 1.45815 1.53911 1.69050 2.02063 2.15341 2.41847 2.71710 3.00890 3.06712 3.36568 3.58434 3.76739 3.84765 3.98423 4.11413 4.22414 4.33647 4.48922 4.57558 4.60106 4.63413 4.72020 4.83806 4.89591 5.08475 5.22005 5.27662 5.39687 5.49520 5.57591 5.75860 5.90865 6.12830 6.43331 6.61633 6.72754 7.31671 8.78949 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.013781 B = 0.004560 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.333454 B = 6138.223989 C = 7467.732753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.129 4.129 3 C 0.265 3.735 4 H 0.036 0.964 5 C -0.556 4.556 6 H 0.062 0.938 7 C 0.033 3.967 8 N -0.901 5.901 9 Si 0.954 3.046 10 H -0.271 1.271 11 H -0.277 1.277 12 H -0.284 1.284 13 N -0.688 5.688 14 C 0.345 3.655 15 C -0.202 4.202 16 C 0.029 3.971 17 C -0.145 4.145 18 N 0.049 4.951 19 O -0.186 6.186 20 O -0.202 6.202 21 C 0.094 3.906 22 C -0.752 4.752 23 S 2.500 3.500 24 C -0.635 4.635 25 O -0.967 6.967 26 O -0.959 6.959 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.045 0.955 32 H 0.268 0.732 33 H 0.401 0.599 34 H 0.165 0.835 35 H 0.172 0.828 36 H 0.172 0.828 37 H 0.135 0.865 38 H 0.169 0.831 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.529 -1.831 8.929 10.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.168 4.168 3 C 0.163 3.837 4 H 0.053 0.947 5 C -0.594 4.594 6 H 0.080 0.920 7 C -0.169 4.169 8 N -0.539 5.539 9 Si 0.780 3.220 10 H -0.195 1.195 11 H -0.202 1.202 12 H -0.210 1.210 13 N -0.305 5.305 14 C 0.224 3.776 15 C -0.225 4.225 16 C 0.008 3.992 17 C -0.233 4.233 18 N 0.559 4.441 19 O -0.398 6.398 20 O -0.409 6.409 21 C 0.074 3.926 22 C -0.844 4.844 23 S 2.682 3.318 24 C -0.789 4.789 25 O -0.964 6.964 26 O -0.956 6.956 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.240 0.760 34 H 0.182 0.818 35 H 0.190 0.810 36 H 0.190 0.810 37 H 0.153 0.847 38 H 0.187 0.813 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.394 -1.579 8.830 9.989 hybrid contribution 0.490 -0.298 -0.651 0.867 sum -3.904 -1.877 8.180 9.256 Atomic orbital electron populations 1.22197 0.96256 1.01422 1.01081 1.21909 0.94489 0.97886 1.02537 1.18957 0.94414 0.90125 0.80206 0.94677 1.21489 0.91635 1.39354 1.06893 0.92010 1.25433 1.02164 0.94230 0.95040 1.69924 1.36534 1.37809 1.09637 0.85560 0.80549 0.77882 0.78004 1.19525 1.20229 1.21006 1.46406 1.11443 1.53791 1.18908 1.17865 0.85302 0.82637 0.91759 1.21300 0.93322 1.07268 1.00655 1.21021 0.95745 0.87490 0.94963 1.20820 0.85632 1.15941 1.00947 1.43616 1.02827 0.98123 0.99581 1.94481 1.48672 1.64838 1.31793 1.94508 1.82170 1.45622 1.18599 1.20497 0.88257 0.86448 0.97438 1.29974 1.13885 1.22971 1.17547 1.05142 0.73352 0.79800 0.73528 1.30175 1.15211 1.19229 1.14239 1.93602 1.45664 1.78960 1.78164 1.93535 1.73831 1.70799 1.57479 0.92584 0.92608 0.92731 0.89952 0.93598 0.92263 0.76012 0.81754 0.81027 0.81046 0.84653 0.81344 0.81590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.40 8.22 71.98 0.59 -3.81 16 2 C -0.13 -4.71 5.45 30.59 0.17 -4.54 16 3 C 0.27 10.52 2.20 44.25 0.10 10.62 16 4 H 0.04 1.53 6.48 -2.38 -0.02 1.52 16 5 C -0.56 -25.69 8.73 25.60 0.22 -25.47 16 6 H 0.06 2.89 7.74 -2.91 -0.02 2.86 16 7 C 0.03 1.57 5.29 84.65 0.45 2.02 16 8 N -0.90 -43.85 11.30 21.45 0.24 -43.61 16 9 Si 0.95 38.57 29.54 68.60 2.03 40.60 16 10 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 11 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 12 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 13 N -0.69 -22.61 4.64 -322.50 -1.50 -24.11 16 14 C 0.35 10.18 5.43 38.21 0.21 10.39 16 15 C -0.20 -5.67 6.72 22.40 0.15 -5.51 16 16 C 0.03 0.74 9.55 22.25 0.21 0.96 16 17 C -0.15 -4.15 6.85 36.40 0.25 -3.90 16 18 N 0.05 1.53 4.45 -46.42 -0.21 1.32 16 19 O -0.19 -5.92 18.44 18.88 0.35 -5.57 16 20 O -0.20 -6.64 18.44 18.88 0.35 -6.30 16 21 C 0.09 2.57 9.00 22.25 0.20 2.77 16 22 C -0.75 -20.15 5.60 22.40 0.13 -20.03 16 23 S 2.50 59.50 5.16 -56.49 -0.29 59.20 16 24 C -0.63 -8.63 10.57 113.37 1.20 -7.44 16 25 O -0.97 -30.75 16.29 -127.65 -2.08 -32.83 16 26 O -0.96 -26.42 16.74 -127.65 -2.14 -28.56 16 27 H 0.06 1.46 5.39 -2.39 -0.01 1.44 16 28 H 0.06 1.58 6.35 -2.39 -0.02 1.56 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.08 3.53 5.95 -2.39 -0.01 3.52 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.27 12.52 8.31 -92.71 -0.77 11.75 16 33 H 0.40 12.41 4.65 -92.71 -0.43 11.98 16 34 H 0.17 4.69 4.01 -2.91 -0.01 4.68 16 35 H 0.17 3.71 7.60 -2.91 -0.02 3.69 16 36 H 0.17 4.41 6.76 -2.91 -0.02 4.40 16 37 H 0.14 2.00 6.59 -2.39 -0.02 1.99 16 38 H 0.17 1.35 8.14 -2.39 -0.02 1.34 16 39 H 0.17 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -61.31 332.33 1.32 -59.99 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.69 Total: 23.80 kcal Atomic # 6 Polarization: -47.82 SS G_CDS: 3.87 Total: -43.95 kcal Atomic # 7 Polarization: -64.93 SS G_CDS: -1.46 Total: -66.39 kcal Atomic # 8 Polarization: -69.73 SS G_CDS: -3.52 Total: -73.25 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.60 kcal Atomic # 16 Polarization: 59.50 SS G_CDS: -0.29 Total: 59.20 kcal Total: -61.31 1.32 -59.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302786347.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.308 kcal (2) G-P(sol) polarization free energy of solvation -61.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds