Wall clock time and date at job start Tue Mar 31 2020 16:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47118 * 2 1 4 4 H 1.08997 * 109.46964 * 54.86136 * 3 2 1 5 5 C 1.50693 * 109.47300 * 174.86413 * 3 2 1 6 6 H 1.08001 * 120.00373 * 119.99745 * 5 3 2 7 7 C 1.37876 * 120.00143 * 300.00157 * 5 3 2 8 8 N 1.31517 * 119.99831 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00101 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46962 * 90.00122 * 9 7 5 11 11 H 1.48505 * 109.46949 * 209.99957 * 9 7 5 12 12 H 1.48494 * 109.46933 * 329.99853 * 9 7 5 13 13 N 1.46501 * 109.46847 * 294.86684 * 3 2 1 14 14 C 1.39671 * 120.00002 * 157.35970 * 13 3 2 15 15 C 1.38936 * 120.07206 * 355.72247 * 14 13 3 16 16 C 1.38087 * 119.92295 * 179.72092 * 15 14 13 17 17 C 1.38314 * 120.07421 * 0.55424 * 16 15 14 18 18 N 1.48005 * 119.92246 * 179.69978 * 17 16 15 19 19 O 1.21803 * 119.99552 * 180.02562 * 18 17 16 20 20 O 1.21797 * 120.00357 * 0.02562 * 18 17 16 21 21 C 1.38260 * 120.14637 * 359.72013 * 17 16 15 22 22 C 1.38129 * 120.07947 * 359.97438 * 21 17 16 23 23 S 1.76204 * 120.03795 * 179.97438 * 22 21 17 24 24 C 1.81396 * 104.44545 * 115.02403 * 23 22 21 25 25 O 1.42096 * 104.27269 * 231.09478 * 23 22 21 26 26 O 1.42104 * 104.27491 * 358.95010 * 23 22 21 27 27 H 1.08991 * 109.47133 * 295.52756 * 1 2 3 28 28 H 1.09004 * 109.46880 * 55.53065 * 1 2 3 29 29 H 1.08996 * 109.46945 * 175.52221 * 1 2 3 30 30 H 1.08998 * 109.47139 * 240.00468 * 2 1 3 31 31 H 1.09001 * 109.47430 * 119.99749 * 2 1 3 32 32 H 0.97001 * 119.99780 * 179.97438 * 8 7 5 33 33 H 0.96997 * 120.00312 * 337.63187 * 13 3 2 34 34 H 1.08002 * 120.04091 * 359.97438 * 15 14 13 35 35 H 1.07999 * 119.96296 * 180.25298 * 16 15 14 36 36 H 1.08004 * 119.95913 * 180.02562 * 21 17 16 37 37 H 1.08996 * 109.47255 * 60.00631 * 24 23 22 38 38 H 1.09006 * 109.46975 * 179.97438 * 24 23 22 39 39 H 1.08993 * 109.47437 * 299.99464 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6035 1.9822 0.8404 5 6 3.5416 1.4445 0.1272 6 1 4.1487 1.8884 -0.6479 7 6 4.1405 0.8795 1.2331 8 7 3.4013 0.3393 2.1772 9 14 6.0019 0.8813 1.3904 10 1 6.4381 2.1147 2.0929 11 1 6.4343 -0.3092 2.1657 12 1 6.6130 0.8397 0.0376 13 7 1.6552 2.0965 -1.2532 14 6 1.5718 3.4893 -1.3172 15 6 1.7664 4.2517 -0.1721 16 6 1.6889 5.6287 -0.2401 17 6 1.4067 6.2485 -1.4440 18 7 1.3179 7.7244 -1.5116 19 8 1.0689 8.2715 -2.5709 20 8 1.4938 8.3917 -0.5080 21 6 1.2069 5.4924 -2.5841 22 6 1.2891 4.1149 -2.5245 23 16 1.0336 3.1523 -3.9781 24 6 2.6375 2.3627 -4.2857 25 8 0.0672 2.1847 -3.5922 26 8 0.7480 4.1110 -4.9875 27 1 -0.3633 0.4428 0.9273 28 1 -0.3633 0.5817 -0.8473 29 1 -0.3633 -1.0245 -0.0802 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8227 -0.0586 2.9551 33 1 1.4544 1.5622 -2.0374 34 1 1.9820 3.7682 0.7692 35 1 1.8441 6.2222 0.6488 36 1 0.9871 5.9796 -3.5227 37 1 2.9077 1.7437 -3.4301 38 1 2.5706 1.7396 -5.1776 39 1 3.3976 3.1296 -4.4340 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302786349.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:39 Heat of formation + Delta-G solvation = -50.708223 kcal Electronic energy + Delta-G solvation = -26692.612052 eV Core-core repulsion = 22730.930648 eV Total energy + Delta-G solvation = -3961.681404 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.82771 -39.67557 -37.40908 -36.48126 -36.23938 -36.05519 -33.52700 -31.92254 -31.47344 -29.79558 -29.59624 -27.31965 -25.42572 -23.79036 -23.34878 -21.91188 -20.40893 -19.64523 -18.64748 -18.37886 -17.56555 -17.21246 -16.96370 -16.46191 -16.36329 -16.15948 -15.33703 -14.82383 -14.32719 -14.12514 -13.80836 -13.46417 -13.38951 -13.20768 -13.09099 -12.73611 -12.34730 -12.17475 -12.12072 -12.01516 -11.62803 -11.46597 -11.27834 -11.18427 -11.09919 -10.90931 -10.86894 -10.77962 -10.70533 -10.42921 -10.28905 -10.08306 -9.65807 -9.38883 -8.80736 -7.69414 -6.45659 -4.59443 -0.06724 0.29018 0.82243 1.73469 1.78579 2.72194 3.03537 3.12542 3.13066 3.30972 3.47607 3.71679 4.04060 4.08241 4.54583 4.63997 4.75311 4.83167 4.85546 5.08824 5.19346 5.43737 5.54491 5.72024 5.83321 5.87820 5.96113 5.99479 6.13595 6.38176 6.48052 6.59310 6.69909 6.74637 6.92246 7.24216 7.30366 7.55008 7.73250 7.82626 7.98628 8.44688 9.10461 10.56584 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.010713 B = 0.005149 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.072452 B = 5436.122009 C = 6775.389747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.131 4.131 3 C 0.259 3.741 4 H 0.054 0.946 5 C -0.544 4.544 6 H 0.064 0.936 7 C 0.072 3.928 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.689 5.689 14 C 0.360 3.640 15 C -0.182 4.182 16 C 0.019 3.981 17 C -0.139 4.139 18 N 0.049 4.951 19 O -0.187 6.187 20 O -0.184 6.184 21 C 0.094 3.906 22 C -0.760 4.760 23 S 2.502 3.498 24 C -0.656 4.656 25 O -0.934 6.934 26 O -0.939 6.939 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.114 0.886 32 H 0.269 0.731 33 H 0.394 0.606 34 H 0.165 0.835 35 H 0.152 0.848 36 H 0.164 0.836 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.674 1.583 -7.357 7.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.169 4.169 3 C 0.158 3.842 4 H 0.072 0.928 5 C -0.582 4.582 6 H 0.082 0.918 7 C -0.133 4.133 8 N -0.517 5.517 9 Si 0.727 3.273 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.198 1.198 13 N -0.306 5.306 14 C 0.238 3.762 15 C -0.205 4.205 16 C -0.002 4.002 17 C -0.227 4.227 18 N 0.561 4.439 19 O -0.397 6.397 20 O -0.396 6.396 21 C 0.074 3.926 22 C -0.853 4.853 23 S 2.682 3.318 24 C -0.807 4.807 25 O -0.931 6.931 26 O -0.936 6.936 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.132 0.868 32 H 0.079 0.921 33 H 0.231 0.769 34 H 0.182 0.818 35 H 0.169 0.831 36 H 0.181 0.819 37 H 0.155 0.845 38 H 0.153 0.847 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.317 0.510 -7.385 7.757 hybrid contribution 1.685 0.228 0.472 1.765 sum -0.632 0.737 -6.914 6.982 Atomic orbital electron populations 1.21903 0.98187 1.00248 1.01014 1.21912 0.92755 0.98359 1.03905 1.19282 0.95164 0.90190 0.79569 0.92809 1.21377 0.90309 1.39987 1.06553 0.91820 1.24887 0.98866 0.94291 0.95207 1.69823 1.35536 1.37024 1.09352 0.86452 0.84407 0.77993 0.78419 1.20279 1.20854 1.19825 1.46608 1.64826 1.01845 1.17275 1.17617 0.81802 0.85034 0.91762 1.21034 1.08143 0.91770 0.99576 1.20898 0.88784 0.94718 0.95816 1.20681 1.25050 0.78777 0.98226 1.43460 0.96833 1.03640 0.99971 1.94501 1.52582 1.74113 1.18530 1.94490 1.54549 1.64278 1.26239 1.20325 0.83539 0.90959 0.97799 1.29741 1.32582 1.05846 1.17146 1.05062 0.77331 0.75229 0.74208 1.30305 1.22996 1.14768 1.12598 1.93601 1.55491 1.61533 1.82443 1.93562 1.83208 1.60102 1.56701 0.93373 0.93458 0.94014 0.93911 0.86842 0.92094 0.76919 0.81781 0.83075 0.81868 0.84481 0.84669 0.84454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.85 37.16 0.37 -2.28 16 2 C -0.13 -2.50 5.30 -26.73 -0.14 -2.64 16 3 C 0.26 5.05 1.68 -69.08 -0.12 4.93 16 4 H 0.05 1.13 6.45 -51.93 -0.33 0.79 16 5 C -0.54 -11.86 8.72 -34.44 -0.30 -12.16 16 6 H 0.06 1.39 7.81 -52.49 -0.41 0.98 16 7 C 0.07 1.64 5.29 -17.82 -0.09 1.55 16 8 N -0.88 -20.88 11.29 55.43 0.63 -20.26 16 9 Si 0.90 18.38 29.54 -169.99 -5.02 13.36 16 10 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 11 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 12 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 13 N -0.69 -11.44 4.04 -53.29 -0.22 -11.65 16 14 C 0.36 5.74 6.54 -83.79 -0.55 5.19 16 15 C -0.18 -2.89 9.18 -39.38 -0.36 -3.25 16 16 C 0.02 0.29 9.55 -39.61 -0.38 -0.09 16 17 C -0.14 -2.20 6.85 -79.92 -0.55 -2.75 16 18 N 0.05 0.83 4.45 33.98 0.15 0.98 16 19 O -0.19 -3.26 18.44 -29.46 -0.54 -3.81 16 20 O -0.18 -3.20 18.44 -29.46 -0.54 -3.74 16 21 C 0.09 1.41 9.00 -39.61 -0.36 1.05 16 22 C -0.76 -11.00 5.60 -39.38 -0.22 -11.22 16 23 S 2.50 31.57 5.17 -107.50 -0.56 31.02 16 24 C -0.66 -6.07 10.58 101.05 1.07 -5.00 16 25 O -0.93 -14.11 16.20 -57.54 -0.93 -15.05 16 26 O -0.94 -13.65 16.74 -57.54 -0.96 -14.61 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.79 7.62 -51.93 -0.40 0.39 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.11 2.46 5.95 -51.93 -0.31 2.15 16 32 H 0.27 6.19 8.31 -40.82 -0.34 5.85 16 33 H 0.39 5.95 4.79 -40.82 -0.20 5.76 16 34 H 0.16 2.71 6.21 -52.49 -0.33 2.39 16 35 H 0.15 1.98 7.60 -52.49 -0.40 1.58 16 36 H 0.16 2.27 6.76 -52.48 -0.35 1.92 16 37 H 0.14 1.37 6.68 -51.93 -0.35 1.03 16 38 H 0.13 0.89 8.14 -51.92 -0.42 0.47 16 39 H 0.14 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 342.66 15.07 5.16 5.16 Total: -1.00 -27.54 342.66 -8.78 -36.32 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -4.32 Total: 8.95 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: -1.63 Total: -26.68 kcal Atomic # 7 Polarization: -31.49 SS G_CDS: 0.56 Total: -30.92 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -2.98 Total: -37.20 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.02 Total: 13.36 kcal Atomic # 16 Polarization: 31.57 SS G_CDS: -0.56 Total: 31.02 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.54 -8.78 -36.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302786349.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.390 kcal (2) G-P(sol) polarization free energy of solvation -27.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds