Wall clock time and date at job start Tue Mar 31 2020 16:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47015 * 2 1 4 4 C 1.50697 * 109.47103 * 240.00113 * 2 1 3 5 5 H 1.08007 * 120.00103 * 243.42389 * 4 2 1 6 6 C 1.37879 * 120.00063 * 63.42155 * 4 2 1 7 7 N 1.31520 * 119.99729 * 191.42250 * 6 4 2 8 8 Si 1.86799 * 119.99977 * 11.41502 * 6 4 2 9 9 H 1.48501 * 109.46655 * 84.54226 * 8 6 4 10 10 H 1.48496 * 109.47268 * 204.53905 * 8 6 4 11 11 H 1.48503 * 109.47220 * 324.54142 * 8 6 4 12 12 C 1.52999 * 109.47278 * 120.00104 * 2 1 3 13 13 N 1.46500 * 109.47101 * 300.00310 * 12 2 1 14 14 S 1.65599 * 120.00130 * 162.82282 * 13 12 2 15 15 O 1.42099 * 106.40216 * 307.68586 * 14 13 12 16 16 O 1.42105 * 106.40247 * 174.76851 * 14 13 12 17 17 C 1.76196 * 107.21890 * 61.22601 * 14 13 12 18 18 C 1.38253 * 120.00303 * 240.47674 * 17 14 13 19 19 C 1.38213 * 120.00408 * 180.27653 * 18 17 14 20 20 C 1.38256 * 119.99601 * 359.49351 * 19 18 17 21 21 C 1.38217 * 120.00193 * 0.48422 * 20 19 18 22 22 C 1.38217 * 120.00063 * 60.50335 * 17 14 13 23 23 N 1.48021 * 119.99932 * 359.97438 * 22 17 14 24 24 O 1.21800 * 119.99999 * 173.24625 * 23 22 17 25 25 O 1.21802 * 120.00095 * 353.25662 * 23 22 17 26 26 H 1.08997 * 109.46780 * 313.45321 * 1 2 3 27 27 H 1.08998 * 109.46908 * 73.45127 * 1 2 3 28 28 H 1.09001 * 109.46722 * 193.45190 * 1 2 3 29 29 H 1.09011 * 109.47208 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47508 * 299.99931 * 3 2 1 31 31 H 1.08998 * 109.47162 * 60.00256 * 3 2 1 32 32 H 0.97003 * 119.99514 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.47226 * 179.97438 * 12 2 1 34 34 H 1.09004 * 109.47260 * 59.99635 * 12 2 1 35 35 H 0.97002 * 119.99661 * 342.81811 * 13 12 2 36 36 H 1.08003 * 119.99622 * 0.02562 * 18 17 14 37 37 H 1.08000 * 120.00353 * 179.73064 * 19 18 17 38 38 H 1.08004 * 120.00140 * 180.25930 * 20 19 18 39 39 H 1.08003 * 120.00010 * 179.76070 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6069 -1.6197 -1.1324 6 6 1.7585 -0.1996 -2.4815 7 7 1.9954 -0.9235 -3.5537 8 14 1.0507 1.5205 -2.6536 9 1 2.1543 2.5139 -2.6352 10 1 0.3115 1.6256 -3.9372 11 1 0.1236 1.7896 -1.5251 12 6 2.0401 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 16 1.5758 -0.7984 3.9125 15 8 0.9178 -2.0437 3.7246 16 8 1.1619 0.1619 4.8747 17 6 3.2582 -1.1746 4.2767 18 6 3.6509 -2.4889 4.4497 19 6 4.9694 -2.7836 4.7411 20 6 5.8978 -1.7648 4.8492 21 6 5.5054 -0.4509 4.6758 22 6 4.1853 -0.1558 4.3901 23 7 3.7649 1.2514 4.2050 24 8 4.5506 2.1557 4.4250 25 8 2.6332 1.5050 3.8328 26 1 -0.3633 0.7068 0.7460 27 1 -0.3633 0.2927 -0.9851 28 1 -0.3633 -0.9995 0.2391 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9562 0.8900 32 1 1.8031 -0.5640 -4.4338 33 1 3.1301 -0.7217 1.2490 34 1 1.6767 -1.7490 1.2493 35 1 1.2143 0.8762 2.3780 36 1 2.9264 -3.2850 4.3611 37 1 5.2753 -3.8100 4.8805 38 1 6.9290 -1.9954 5.0727 39 1 6.2299 0.3452 4.7642 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315478138.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:55 Heat of formation + Delta-G solvation = -13.697160 kcal Electronic energy + Delta-G solvation = -27505.696300 eV Core-core repulsion = 23545.619816 eV Total energy + Delta-G solvation = -3960.076484 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.44990 -39.72602 -37.38578 -37.29846 -36.52974 -35.76886 -33.23710 -32.52535 -32.04229 -31.28467 -26.91598 -26.33999 -25.70905 -24.62547 -24.00316 -22.91233 -20.16281 -19.31096 -19.24892 -18.87734 -17.83343 -17.74419 -17.21536 -16.28594 -16.03638 -15.86093 -15.26908 -15.17462 -14.97114 -14.31411 -13.95997 -13.68908 -13.19190 -12.93601 -12.71739 -12.51516 -12.36763 -12.04613 -12.01054 -11.96482 -11.80441 -11.69132 -11.54159 -11.48712 -11.17571 -11.05733 -10.43381 -10.25824 -10.20550 -10.10386 -10.02477 -9.99026 -9.07781 -9.02648 -8.65165 -8.48276 -6.14714 -4.13351 -0.65983 0.19263 0.41625 1.04975 1.07023 2.65201 3.08854 3.28351 3.37692 3.42350 3.64716 3.84267 4.05758 4.31739 4.37213 4.37697 4.56329 4.80812 4.97458 5.11099 5.17641 5.29995 5.48014 5.53060 5.79701 5.90192 6.04331 6.08663 6.14512 6.41285 6.51754 6.58599 6.70971 6.74621 6.94459 7.21269 7.29921 7.46178 7.59068 7.74263 8.42558 8.86803 9.49355 10.98080 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.015845 B = 0.004669 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.701190 B = 5995.125334 C = 6038.844863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.037 3.963 3 C -0.149 4.149 4 C -0.514 4.514 5 H 0.075 0.925 6 C 0.075 3.925 7 N -0.894 5.894 8 Si 0.888 3.112 9 H -0.287 1.287 10 H -0.306 1.306 11 H -0.248 1.248 12 C 0.136 3.864 13 N -1.091 6.091 14 S 2.696 3.304 15 O -0.952 6.952 16 O -0.946 6.946 17 C -0.626 4.626 18 C -0.018 4.018 19 C -0.089 4.089 20 C -0.071 4.071 21 C -0.070 4.070 22 C 0.046 3.954 23 N 0.017 4.983 24 O -0.139 6.139 25 O -0.136 6.136 26 H 0.028 0.972 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.041 0.959 31 H 0.039 0.961 32 H 0.264 0.736 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.426 0.574 36 H 0.167 0.833 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.539 -2.378 17.976 19.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.034 3.966 3 C -0.206 4.206 4 C -0.552 4.552 5 H 0.093 0.907 6 C -0.127 4.127 7 N -0.531 5.531 8 Si 0.721 3.279 9 H -0.215 1.215 10 H -0.235 1.235 11 H -0.173 1.173 12 C 0.011 3.989 13 N -0.858 5.858 14 S 2.778 3.222 15 O -0.942 6.942 16 O -0.936 6.936 17 C -0.708 4.708 18 C -0.038 4.038 19 C -0.108 4.108 20 C -0.089 4.089 21 C -0.090 4.090 22 C -0.037 4.037 23 N 0.537 4.463 24 O -0.358 6.358 25 O -0.351 6.351 26 H 0.047 0.953 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.266 0.734 36 H 0.184 0.816 37 H 0.171 0.829 38 H 0.172 0.828 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 7.150 -3.478 18.424 20.067 hybrid contribution 0.480 1.659 -0.538 1.809 sum 7.630 -1.819 17.886 19.531 Atomic orbital electron populations 1.22263 0.97441 0.99915 1.00314 1.18616 0.92892 0.92187 0.92909 1.22355 1.00832 0.98346 0.99085 1.20741 1.35601 1.10698 0.88188 0.90699 1.24970 0.94608 0.97454 0.95706 1.69932 1.48433 1.36476 0.98261 0.87217 0.79619 0.85138 0.75952 1.21459 1.23518 1.17343 1.21491 0.97204 0.96161 0.84073 1.55502 1.78927 1.29297 1.22120 1.02218 0.72872 0.73524 0.73619 1.93601 1.69642 1.44908 1.86069 1.93625 1.79410 1.60441 1.60092 1.31427 1.28096 0.99088 1.12167 1.21216 0.97642 0.93699 0.91201 1.21810 0.92829 1.01011 0.95158 1.21535 1.01098 0.91003 0.95296 1.21215 0.93439 0.99154 0.95201 1.20557 0.95639 0.80535 1.06941 1.43647 1.00779 1.02982 0.98857 1.94528 1.49568 1.38470 1.53199 1.94499 1.04648 1.88902 1.47060 0.95317 0.92661 0.93325 0.93161 0.94044 0.94218 0.92571 0.93225 0.90583 0.73385 0.81574 0.82925 0.82786 0.82163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 7.45 37.16 0.28 -2.71 16 2 C 0.04 0.80 0.52 -155.66 -0.08 0.72 16 3 C -0.15 -3.12 7.48 37.15 0.28 -2.84 16 4 C -0.51 -13.53 8.62 -34.44 -0.30 -13.83 16 5 H 0.07 2.11 7.99 -52.48 -0.42 1.69 16 6 C 0.08 2.08 5.33 -17.82 -0.09 1.98 16 7 N -0.89 -26.49 13.96 55.43 0.77 -25.71 16 8 Si 0.89 21.47 22.71 -169.99 -3.86 17.61 16 9 H -0.29 -6.92 7.07 56.52 0.40 -6.52 16 10 H -0.31 -7.57 7.11 56.52 0.40 -7.17 16 11 H -0.25 -5.53 4.73 56.52 0.27 -5.26 16 12 C 0.14 2.52 4.97 -4.04 -0.02 2.50 16 13 N -1.09 -18.14 3.95 -10.61 -0.04 -18.19 16 14 S 2.70 42.26 4.88 -107.50 -0.53 41.73 16 15 O -0.95 -16.17 16.57 -57.17 -0.95 -17.12 16 16 O -0.95 -16.75 15.57 -67.13 -1.04 -17.80 16 17 C -0.63 -8.16 5.79 -39.58 -0.23 -8.39 16 18 C -0.02 -0.18 9.55 -39.58 -0.38 -0.56 16 19 C -0.09 -0.60 10.05 -39.58 -0.40 -1.00 16 20 C -0.07 -0.45 10.05 -39.58 -0.40 -0.85 16 21 C -0.07 -0.65 9.56 -39.58 -0.38 -1.03 16 22 C 0.05 0.60 6.81 -79.95 -0.54 0.06 16 23 N 0.02 0.26 4.45 33.96 0.15 0.41 16 24 O -0.14 -2.10 18.47 -29.46 -0.54 -2.65 16 25 O -0.14 -2.29 11.67 -37.20 -0.43 -2.73 16 26 H 0.03 0.53 7.63 -51.93 -0.40 0.13 16 27 H 0.05 1.23 4.50 -51.93 -0.23 1.00 16 28 H 0.05 0.99 8.07 -51.93 -0.42 0.57 16 29 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 30 H 0.04 0.92 2.15 -51.93 -0.11 0.81 16 31 H 0.04 0.72 6.57 -51.93 -0.34 0.38 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.40 7.81 -51.93 -0.41 0.99 16 35 H 0.43 6.92 5.38 -34.47 -0.19 6.74 16 36 H 0.17 1.41 7.35 -52.48 -0.39 1.02 16 37 H 0.15 0.48 8.06 -52.49 -0.42 0.06 16 38 H 0.15 0.41 8.06 -52.48 -0.42 -0.01 16 39 H 0.16 1.17 7.63 -52.48 -0.40 0.77 16 LS Contribution 323.10 15.07 4.87 4.87 Total: -1.00 -34.04 323.10 -8.13 -42.17 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -4.26 Total: 3.35 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: -2.26 Total: -25.96 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.88 Total: -43.49 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -2.97 Total: -40.29 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -3.86 Total: 17.61 kcal Atomic # 16 Polarization: 42.26 SS G_CDS: -0.53 Total: 41.73 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.04 -8.13 -42.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315478138.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.475 kcal (2) G-P(sol) polarization free energy of solvation -34.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds