Wall clock time and date at job start Tue Mar 31 2020 16:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47015 * 2 1 4 4 C 1.50697 * 109.47103 * 240.00113 * 2 1 3 5 5 H 1.08007 * 120.00103 * 243.42389 * 4 2 1 6 6 C 1.37879 * 120.00063 * 63.42155 * 4 2 1 7 7 N 1.31520 * 119.99729 * 191.42250 * 6 4 2 8 8 Si 1.86799 * 119.99977 * 11.41502 * 6 4 2 9 9 H 1.48501 * 109.46655 * 84.54226 * 8 6 4 10 10 H 1.48496 * 109.47268 * 204.53905 * 8 6 4 11 11 H 1.48503 * 109.47220 * 324.54142 * 8 6 4 12 12 C 1.52999 * 109.47278 * 120.00104 * 2 1 3 13 13 N 1.46500 * 109.47101 * 300.00310 * 12 2 1 14 14 S 1.65599 * 120.00130 * 162.82282 * 13 12 2 15 15 O 1.42099 * 106.40216 * 307.68586 * 14 13 12 16 16 O 1.42105 * 106.40247 * 174.76851 * 14 13 12 17 17 C 1.76196 * 107.21890 * 61.22601 * 14 13 12 18 18 C 1.38253 * 120.00303 * 240.47674 * 17 14 13 19 19 C 1.38213 * 120.00408 * 180.27653 * 18 17 14 20 20 C 1.38256 * 119.99601 * 359.49351 * 19 18 17 21 21 C 1.38217 * 120.00193 * 0.48422 * 20 19 18 22 22 C 1.38217 * 120.00063 * 60.50335 * 17 14 13 23 23 N 1.48021 * 119.99932 * 359.97438 * 22 17 14 24 24 O 1.21800 * 119.99999 * 173.24625 * 23 22 17 25 25 O 1.21802 * 120.00095 * 353.25662 * 23 22 17 26 26 H 1.08997 * 109.46780 * 313.45321 * 1 2 3 27 27 H 1.08998 * 109.46908 * 73.45127 * 1 2 3 28 28 H 1.09001 * 109.46722 * 193.45190 * 1 2 3 29 29 H 1.09011 * 109.47208 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47508 * 299.99931 * 3 2 1 31 31 H 1.08998 * 109.47162 * 60.00256 * 3 2 1 32 32 H 0.97003 * 119.99514 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.47226 * 179.97438 * 12 2 1 34 34 H 1.09004 * 109.47260 * 59.99635 * 12 2 1 35 35 H 0.97002 * 119.99661 * 342.81811 * 13 12 2 36 36 H 1.08003 * 119.99622 * 0.02562 * 18 17 14 37 37 H 1.08000 * 120.00353 * 179.73064 * 19 18 17 38 38 H 1.08004 * 120.00140 * 180.25930 * 20 19 18 39 39 H 1.08003 * 120.00010 * 179.76070 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6069 -1.6197 -1.1324 6 6 1.7585 -0.1996 -2.4815 7 7 1.9954 -0.9235 -3.5537 8 14 1.0507 1.5205 -2.6536 9 1 2.1543 2.5139 -2.6352 10 1 0.3115 1.6256 -3.9372 11 1 0.1236 1.7896 -1.5251 12 6 2.0401 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 16 1.5758 -0.7984 3.9125 15 8 0.9178 -2.0437 3.7246 16 8 1.1619 0.1619 4.8747 17 6 3.2582 -1.1746 4.2767 18 6 3.6509 -2.4889 4.4497 19 6 4.9694 -2.7836 4.7411 20 6 5.8978 -1.7648 4.8492 21 6 5.5054 -0.4509 4.6758 22 6 4.1853 -0.1558 4.3901 23 7 3.7649 1.2514 4.2050 24 8 4.5506 2.1557 4.4250 25 8 2.6332 1.5050 3.8328 26 1 -0.3633 0.7068 0.7460 27 1 -0.3633 0.2927 -0.9851 28 1 -0.3633 -0.9995 0.2391 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9562 0.8900 32 1 1.8031 -0.5640 -4.4338 33 1 3.1301 -0.7217 1.2490 34 1 1.6767 -1.7490 1.2493 35 1 1.2143 0.8762 2.3780 36 1 2.9264 -3.2850 4.3611 37 1 5.2753 -3.8100 4.8805 38 1 6.9290 -1.9954 5.0727 39 1 6.2299 0.3452 4.7642 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315478138.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:54 Heat of formation + Delta-G solvation = -38.423964 kcal Electronic energy + Delta-G solvation = -27506.768535 eV Core-core repulsion = 23545.619816 eV Total energy + Delta-G solvation = -3961.148719 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.49316 -40.46211 -38.99661 -38.54048 -37.70809 -37.05073 -34.94501 -33.33939 -33.11761 -32.77055 -28.03679 -27.85179 -27.36340 -26.54100 -24.75446 -23.79119 -21.18909 -21.00977 -20.39968 -19.96846 -18.94795 -18.81331 -18.40818 -17.96833 -17.36547 -17.01200 -16.51891 -16.31535 -15.77658 -15.64749 -15.44736 -14.80981 -14.54409 -14.49480 -14.16039 -13.84974 -13.76322 -13.39951 -13.32867 -13.23332 -13.16235 -13.13429 -12.79997 -12.50913 -12.37793 -12.33668 -12.11309 -11.99470 -11.92652 -11.73113 -11.01075 -10.92593 -10.75326 -10.62461 -10.52268 -10.26102 -8.29038 -6.29729 -1.58630 -0.79215 -0.47586 0.12901 0.14219 1.35553 1.40584 1.49746 1.80798 2.05055 2.35106 2.52468 2.98065 3.08062 3.37928 3.58222 3.77806 3.81628 3.94844 3.98074 4.30021 4.34202 4.40916 4.44512 4.50208 4.78344 4.80613 4.85982 4.89108 4.94404 4.98717 5.03823 5.09331 5.24770 5.34724 5.48558 5.72181 5.79588 6.07565 6.31116 6.38432 6.74663 7.36068 8.87091 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.015845 B = 0.004669 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.701190 B = 5995.125334 C = 6038.844863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.030 3.970 3 C -0.149 4.149 4 C -0.508 4.508 5 H 0.043 0.957 6 C 0.022 3.978 7 N -0.943 5.943 8 Si 0.937 3.063 9 H -0.284 1.284 10 H -0.316 1.316 11 H -0.217 1.217 12 C 0.148 3.852 13 N -1.093 6.093 14 S 2.709 3.291 15 O -0.975 6.975 16 O -0.972 6.972 17 C -0.648 4.648 18 C -0.027 4.027 19 C -0.072 4.072 20 C -0.051 4.051 21 C -0.068 4.068 22 C 0.015 3.985 23 N 0.016 4.984 24 O -0.135 6.135 25 O -0.184 6.184 26 H 0.055 0.945 27 H 0.042 0.958 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.032 0.968 31 H 0.067 0.933 32 H 0.263 0.737 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.427 0.573 36 H 0.175 0.825 37 H 0.199 0.801 38 H 0.205 0.795 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.548 -2.822 20.258 22.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.028 3.972 3 C -0.206 4.206 4 C -0.547 4.547 5 H 0.061 0.939 6 C -0.175 4.175 7 N -0.583 5.583 8 Si 0.768 3.232 9 H -0.212 1.212 10 H -0.246 1.246 11 H -0.141 1.141 12 C 0.022 3.978 13 N -0.859 5.859 14 S 2.796 3.204 15 O -0.965 6.965 16 O -0.963 6.963 17 C -0.734 4.734 18 C -0.047 4.047 19 C -0.090 4.090 20 C -0.069 4.069 21 C -0.087 4.087 22 C -0.068 4.068 23 N 0.532 4.468 24 O -0.358 6.358 25 O -0.389 6.389 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.267 0.733 36 H 0.192 0.808 37 H 0.217 0.783 38 H 0.222 0.778 39 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 9.028 -3.900 20.702 22.919 hybrid contribution 0.116 1.598 -1.107 1.947 sum 9.143 -2.303 19.595 21.745 Atomic orbital electron populations 1.22236 0.96692 1.00828 1.00384 1.18610 0.93497 0.92792 0.92345 1.22308 1.00859 0.97525 0.99872 1.21050 1.34017 1.09587 0.90042 0.93881 1.25702 0.95460 1.00892 0.95493 1.70065 1.51013 1.38411 0.98811 0.86404 0.79590 0.80874 0.76315 1.21218 1.24595 1.14103 1.21175 0.97415 0.95639 0.83566 1.55380 1.79439 1.29116 1.21934 1.01356 0.73673 0.72557 0.72766 1.93566 1.71493 1.45317 1.86166 1.93585 1.80930 1.61310 1.60442 1.30855 1.26113 1.00733 1.15741 1.21602 0.99776 0.92433 0.90879 1.22403 0.91020 1.03507 0.92075 1.22205 1.03295 0.89205 0.92190 1.21728 0.91967 1.01344 0.93695 1.20787 0.97272 0.78632 1.10112 1.44040 1.00432 1.04164 0.98210 1.94478 1.49221 1.39633 1.52461 1.94480 1.05526 1.89540 1.49360 0.92581 0.93946 0.93318 0.93312 0.95003 0.91436 0.92760 0.92716 0.90963 0.73329 0.80801 0.78343 0.77791 0.80289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.92 7.45 71.98 0.54 -5.39 16 2 C 0.03 1.29 0.52 -52.93 -0.03 1.26 16 3 C -0.15 -6.02 7.48 71.98 0.54 -5.48 16 4 C -0.51 -27.25 8.62 25.60 0.22 -27.03 16 5 H 0.04 2.52 7.99 -2.91 -0.02 2.49 16 6 C 0.02 1.25 5.33 84.65 0.45 1.70 16 7 N -0.94 -57.63 13.96 21.45 0.30 -57.33 16 8 Si 0.94 44.33 22.71 68.60 1.56 45.88 16 9 H -0.28 -13.24 7.07 99.48 0.70 -12.54 16 10 H -0.32 -15.36 7.11 99.48 0.71 -14.66 16 11 H -0.22 -9.13 4.73 99.48 0.47 -8.66 16 12 C 0.15 5.47 4.97 86.38 0.43 5.90 16 13 N -1.09 -36.18 3.95 -187.49 -0.74 -36.92 16 14 S 2.71 85.34 4.88 -56.49 -0.28 85.07 16 15 O -0.98 -33.31 16.57 -128.00 -2.12 -35.43 16 16 O -0.97 -35.22 15.57 -118.48 -1.84 -37.06 16 17 C -0.65 -16.10 5.79 22.27 0.13 -15.98 16 18 C -0.03 -0.46 9.55 22.27 0.21 -0.25 16 19 C -0.07 -0.59 10.05 22.27 0.22 -0.37 16 20 C -0.05 -0.36 10.05 22.27 0.22 -0.14 16 21 C -0.07 -1.01 9.56 22.27 0.21 -0.79 16 22 C 0.02 0.37 6.81 36.37 0.25 0.62 16 23 N 0.02 0.49 4.45 -46.46 -0.21 0.28 16 24 O -0.14 -3.97 18.47 18.89 0.35 -3.62 16 25 O -0.18 -6.28 11.67 26.28 0.31 -5.97 16 26 H 0.06 1.98 7.63 -2.39 -0.02 1.96 16 27 H 0.04 1.83 4.50 -2.39 -0.01 1.82 16 28 H 0.05 1.96 8.07 -2.39 -0.02 1.94 16 29 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 30 H 0.03 1.35 2.15 -2.38 -0.01 1.34 16 31 H 0.07 2.34 6.57 -2.39 -0.02 2.33 16 32 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 33 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.07 2.69 7.81 -2.38 -0.02 2.67 16 35 H 0.43 13.77 5.38 -96.74 -0.52 13.25 16 36 H 0.17 2.59 7.35 -2.91 -0.02 2.57 16 37 H 0.20 -0.14 8.06 -2.91 -0.02 -0.17 16 38 H 0.21 -0.51 8.06 -2.91 -0.02 -0.53 16 39 H 0.18 1.92 7.63 -2.91 -0.02 1.90 16 Total: -1.00 -78.03 323.10 1.07 -76.96 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.35 Total: 14.09 kcal Atomic # 6 Polarization: -49.34 SS G_CDS: 3.40 Total: -45.94 kcal Atomic # 7 Polarization: -93.33 SS G_CDS: -0.65 Total: -93.97 kcal Atomic # 8 Polarization: -78.77 SS G_CDS: -3.31 Total: -82.08 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.56 Total: 45.88 kcal Atomic # 16 Polarization: 85.34 SS G_CDS: -0.28 Total: 85.07 kcal Total: -78.03 1.07 -76.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315478138.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.535 kcal (2) G-P(sol) polarization free energy of solvation -78.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds