Wall clock time and date at job start Tue Mar 31 2020 16:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47118 * 2 1 4 4 H 1.08997 * 109.46964 * 54.86136 * 3 2 1 5 5 C 1.50693 * 109.47300 * 174.86413 * 3 2 1 6 6 H 1.08001 * 120.00373 * 119.99745 * 5 3 2 7 7 C 1.37876 * 120.00143 * 300.00157 * 5 3 2 8 8 N 1.31517 * 119.99831 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00101 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46962 * 90.00122 * 9 7 5 11 11 H 1.48505 * 109.46949 * 209.99957 * 9 7 5 12 12 H 1.48494 * 109.46933 * 329.99853 * 9 7 5 13 13 N 1.46501 * 109.46847 * 294.86684 * 3 2 1 14 14 C 1.39671 * 120.00002 * 157.35970 * 13 3 2 15 15 C 1.38936 * 120.07206 * 355.72247 * 14 13 3 16 16 C 1.38087 * 119.92295 * 179.72092 * 15 14 13 17 17 C 1.38314 * 120.07421 * 0.55424 * 16 15 14 18 18 N 1.48005 * 119.92246 * 179.69978 * 17 16 15 19 19 O 1.21803 * 119.99552 * 180.02562 * 18 17 16 20 20 O 1.21797 * 120.00357 * 0.02562 * 18 17 16 21 21 C 1.38260 * 120.14637 * 359.72013 * 17 16 15 22 22 C 1.38129 * 120.07947 * 359.97438 * 21 17 16 23 23 S 1.76204 * 120.03795 * 179.97438 * 22 21 17 24 24 C 1.81396 * 104.44545 * 115.02403 * 23 22 21 25 25 O 1.42096 * 104.27269 * 231.09478 * 23 22 21 26 26 O 1.42104 * 104.27491 * 358.95010 * 23 22 21 27 27 H 1.08991 * 109.47133 * 295.52756 * 1 2 3 28 28 H 1.09004 * 109.46880 * 55.53065 * 1 2 3 29 29 H 1.08996 * 109.46945 * 175.52221 * 1 2 3 30 30 H 1.08998 * 109.47139 * 240.00468 * 2 1 3 31 31 H 1.09001 * 109.47430 * 119.99749 * 2 1 3 32 32 H 0.97001 * 119.99780 * 179.97438 * 8 7 5 33 33 H 0.96997 * 120.00312 * 337.63187 * 13 3 2 34 34 H 1.08002 * 120.04091 * 359.97438 * 15 14 13 35 35 H 1.07999 * 119.96296 * 180.25298 * 16 15 14 36 36 H 1.08004 * 119.95913 * 180.02562 * 21 17 16 37 37 H 1.08996 * 109.47255 * 60.00631 * 24 23 22 38 38 H 1.09006 * 109.46975 * 179.97438 * 24 23 22 39 39 H 1.08993 * 109.47437 * 299.99464 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6035 1.9822 0.8404 5 6 3.5416 1.4445 0.1272 6 1 4.1487 1.8884 -0.6479 7 6 4.1405 0.8795 1.2331 8 7 3.4013 0.3393 2.1772 9 14 6.0019 0.8813 1.3904 10 1 6.4381 2.1147 2.0929 11 1 6.4343 -0.3092 2.1657 12 1 6.6130 0.8397 0.0376 13 7 1.6552 2.0965 -1.2532 14 6 1.5718 3.4893 -1.3172 15 6 1.7664 4.2517 -0.1721 16 6 1.6889 5.6287 -0.2401 17 6 1.4067 6.2485 -1.4440 18 7 1.3179 7.7244 -1.5116 19 8 1.0689 8.2715 -2.5709 20 8 1.4938 8.3917 -0.5080 21 6 1.2069 5.4924 -2.5841 22 6 1.2891 4.1149 -2.5245 23 16 1.0336 3.1523 -3.9781 24 6 2.6375 2.3627 -4.2857 25 8 0.0672 2.1847 -3.5922 26 8 0.7480 4.1110 -4.9875 27 1 -0.3633 0.4428 0.9273 28 1 -0.3633 0.5817 -0.8473 29 1 -0.3633 -1.0245 -0.0802 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8227 -0.0586 2.9551 33 1 1.4544 1.5622 -2.0374 34 1 1.9820 3.7682 0.7692 35 1 1.8441 6.2222 0.6488 36 1 0.9871 5.9796 -3.5227 37 1 2.9077 1.7437 -3.4301 38 1 2.5706 1.7396 -5.1776 39 1 3.3976 3.1296 -4.4340 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302786349.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:38 Heat of formation + Delta-G solvation = -66.617205 kcal Electronic energy + Delta-G solvation = -26693.301918 eV Core-core repulsion = 22730.930648 eV Total energy + Delta-G solvation = -3962.371270 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.15893 -40.95058 -38.56424 -37.82277 -37.59060 -37.13841 -35.02068 -33.46302 -32.69679 -31.07740 -30.44342 -28.86665 -26.80135 -25.15714 -24.72503 -23.22310 -21.83711 -20.90678 -19.77385 -19.68416 -18.84688 -18.61657 -18.53919 -17.67880 -17.50465 -17.21407 -16.69582 -16.18387 -15.65835 -15.45343 -15.17625 -14.72063 -14.58085 -14.11790 -14.05648 -14.02514 -13.63944 -13.44561 -13.27183 -13.23012 -13.15252 -12.98408 -12.70552 -12.63533 -12.30087 -12.24386 -12.21542 -12.19174 -12.02843 -11.86974 -11.76168 -11.59507 -11.01831 -10.75747 -10.51826 -9.04620 -8.16607 -6.34473 -1.04183 -1.03199 -0.37868 0.42550 0.48603 1.41138 1.46997 1.51638 1.68972 2.09466 2.14107 2.42744 2.71751 3.01714 3.10785 3.39391 3.59326 3.80548 3.86997 4.00086 4.12706 4.24290 4.38539 4.50160 4.53519 4.63264 4.71016 4.74008 4.86769 4.99326 5.07478 5.19973 5.28962 5.38710 5.49635 5.63725 5.74251 5.98500 6.13262 6.46731 6.61806 6.74630 7.36954 8.83168 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.010713 B = 0.005149 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.072452 B = 5436.122009 C = 6775.389747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C 0.266 3.734 4 H 0.036 0.964 5 C -0.543 4.543 6 H 0.064 0.936 7 C 0.033 3.967 8 N -0.904 5.904 9 Si 0.947 3.053 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.269 1.269 13 N -0.689 5.689 14 C 0.353 3.647 15 C -0.193 4.193 16 C 0.027 3.973 17 C -0.147 4.147 18 N 0.049 4.951 19 O -0.197 6.197 20 O -0.192 6.192 21 C 0.093 3.907 22 C -0.753 4.753 23 S 2.508 3.492 24 C -0.638 4.638 25 O -0.961 6.961 26 O -0.958 6.958 27 H 0.041 0.959 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.266 0.734 33 H 0.402 0.598 34 H 0.155 0.845 35 H 0.168 0.832 36 H 0.174 0.826 37 H 0.135 0.865 38 H 0.170 0.830 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.002 1.331 -8.828 8.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C 0.164 3.836 4 H 0.054 0.946 5 C -0.581 4.581 6 H 0.082 0.918 7 C -0.168 4.168 8 N -0.542 5.542 9 Si 0.774 3.226 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.193 1.193 13 N -0.308 5.308 14 C 0.232 3.768 15 C -0.216 4.216 16 C 0.006 3.994 17 C -0.235 4.235 18 N 0.559 4.441 19 O -0.406 6.406 20 O -0.402 6.402 21 C 0.073 3.927 22 C -0.844 4.844 23 S 2.689 3.311 24 C -0.791 4.791 25 O -0.958 6.958 26 O -0.956 6.956 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.240 0.760 34 H 0.172 0.828 35 H 0.185 0.815 36 H 0.191 0.809 37 H 0.153 0.847 38 H 0.188 0.812 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.681 0.318 -8.856 9.020 hybrid contribution 1.484 0.321 0.867 1.748 sum -0.197 0.639 -7.990 8.018 Atomic orbital electron populations 1.21812 0.96557 1.01345 1.00823 1.21789 0.94188 0.97755 1.02957 1.18966 0.93912 0.90461 0.80268 0.94628 1.21634 0.91634 1.38805 1.06051 0.91816 1.25434 1.01461 0.94570 0.95379 1.69927 1.36429 1.38131 1.09744 0.85723 0.81365 0.77324 0.78218 1.20779 1.21332 1.19348 1.46289 1.65751 1.02101 1.16662 1.17733 0.81990 0.84778 0.92301 1.20992 1.09070 0.92160 0.99393 1.21019 0.87696 0.94430 0.96215 1.20820 1.25660 0.78122 0.98889 1.43606 0.96611 1.04080 0.99804 1.94494 1.52992 1.74449 1.18620 1.94482 1.54801 1.64678 1.26261 1.20507 0.83090 0.91146 0.97960 1.30027 1.30939 1.05794 1.17619 1.04973 0.78596 0.74554 0.73013 1.30186 1.19550 1.15327 1.14071 1.93565 1.58056 1.61649 1.82542 1.93538 1.84458 1.60990 1.56585 0.93938 0.93139 0.92344 0.93195 0.89391 0.92450 0.75972 0.82773 0.81494 0.80899 0.84699 0.81212 0.82249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.87 9.85 71.98 0.71 -4.16 16 2 C -0.13 -4.84 5.30 30.60 0.16 -4.68 16 3 C 0.27 10.29 1.68 44.25 0.07 10.36 16 4 H 0.04 1.52 6.45 -2.39 -0.02 1.51 16 5 C -0.54 -23.32 8.72 25.60 0.22 -23.10 16 6 H 0.06 2.69 7.81 -2.91 -0.02 2.66 16 7 C 0.03 1.51 5.29 84.65 0.45 1.95 16 8 N -0.90 -43.26 11.29 21.45 0.24 -43.02 16 9 Si 0.95 37.26 29.54 68.60 2.03 39.28 16 10 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 11 H -0.29 -11.43 7.11 99.48 0.71 -10.73 16 12 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 13 N -0.69 -22.13 4.04 -322.51 -1.30 -23.43 16 14 C 0.35 10.87 6.54 38.21 0.25 11.12 16 15 C -0.19 -6.03 9.18 22.40 0.21 -5.82 16 16 C 0.03 0.79 9.55 22.25 0.21 1.01 16 17 C -0.15 -4.48 6.85 36.40 0.25 -4.23 16 18 N 0.05 1.63 4.45 -46.42 -0.21 1.42 16 19 O -0.20 -6.69 18.44 18.88 0.35 -6.35 16 20 O -0.19 -6.49 18.44 18.89 0.35 -6.14 16 21 C 0.09 2.66 9.00 22.25 0.20 2.86 16 22 C -0.75 -20.67 5.60 22.40 0.13 -20.55 16 23 S 2.51 58.07 5.17 -56.49 -0.29 57.77 16 24 C -0.64 -9.38 10.58 113.37 1.20 -8.18 16 25 O -0.96 -27.56 16.20 -127.65 -2.07 -29.62 16 26 O -0.96 -26.04 16.74 -127.65 -2.14 -28.17 16 27 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.05 1.62 7.62 -2.38 -0.02 1.60 16 29 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.09 3.83 5.95 -2.39 -0.01 3.82 16 32 H 0.27 12.39 8.31 -92.71 -0.77 11.62 16 33 H 0.40 11.50 4.79 -92.71 -0.44 11.05 16 34 H 0.15 5.16 6.21 -2.91 -0.02 5.14 16 35 H 0.17 4.21 7.60 -2.91 -0.02 4.19 16 36 H 0.17 4.57 6.76 -2.91 -0.02 4.55 16 37 H 0.13 2.24 6.68 -2.39 -0.02 2.22 16 38 H 0.17 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.16 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -57.85 342.66 1.68 -56.17 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.66 Total: 25.52 kcal Atomic # 6 Polarization: -47.48 SS G_CDS: 4.06 Total: -43.42 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: -1.27 Total: -65.03 kcal Atomic # 8 Polarization: -66.78 SS G_CDS: -3.51 Total: -70.29 kcal Atomic # 14 Polarization: 37.26 SS G_CDS: 2.03 Total: 39.28 kcal Atomic # 16 Polarization: 58.07 SS G_CDS: -0.29 Total: 57.77 kcal Total: -57.85 1.68 -56.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302786349.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.450 kcal (2) G-P(sol) polarization free energy of solvation -57.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds