Wall clock time and date at job start Tue Mar 31 2020 15:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38265 * 119.99598 * 2 1 4 4 C 1.38211 * 119.99787 * 180.02562 * 3 2 1 5 5 N 1.48020 * 120.00287 * 180.02562 * 4 3 2 6 6 O 1.21805 * 119.99333 * 6.41031 * 5 4 3 7 7 O 1.21793 * 120.00426 * 186.41902 * 5 4 3 8 8 C 1.38258 * 119.99977 * 0.02562 * 4 3 2 9 9 C 1.50704 * 120.00044 * 179.97438 * 8 4 3 10 10 C 1.38208 * 120.00150 * 359.97438 * 8 4 3 11 11 S 1.76207 * 120.00265 * 179.97438 * 10 8 4 12 12 O 1.42099 * 106.40383 * 179.04691 * 11 10 8 13 13 O 1.42103 * 106.39974 * 311.96950 * 11 10 8 14 14 N 1.65602 * 107.21464 * 65.50506 * 11 10 8 15 15 C 1.46502 * 120.00025 * 65.63143 * 14 11 10 16 16 H 1.08998 * 109.47073 * 25.08217 * 15 14 11 17 17 C 1.52995 * 109.47083 * 265.08122 * 15 14 11 18 18 C 1.50698 * 109.46880 * 145.07845 * 15 14 11 19 19 H 1.07994 * 120.00350 * 0.02562 * 18 15 14 20 20 C 1.37885 * 119.99745 * 179.97438 * 18 15 14 21 21 N 1.31509 * 120.00075 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 119.99889 * 180.02562 * 20 18 15 23 23 H 1.48504 * 109.47210 * 59.99948 * 22 20 18 24 24 H 1.48499 * 109.47227 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47131 * 300.00112 * 22 20 18 26 26 C 1.38213 * 120.00323 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.47076 * 269.95456 * 1 2 3 28 28 H 1.08994 * 109.47179 * 29.95446 * 1 2 3 29 29 H 1.09001 * 109.46618 * 149.95245 * 1 2 3 30 30 H 1.07995 * 119.99735 * 0.08756 * 3 2 1 31 31 H 1.08994 * 109.47246 * 276.38382 * 9 8 4 32 32 H 1.09007 * 109.46664 * 36.38505 * 9 8 4 33 33 H 1.09000 * 109.47054 * 156.38368 * 9 8 4 34 34 H 0.96998 * 119.99854 * 245.62566 * 14 11 10 35 35 H 1.08998 * 109.47106 * 294.84230 * 17 15 14 36 36 H 1.09001 * 109.47124 * 54.84458 * 17 15 14 37 37 H 1.09003 * 109.46717 * 174.83853 * 17 15 14 38 38 H 0.96997 * 120.00319 * 179.97438 * 21 20 18 39 39 H 1.08002 * 119.99811 * 0.26406 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1975 0.0000 4 6 3.5804 1.1975 -0.0005 5 7 4.3205 2.4794 0.0000 6 8 3.7171 3.5308 0.1188 7 8 5.5327 2.4828 -0.1183 8 6 4.2717 0.0002 -0.0016 9 6 5.7788 0.0002 -0.0028 10 6 3.5807 -1.1968 -0.0016 11 16 4.4618 -2.7228 -0.0037 12 8 3.4821 -3.7518 0.0195 13 8 5.4507 -2.6137 -1.0183 14 7 5.2765 -2.8202 1.4348 15 6 4.5324 -2.9245 2.6925 16 1 3.5519 -3.3597 2.4995 17 6 4.3612 -1.5311 3.3007 18 6 5.2913 -3.8025 3.6538 19 1 6.2338 -4.2389 3.3577 20 6 4.7828 -4.0479 4.9117 21 7 3.6354 -3.5161 5.2724 22 14 5.7239 -5.1357 6.1036 23 1 7.0598 -4.5426 6.3660 24 1 4.9696 -5.2415 7.3784 25 1 5.8900 -6.4884 5.5137 26 6 2.1982 -1.1969 -0.0005 27 1 -0.3633 -0.0008 1.0276 28 1 -0.3633 0.8903 -0.5131 29 1 -0.3632 -0.8896 -0.5146 30 1 1.6582 2.1327 0.0014 31 1 6.1413 0.1149 -1.0242 32 1 6.1425 0.8273 0.6070 33 1 6.1424 -0.9416 0.4082 34 1 6.2464 -2.8084 1.4446 35 1 5.3374 -1.1333 3.5781 36 1 3.8940 -0.8707 2.5702 37 1 3.7302 -1.5967 4.1871 38 1 3.2775 -3.6890 6.1572 39 1 1.6582 -2.1323 -0.0053 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351846370.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:35 Heat of formation + Delta-G solvation = -53.124152 kcal Electronic energy + Delta-G solvation = -27035.652640 eV Core-core repulsion = 23073.866473 eV Total energy + Delta-G solvation = -3961.786167 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.33434 -39.89023 -37.09993 -36.72534 -35.74477 -35.59541 -34.31797 -32.37085 -32.25950 -29.74985 -28.50152 -27.00863 -25.39639 -25.14798 -23.48871 -21.97951 -21.13906 -19.35883 -18.71397 -18.48998 -17.69395 -17.59434 -16.76590 -16.59150 -16.19474 -15.90371 -15.30043 -14.67683 -14.46083 -13.81129 -13.56388 -13.52787 -13.16615 -12.86576 -12.73657 -12.51826 -12.40620 -12.28870 -12.14485 -11.94181 -11.81635 -11.72988 -11.46000 -11.35126 -11.20238 -11.06243 -11.00918 -10.78776 -10.59617 -10.49503 -10.22064 -10.01737 -9.38185 -9.16753 -8.79946 -8.46486 -6.24052 -4.31369 -0.27179 0.36987 0.69946 1.18670 1.30998 2.79745 3.21834 3.26790 3.28309 3.40726 3.93591 4.03504 4.17964 4.27527 4.40598 4.53019 4.57369 4.85958 4.95466 5.09578 5.16521 5.22610 5.30158 5.47470 5.50927 5.62584 5.70798 5.81047 5.95256 6.02592 6.12208 6.45246 6.58064 6.61103 6.82006 7.39497 7.49236 7.60886 7.67315 7.84053 8.10027 8.70672 9.35193 10.82631 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.013552 B = 0.004450 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.587234 B = 6291.115820 C = 6420.325421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.111 4.111 3 C -0.009 4.009 4 C -0.068 4.068 5 N 0.037 4.963 6 O -0.171 6.171 7 O -0.154 6.154 8 C 0.089 3.911 9 C -0.156 4.156 10 C -0.672 4.672 11 S 2.691 3.309 12 O -0.952 6.952 13 O -0.968 6.968 14 N -1.094 6.094 15 C 0.268 3.732 16 H 0.053 0.947 17 C -0.156 4.156 18 C -0.523 4.523 19 H 0.066 0.934 20 C 0.066 3.934 21 N -0.889 5.889 22 Si 0.904 3.096 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.275 1.275 26 C 0.035 3.965 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.157 0.843 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.413 0.587 35 H 0.038 0.962 36 H 0.005 0.995 37 H 0.093 0.907 38 H 0.266 0.734 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.358 7.755 -9.637 13.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.113 4.113 3 C -0.028 4.028 4 C -0.153 4.153 5 N 0.554 4.446 6 O -0.384 6.384 7 O -0.369 6.369 8 C 0.086 3.914 9 C -0.212 4.212 10 C -0.754 4.754 11 S 2.776 3.224 12 O -0.942 6.942 13 O -0.958 6.958 14 N -0.857 5.857 15 C 0.164 3.836 16 H 0.070 0.930 17 C -0.216 4.216 18 C -0.563 4.563 19 H 0.084 0.916 20 C -0.138 4.138 21 N -0.527 5.527 22 Si 0.731 3.269 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.200 1.200 26 C 0.016 3.984 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.174 0.826 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.097 0.903 34 H 0.248 0.752 35 H 0.058 0.942 36 H 0.024 0.976 37 H 0.111 0.889 38 H 0.076 0.924 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.089 6.596 -10.148 13.129 hybrid contribution 0.703 0.601 1.118 1.451 sum -4.385 7.198 -9.030 12.352 Atomic orbital electron populations 1.20847 0.88644 1.03813 1.03741 1.20006 0.97587 0.91428 1.02274 1.21093 0.90865 1.00401 0.90474 1.20931 0.92581 0.83375 1.18377 1.43443 1.01128 1.02510 0.97553 1.94521 1.70147 1.19947 1.53770 1.94482 0.96076 1.93678 1.52674 1.19381 0.97696 0.89225 0.85072 1.21740 0.87730 1.05773 1.05948 1.31505 1.06545 1.20288 1.17088 1.02151 0.73689 0.73307 0.73270 1.93581 1.62100 1.51863 1.86674 1.93580 1.58454 1.86943 1.56775 1.55599 1.18072 1.89221 1.22811 1.18673 0.92274 0.93696 0.78917 0.92973 1.22300 1.01056 0.96588 1.01646 1.21133 1.07335 1.29971 0.97883 0.91557 1.24912 0.95039 0.95839 0.97979 1.69844 1.18403 1.43714 1.20704 0.86469 0.79722 0.80886 0.79837 1.20098 1.21150 1.20012 1.21377 0.91992 0.99840 0.85181 0.89858 0.90775 0.90278 0.82587 0.87305 0.87034 0.90335 0.75225 0.94248 0.97582 0.88875 0.92423 0.82032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.01 36.01 0.36 -0.52 16 2 C -0.11 -1.26 5.88 -104.62 -0.62 -1.87 16 3 C -0.01 -0.11 9.21 -39.58 -0.36 -0.47 16 4 C -0.07 -0.98 6.83 -79.95 -0.55 -1.53 16 5 N 0.04 0.56 4.45 33.96 0.15 0.71 16 6 O -0.17 -2.59 18.47 -29.46 -0.54 -3.13 16 7 O -0.15 -2.36 15.35 -29.46 -0.45 -2.81 16 8 C 0.09 1.33 5.41 -104.62 -0.57 0.76 16 9 C -0.16 -2.20 7.63 36.01 0.27 -1.93 16 10 C -0.67 -10.29 4.77 -39.59 -0.19 -10.48 16 11 S 2.69 46.67 4.92 -107.50 -0.53 46.14 16 12 O -0.95 -18.85 16.28 -57.17 -0.93 -19.78 16 13 O -0.97 -17.30 16.29 -57.17 -0.93 -18.23 16 14 N -1.09 -20.23 4.46 -5.88 -0.03 -20.25 16 15 C 0.27 6.00 2.90 -69.08 -0.20 5.80 16 16 H 0.05 1.27 7.48 -51.93 -0.39 0.89 16 17 C -0.16 -3.35 9.21 37.15 0.34 -3.01 16 18 C -0.52 -13.05 8.76 -34.44 -0.30 -13.36 16 19 H 0.07 1.60 7.81 -52.49 -0.41 1.19 16 20 C 0.07 1.67 5.30 -17.82 -0.09 1.58 16 21 N -0.89 -23.38 11.38 55.43 0.63 -22.75 16 22 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 23 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 C 0.04 0.47 9.20 -39.58 -0.36 0.11 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 29 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 30 H 0.16 1.48 7.62 -52.49 -0.40 1.08 16 31 H 0.11 1.42 8.14 -51.93 -0.42 0.99 16 32 H 0.11 1.52 5.83 -51.93 -0.30 1.22 16 33 H 0.08 1.10 4.73 -51.93 -0.25 0.85 16 34 H 0.41 6.80 8.40 -34.47 -0.29 6.51 16 35 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.01 0.10 6.46 -51.93 -0.34 -0.24 16 37 H 0.09 2.22 6.22 -51.93 -0.32 1.90 16 38 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 39 H 0.16 1.97 7.33 -52.49 -0.38 1.58 16 LS Contribution 338.40 15.07 5.10 5.10 Total: -1.00 -29.95 338.40 -9.14 -39.09 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -4.32 Total: 5.90 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: -2.26 Total: -24.92 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.76 Total: -42.30 kcal Atomic # 8 Polarization: -41.10 SS G_CDS: -2.86 Total: -43.96 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 16 Polarization: 46.67 SS G_CDS: -0.53 Total: 46.14 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.95 -9.14 -39.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351846370.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.035 kcal (2) G-P(sol) polarization free energy of solvation -29.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds