Wall clock time and date at job start Tue Mar 31 2020 15:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38258 * 120.00172 * 2 1 4 4 C 1.38209 * 120.00038 * 180.02562 * 3 2 1 5 5 N 1.48018 * 119.99599 * 179.97438 * 4 3 2 6 6 O 1.21798 * 120.00124 * 356.28758 * 5 4 3 7 7 O 1.21805 * 119.99536 * 176.29514 * 5 4 3 8 8 C 1.38258 * 120.00199 * 359.74159 * 4 3 2 9 9 C 1.50701 * 119.99982 * 180.27552 * 8 4 3 10 10 C 1.38215 * 119.99849 * 0.53151 * 8 4 3 11 11 S 1.76200 * 119.99942 * 179.74418 * 10 8 4 12 12 O 1.42100 * 106.39994 * 311.04790 * 11 10 8 13 13 O 1.42102 * 106.40109 * 178.12997 * 11 10 8 14 14 N 1.65599 * 107.21927 * 64.59051 * 11 10 8 15 15 C 1.46501 * 119.99996 * 65.30838 * 14 11 10 16 16 H 1.08998 * 109.46867 * 334.74158 * 15 14 11 17 17 C 1.53000 * 109.47253 * 94.74164 * 15 14 11 18 18 C 1.50699 * 109.46900 * 214.74348 * 15 14 11 19 19 H 1.07998 * 120.00198 * 0.02562 * 18 15 14 20 20 C 1.37879 * 119.99830 * 179.97438 * 18 15 14 21 21 N 1.31514 * 120.00118 * 0.02562 * 20 18 15 22 22 Si 1.86799 * 120.00023 * 179.97438 * 20 18 15 23 23 H 1.48502 * 109.47312 * 60.00197 * 22 20 18 24 24 H 1.48499 * 109.47201 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47046 * 300.00004 * 22 20 18 26 26 C 1.38218 * 120.00152 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.47294 * 269.97984 * 1 2 3 28 28 H 1.09001 * 109.47150 * 29.98268 * 1 2 3 29 29 H 1.09003 * 109.46800 * 149.98414 * 1 2 3 30 30 H 1.08004 * 119.99528 * 359.97165 * 3 2 1 31 31 H 1.09003 * 109.47034 * 277.14315 * 9 8 4 32 32 H 1.08992 * 109.47173 * 37.14897 * 9 8 4 33 33 H 1.09000 * 109.46822 * 157.14722 * 9 8 4 34 34 H 0.97003 * 119.99704 * 245.31129 * 14 11 10 35 35 H 1.08999 * 109.46695 * 60.00001 * 17 15 14 36 36 H 1.08994 * 109.47148 * 300.00213 * 17 15 14 37 37 H 1.08998 * 109.47214 * 179.97438 * 17 15 14 38 38 H 0.96998 * 120.00094 * 180.02562 * 21 20 18 39 39 H 1.08004 * 119.99513 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 7 4.3205 2.4792 -0.0011 6 8 3.7133 3.5329 -0.0694 7 8 5.5366 2.4803 0.0666 8 6 4.2717 0.0000 0.0043 9 6 5.7787 0.0000 0.0100 10 6 3.5807 -1.1970 -0.0014 11 16 4.4617 -2.7229 -0.0020 12 8 5.4415 -2.6201 -1.0261 13 8 3.4823 -3.7518 0.0361 14 7 5.2892 -2.8118 1.4297 15 6 4.5563 -2.9013 2.6950 16 1 3.5666 -2.4612 2.5735 17 6 4.4151 -4.3700 3.0999 18 6 5.3098 -2.1552 3.7658 19 1 6.2412 -1.6632 3.5275 20 6 4.8096 -2.0999 5.0494 21 7 3.6751 -2.6985 5.3395 22 14 5.7439 -1.1757 6.3769 23 1 5.8820 0.2497 5.9840 24 1 5.0010 -1.2663 7.6595 25 1 7.0919 -1.7763 6.5428 26 6 2.1981 -1.1970 -0.0005 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3633 0.8901 -0.5136 29 1 -0.3633 -0.8899 -0.5141 30 1 1.6583 2.1326 -0.0005 31 1 6.1459 0.1259 -1.0086 32 1 6.1397 0.8202 0.6304 33 1 6.1405 -0.9462 0.4123 34 1 6.2592 -2.8045 1.4304 35 1 5.4049 -4.8101 3.2213 36 1 3.8702 -4.9096 2.3254 37 1 3.8702 -4.4366 4.0415 38 1 3.3230 -2.6593 6.2424 39 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351846371.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:38 Heat of formation + Delta-G solvation = -70.886644 kcal Electronic energy + Delta-G solvation = -27077.785012 eV Core-core repulsion = 23115.228606 eV Total energy + Delta-G solvation = -3962.556406 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.48168 -40.91655 -38.52691 -37.92340 -37.38702 -37.05351 -35.33310 -34.17513 -33.37199 -30.73846 -30.10171 -28.05455 -27.24851 -26.13034 -24.61796 -23.13784 -22.85701 -20.66506 -19.97672 -19.61131 -19.17054 -18.81075 -18.13589 -17.87537 -17.47967 -17.17266 -16.95916 -16.22785 -15.55261 -15.30714 -14.56469 -14.46208 -14.42494 -14.24559 -14.06500 -13.81230 -13.58195 -13.55141 -13.36103 -13.19187 -13.07455 -13.05611 -13.01053 -12.84194 -12.60544 -12.46170 -12.36616 -12.26744 -12.19320 -12.04064 -11.71792 -11.15825 -11.14644 -10.61399 -10.19204 -10.14994 -8.17312 -6.30756 -1.37751 -0.79214 -0.57105 0.08769 0.19521 1.42830 1.44610 1.50396 1.72455 2.00748 2.41401 2.57490 3.03464 3.12846 3.13185 3.29814 3.47746 3.61505 3.80173 3.98603 4.12054 4.35320 4.40408 4.43861 4.47843 4.64403 4.76156 4.80327 4.88617 4.88987 5.01241 5.09129 5.14888 5.23530 5.41055 5.56849 5.72537 5.99855 6.03623 6.35021 6.44125 6.79369 7.39086 8.87459 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.009943 B = 0.005829 C = 0.004916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.452042 B = 4802.217949 C = 5694.577540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.102 4.102 3 C -0.003 4.003 4 C -0.084 4.084 5 N 0.038 4.962 6 O -0.162 6.162 7 O -0.177 6.177 8 C 0.076 3.924 9 C -0.166 4.166 10 C -0.687 4.687 11 S 2.710 3.290 12 O -0.976 6.976 13 O -0.974 6.974 14 N -1.096 6.096 15 C 0.281 3.719 16 H 0.025 0.975 17 C -0.153 4.153 18 C -0.539 4.539 19 H 0.069 0.931 20 C 0.024 3.976 21 N -0.910 5.910 22 Si 0.951 3.049 23 H -0.277 1.277 24 H -0.285 1.285 25 H -0.269 1.269 26 C 0.024 3.976 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.186 0.814 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.076 0.924 34 H 0.420 0.580 35 H 0.039 0.961 36 H 0.033 0.967 37 H 0.072 0.928 38 H 0.265 0.735 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.479 5.237 -10.271 12.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.104 4.104 3 C -0.021 4.021 4 C -0.168 4.168 5 N 0.553 4.447 6 O -0.378 6.378 7 O -0.386 6.386 8 C 0.073 3.927 9 C -0.222 4.222 10 C -0.772 4.772 11 S 2.798 3.202 12 O -0.966 6.966 13 O -0.965 6.965 14 N -0.858 5.858 15 C 0.176 3.824 16 H 0.042 0.958 17 C -0.213 4.213 18 C -0.578 4.578 19 H 0.087 0.913 20 C -0.177 4.177 21 N -0.549 5.549 22 Si 0.777 3.223 23 H -0.203 1.203 24 H -0.211 1.211 25 H -0.194 1.194 26 C 0.005 3.995 27 H 0.107 0.893 28 H 0.117 0.883 29 H 0.111 0.889 30 H 0.203 0.797 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.095 0.905 34 H 0.257 0.743 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -6.131 3.983 -10.781 13.026 hybrid contribution 0.947 1.352 1.265 2.080 sum -5.183 5.335 -9.516 12.078 Atomic orbital electron populations 1.21004 0.85558 1.05832 1.04659 1.20426 0.99545 0.90213 1.00185 1.21545 0.89921 1.02006 0.88668 1.21131 0.93551 0.82714 1.19453 1.43573 1.01193 1.02791 0.97165 1.94483 1.70026 1.20062 1.53268 1.94461 0.96082 1.93862 1.54223 1.19490 0.98107 0.89653 0.85400 1.21879 0.87767 1.06243 1.06329 1.31111 1.07425 1.19114 1.19598 1.01380 0.73101 0.73343 0.72416 1.93563 1.59549 1.87349 1.56160 1.93541 1.62502 1.53557 1.86856 1.55455 1.18658 1.89903 1.21832 1.18265 0.90726 0.93656 0.79740 0.95751 1.22145 1.00264 0.97167 1.01699 1.21566 1.08622 1.33376 0.94262 0.91261 1.25559 0.95739 0.96131 1.00302 1.69961 1.20190 1.43630 1.21099 0.85717 0.79070 0.79032 0.78473 1.20274 1.21091 1.19379 1.21715 0.91395 1.01429 0.84977 0.89267 0.88284 0.88853 0.79709 0.86833 0.86315 0.90492 0.74327 0.94198 0.94808 0.90979 0.92521 0.80874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 10.01 71.24 0.71 -0.76 16 2 C -0.10 -2.19 5.88 -19.86 -0.12 -2.31 16 3 C 0.00 -0.06 9.21 22.27 0.21 0.15 16 4 C -0.08 -2.49 6.84 36.37 0.25 -2.24 16 5 N 0.04 1.18 4.45 -46.47 -0.21 0.97 16 6 O -0.16 -4.89 18.45 18.89 0.35 -4.54 16 7 O -0.18 -5.78 15.26 18.88 0.29 -5.49 16 8 C 0.08 2.41 5.87 -19.86 -0.12 2.30 16 9 C -0.17 -5.06 7.81 71.24 0.56 -4.51 16 10 C -0.69 -21.65 5.76 22.27 0.13 -21.52 16 11 S 2.71 93.33 4.84 -56.49 -0.27 93.06 16 12 O -0.98 -34.75 16.36 -128.00 -2.09 -36.85 16 13 O -0.97 -36.96 16.20 -128.00 -2.07 -39.03 16 14 N -1.10 -40.45 4.42 -172.52 -0.76 -41.22 16 15 C 0.28 12.61 2.76 44.24 0.12 12.73 16 16 H 0.02 1.17 7.87 -2.39 -0.02 1.15 16 17 C -0.15 -6.93 9.29 71.98 0.67 -6.26 16 18 C -0.54 -26.30 8.76 25.60 0.22 -26.07 16 19 H 0.07 3.25 7.81 -2.91 -0.02 3.23 16 20 C 0.02 1.19 5.30 84.66 0.45 1.64 16 21 N -0.91 -47.84 11.32 21.45 0.24 -47.59 16 22 Si 0.95 40.63 29.54 68.60 2.03 42.66 16 23 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 26 C 0.02 0.64 9.20 22.27 0.20 0.84 16 27 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.10 0.83 8.09 -2.39 -0.02 0.81 16 29 H 0.09 0.97 8.09 -2.39 -0.02 0.95 16 30 H 0.19 3.14 7.62 -2.91 -0.02 3.11 16 31 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 32 H 0.12 3.63 5.56 -2.39 -0.01 3.62 16 33 H 0.08 2.32 4.66 -2.39 -0.01 2.31 16 34 H 0.42 13.86 8.38 -96.74 -0.81 13.04 16 35 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.03 1.43 7.61 -2.39 -0.02 1.41 16 37 H 0.07 3.58 6.07 -2.39 -0.01 3.57 16 38 H 0.27 13.39 8.31 -92.71 -0.77 12.62 16 39 H 0.17 4.07 7.34 -2.91 -0.02 4.05 16 Total: -1.00 -62.31 340.69 1.08 -61.23 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.30 Total: 22.82 kcal Atomic # 6 Polarization: -49.31 SS G_CDS: 3.29 Total: -46.03 kcal Atomic # 7 Polarization: -87.11 SS G_CDS: -0.73 Total: -87.84 kcal Atomic # 8 Polarization: -82.37 SS G_CDS: -3.53 Total: -85.91 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Atomic # 16 Polarization: 93.33 SS G_CDS: -0.27 Total: 93.06 kcal Total: -62.31 1.08 -61.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351846371.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.660 kcal (2) G-P(sol) polarization free energy of solvation -62.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds