Wall clock time and date at job start Tue Mar 31 2020 15:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38258 * 120.00172 * 2 1 4 4 C 1.38209 * 120.00038 * 180.02562 * 3 2 1 5 5 N 1.48018 * 119.99599 * 179.97438 * 4 3 2 6 6 O 1.21798 * 120.00124 * 356.28758 * 5 4 3 7 7 O 1.21805 * 119.99536 * 176.29514 * 5 4 3 8 8 C 1.38258 * 120.00199 * 359.74159 * 4 3 2 9 9 C 1.50701 * 119.99982 * 180.27552 * 8 4 3 10 10 C 1.38215 * 119.99849 * 0.53151 * 8 4 3 11 11 S 1.76200 * 119.99942 * 179.74418 * 10 8 4 12 12 O 1.42100 * 106.39994 * 311.04790 * 11 10 8 13 13 O 1.42102 * 106.40109 * 178.12997 * 11 10 8 14 14 N 1.65599 * 107.21927 * 64.59051 * 11 10 8 15 15 C 1.46501 * 119.99996 * 65.30838 * 14 11 10 16 16 H 1.08998 * 109.46867 * 334.74158 * 15 14 11 17 17 C 1.53000 * 109.47253 * 94.74164 * 15 14 11 18 18 C 1.50699 * 109.46900 * 214.74348 * 15 14 11 19 19 H 1.07998 * 120.00198 * 0.02562 * 18 15 14 20 20 C 1.37879 * 119.99830 * 179.97438 * 18 15 14 21 21 N 1.31514 * 120.00118 * 0.02562 * 20 18 15 22 22 Si 1.86799 * 120.00023 * 179.97438 * 20 18 15 23 23 H 1.48502 * 109.47312 * 60.00197 * 22 20 18 24 24 H 1.48499 * 109.47201 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47046 * 300.00004 * 22 20 18 26 26 C 1.38218 * 120.00152 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.47294 * 269.97984 * 1 2 3 28 28 H 1.09001 * 109.47150 * 29.98268 * 1 2 3 29 29 H 1.09003 * 109.46800 * 149.98414 * 1 2 3 30 30 H 1.08004 * 119.99528 * 359.97165 * 3 2 1 31 31 H 1.09003 * 109.47034 * 277.14315 * 9 8 4 32 32 H 1.08992 * 109.47173 * 37.14897 * 9 8 4 33 33 H 1.09000 * 109.46822 * 157.14722 * 9 8 4 34 34 H 0.97003 * 119.99704 * 245.31129 * 14 11 10 35 35 H 1.08999 * 109.46695 * 60.00001 * 17 15 14 36 36 H 1.08994 * 109.47148 * 300.00213 * 17 15 14 37 37 H 1.08998 * 109.47214 * 179.97438 * 17 15 14 38 38 H 0.96998 * 120.00094 * 180.02562 * 21 20 18 39 39 H 1.08004 * 119.99513 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 7 4.3205 2.4792 -0.0011 6 8 3.7133 3.5329 -0.0694 7 8 5.5366 2.4803 0.0666 8 6 4.2717 0.0000 0.0043 9 6 5.7787 0.0000 0.0100 10 6 3.5807 -1.1970 -0.0014 11 16 4.4617 -2.7229 -0.0020 12 8 5.4415 -2.6201 -1.0261 13 8 3.4823 -3.7518 0.0361 14 7 5.2892 -2.8118 1.4297 15 6 4.5563 -2.9013 2.6950 16 1 3.5666 -2.4612 2.5735 17 6 4.4151 -4.3700 3.0999 18 6 5.3098 -2.1552 3.7658 19 1 6.2412 -1.6632 3.5275 20 6 4.8096 -2.0999 5.0494 21 7 3.6751 -2.6985 5.3395 22 14 5.7439 -1.1757 6.3769 23 1 5.8820 0.2497 5.9840 24 1 5.0010 -1.2663 7.6595 25 1 7.0919 -1.7763 6.5428 26 6 2.1981 -1.1970 -0.0005 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3633 0.8901 -0.5136 29 1 -0.3633 -0.8899 -0.5141 30 1 1.6583 2.1326 -0.0005 31 1 6.1459 0.1259 -1.0086 32 1 6.1397 0.8202 0.6304 33 1 6.1405 -0.9462 0.4123 34 1 6.2592 -2.8045 1.4304 35 1 5.4049 -4.8101 3.2213 36 1 3.8702 -4.9096 2.3254 37 1 3.8702 -4.4366 4.0415 38 1 3.3230 -2.6593 6.2424 39 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351846371.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:39 Heat of formation + Delta-G solvation = -52.738556 kcal Electronic energy + Delta-G solvation = -27076.998052 eV Core-core repulsion = 23115.228606 eV Total energy + Delta-G solvation = -3961.769446 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.26596 -39.81065 -37.09202 -36.67272 -35.70521 -35.58774 -34.26486 -32.36883 -32.22207 -29.68941 -28.42489 -26.95286 -25.33730 -25.09213 -23.43704 -21.95370 -21.11952 -19.33956 -18.65995 -18.42807 -17.64258 -17.53212 -16.67740 -16.60909 -16.09524 -15.98111 -15.30659 -14.68196 -14.39891 -13.77921 -13.51132 -13.45293 -13.10748 -12.79083 -12.70005 -12.50399 -12.35179 -12.28958 -12.07753 -11.88033 -11.85366 -11.71264 -11.37992 -11.28063 -11.12140 -11.06460 -10.97642 -10.71640 -10.50429 -10.39471 -10.24187 -9.97101 -9.36119 -9.11685 -8.77004 -8.47229 -6.25489 -4.34601 -0.21058 0.43163 0.73119 1.25595 1.37984 2.85855 3.18991 3.24268 3.25857 3.40867 3.94527 4.09818 4.24431 4.25460 4.46879 4.57702 4.63369 4.89814 5.01109 5.06719 5.21808 5.28712 5.34044 5.52262 5.58957 5.67586 5.78770 5.85837 6.00921 6.09721 6.13911 6.56946 6.67445 6.91172 6.95012 7.43488 7.54411 7.63479 7.68332 7.89730 8.11844 8.68391 9.32907 10.79926 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.009943 B = 0.005829 C = 0.004916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.452042 B = 4802.217949 C = 5694.577540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.113 4.113 3 C -0.008 4.008 4 C -0.069 4.069 5 N 0.038 4.962 6 O -0.171 6.171 7 O -0.154 6.154 8 C 0.093 3.907 9 C -0.162 4.162 10 C -0.672 4.672 11 S 2.692 3.308 12 O -0.969 6.969 13 O -0.955 6.955 14 N -1.095 6.095 15 C 0.275 3.725 16 H 0.039 0.961 17 C -0.158 4.158 18 C -0.530 4.530 19 H 0.066 0.934 20 C 0.067 3.933 21 N -0.886 5.886 22 Si 0.898 3.102 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.035 3.965 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.157 0.843 31 H 0.104 0.896 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.413 0.587 35 H 0.034 0.966 36 H 0.026 0.974 37 H 0.093 0.907 38 H 0.266 0.734 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.417 4.297 -9.885 11.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.115 4.115 3 C -0.027 4.027 4 C -0.153 4.153 5 N 0.555 4.445 6 O -0.384 6.384 7 O -0.369 6.369 8 C 0.091 3.909 9 C -0.218 4.218 10 C -0.756 4.756 11 S 2.777 3.223 12 O -0.959 6.959 13 O -0.945 6.945 14 N -0.858 5.858 15 C 0.172 3.828 16 H 0.056 0.944 17 C -0.218 4.218 18 C -0.569 4.569 19 H 0.084 0.916 20 C -0.137 4.137 21 N -0.523 5.523 22 Si 0.726 3.274 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.199 1.199 26 C 0.016 3.984 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.174 0.826 31 H 0.122 0.878 32 H 0.139 0.861 33 H 0.098 0.902 34 H 0.248 0.752 35 H 0.053 0.947 36 H 0.045 0.955 37 H 0.111 0.889 38 H 0.076 0.924 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.147 3.086 -10.389 11.997 hybrid contribution 0.715 1.601 1.216 2.134 sum -4.432 4.686 -9.172 11.213 Atomic orbital electron populations 1.20839 0.88679 1.03762 1.03701 1.19989 0.97558 0.91460 1.02506 1.21093 0.90885 1.00402 0.90286 1.20926 0.92575 0.83405 1.18409 1.43443 1.01184 1.02496 0.97349 1.94510 1.70150 1.19774 1.53951 1.94458 0.95714 1.93704 1.53030 1.19396 0.97776 0.89208 0.84540 1.21837 0.87705 1.06544 1.05751 1.31422 1.06468 1.20230 1.17438 1.02113 0.73621 0.73346 0.73178 1.93577 1.59029 1.86990 1.56294 1.93572 1.62143 1.52010 1.86746 1.55648 1.18167 1.89406 1.22610 1.18565 0.91223 0.94282 0.78765 0.94365 1.22237 1.00258 0.96730 1.02559 1.21234 1.08448 1.33607 0.93643 0.91622 1.24904 0.95011 0.95301 0.98466 1.69855 1.19099 1.42534 1.20842 0.86547 0.79975 0.80271 0.80633 1.20159 1.21101 1.19921 1.21362 0.91999 0.99791 0.85263 0.89911 0.90773 0.90330 0.82567 0.87755 0.86110 0.90206 0.75219 0.94659 0.95517 0.88874 0.92404 0.82101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.01 36.01 0.36 -0.58 16 2 C -0.11 -1.37 5.88 -104.62 -0.62 -1.99 16 3 C -0.01 -0.10 9.21 -39.58 -0.36 -0.46 16 4 C -0.07 -1.06 6.84 -79.95 -0.55 -1.61 16 5 N 0.04 0.62 4.45 33.96 0.15 0.77 16 6 O -0.17 -2.72 18.45 -29.46 -0.54 -3.26 16 7 O -0.15 -2.54 15.26 -29.46 -0.45 -2.99 16 8 C 0.09 1.50 5.87 -104.62 -0.61 0.89 16 9 C -0.16 -2.47 7.81 36.01 0.28 -2.19 16 10 C -0.67 -10.82 5.76 -39.58 -0.23 -11.05 16 11 S 2.69 46.74 4.84 -107.50 -0.52 46.22 16 12 O -0.97 -17.41 16.36 -57.17 -0.94 -18.35 16 13 O -0.95 -18.28 16.20 -57.17 -0.93 -19.21 16 14 N -1.10 -20.26 4.42 -5.88 -0.03 -20.29 16 15 C 0.28 6.17 2.76 -69.08 -0.19 5.98 16 16 H 0.04 0.91 7.87 -51.93 -0.41 0.50 16 17 C -0.16 -3.57 9.29 37.16 0.35 -3.23 16 18 C -0.53 -12.98 8.76 -34.44 -0.30 -13.28 16 19 H 0.07 1.55 7.81 -52.49 -0.41 1.14 16 20 C 0.07 1.69 5.30 -17.82 -0.09 1.60 16 21 N -0.89 -23.21 11.32 55.43 0.63 -22.59 16 22 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 C 0.03 0.49 9.20 -39.58 -0.36 0.13 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 29 H 0.08 0.56 8.09 -51.93 -0.42 0.14 16 30 H 0.16 1.61 7.62 -52.48 -0.40 1.21 16 31 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 32 H 0.12 1.82 5.56 -51.93 -0.29 1.53 16 33 H 0.08 1.20 4.66 -51.93 -0.24 0.96 16 34 H 0.41 6.81 8.38 -34.47 -0.29 6.52 16 35 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.03 0.56 7.61 -51.93 -0.40 0.17 16 37 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 38 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 39 H 0.16 2.01 7.34 -52.48 -0.38 1.62 16 LS Contribution 340.69 15.07 5.13 5.13 Total: -1.00 -29.74 340.69 -9.22 -38.96 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -4.38 Total: 6.45 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: -2.33 Total: -25.80 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.75 Total: -42.10 kcal Atomic # 8 Polarization: -40.95 SS G_CDS: -2.85 Total: -43.80 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 16 Polarization: 46.74 SS G_CDS: -0.52 Total: 46.22 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.74 -9.22 -38.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351846371.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.782 kcal (2) G-P(sol) polarization free energy of solvation -29.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds