Wall clock time and date at job start Tue Mar 31 2020 16:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46931 * 2 1 4 4 H 1.09000 * 109.47296 * 306.58817 * 3 2 1 5 5 C 1.50705 * 109.46907 * 186.58892 * 3 2 1 6 6 H 1.08003 * 119.99454 * 239.99841 * 5 3 2 7 7 C 1.37871 * 120.00021 * 60.00124 * 5 3 2 8 8 N 1.31518 * 120.00116 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99925 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46909 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47226 * 119.99701 * 9 7 5 12 12 H 1.48496 * 109.47216 * 240.00093 * 9 7 5 13 13 N 1.46496 * 109.47029 * 66.58921 * 3 2 1 14 14 S 1.65600 * 120.00020 * 244.68078 * 13 3 2 15 15 O 1.42108 * 106.39821 * 50.02020 * 14 13 3 16 16 O 1.42102 * 106.40291 * 182.93869 * 14 13 3 17 17 C 1.76194 * 107.22088 * 296.47998 * 14 13 3 18 18 C 1.38255 * 120.00038 * 117.92832 * 17 14 13 19 19 C 1.38217 * 119.99943 * 179.97438 * 18 17 14 20 20 C 1.38254 * 119.99986 * 0.02562 * 19 18 17 21 21 C 1.50706 * 120.00026 * 180.02562 * 20 19 18 22 22 C 1.38217 * 120.00286 * 0.02562 * 20 19 18 23 23 C 1.38213 * 119.99977 * 297.66362 * 17 14 13 24 24 N 1.48024 * 119.99927 * 359.97438 * 23 17 14 25 25 O 1.21804 * 120.00022 * 186.41934 * 24 23 17 26 26 O 1.21801 * 119.99831 * 6.42546 * 24 23 17 27 27 H 1.08997 * 109.47374 * 174.22171 * 1 2 3 28 28 H 1.09008 * 109.47225 * 294.21777 * 1 2 3 29 29 H 1.09001 * 109.47354 * 54.22015 * 1 2 3 30 30 H 1.08999 * 109.47044 * 240.00341 * 2 1 3 31 31 H 1.08999 * 109.47233 * 119.99818 * 2 1 3 32 32 H 0.97000 * 119.99471 * 180.02562 * 8 7 5 33 33 H 0.97007 * 120.00029 * 64.40873 * 13 3 2 34 34 H 1.07998 * 120.00163 * 0.02562 * 18 17 14 35 35 H 1.07999 * 119.99808 * 180.02562 * 19 18 17 36 36 H 1.08998 * 109.47279 * 89.99783 * 21 20 19 37 37 H 1.09001 * 109.47056 * 210.00114 * 21 20 19 38 38 H 1.08998 * 109.46475 * 329.99399 * 21 20 19 39 39 H 1.07998 * 120.00380 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5835 1.9893 -0.8251 5 6 3.5381 1.4457 -0.1630 6 1 4.1635 1.8832 0.6011 7 6 4.1103 0.8901 -1.2877 8 7 3.3488 0.3570 -2.2180 9 14 5.9674 0.8947 -1.4901 10 1 6.5920 1.5487 -0.3122 11 1 6.4571 -0.5032 -1.5969 12 1 6.3293 1.6415 -2.7215 13 7 1.6853 2.0859 1.2675 14 16 0.6325 3.3641 1.2812 15 8 -0.5003 2.9589 0.5250 16 8 0.5502 3.8016 2.6307 17 6 1.3906 4.6739 0.3789 18 6 0.7953 5.1551 -0.7725 19 6 1.3897 6.1830 -1.4800 20 6 2.5798 6.7295 -1.0367 21 6 3.2276 7.8506 -1.8078 22 6 3.1754 6.2477 0.1137 23 6 2.5774 5.2240 0.8250 24 7 3.2114 4.7131 2.0612 25 8 4.1920 5.2723 2.5187 26 8 2.7525 3.7334 2.6209 27 1 -0.3634 -1.0224 -0.1035 28 1 -0.3634 0.4216 0.9373 29 1 -0.3634 0.6008 -0.8337 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.7515 -0.0342 -3.0090 33 1 2.0641 1.7605 2.0992 34 1 -0.1345 4.7285 -1.1186 35 1 0.9245 6.5591 -2.3792 36 1 2.8606 8.8071 -1.4356 37 1 4.3090 7.8018 -1.6804 38 1 2.9816 7.7536 -2.8653 39 1 4.1052 6.6744 0.4598 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358179496.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:34 Heat of formation + Delta-G solvation = -46.473678 kcal Electronic energy + Delta-G solvation = -27817.004949 eV Core-core repulsion = 23855.507168 eV Total energy + Delta-G solvation = -3961.497781 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.05364 -39.58005 -36.93073 -36.36744 -35.73045 -35.34258 -33.51503 -32.26807 -31.93640 -30.49656 -27.74414 -26.66506 -26.55426 -23.11733 -22.85009 -22.08852 -20.10807 -19.59541 -18.66230 -18.50145 -17.44538 -17.35305 -16.97033 -16.43495 -15.85574 -15.18903 -14.90015 -14.63519 -14.53789 -14.22859 -13.71797 -13.12901 -12.96699 -12.76345 -12.66120 -12.61351 -12.05136 -11.78913 -11.74186 -11.60338 -11.50992 -11.30911 -11.20309 -11.06117 -11.02105 -10.85649 -10.75374 -10.62610 -10.28691 -9.99839 -9.67301 -9.63777 -9.50272 -9.45323 -8.56474 -8.19996 -6.18518 -4.27402 -0.23031 0.59183 0.91128 1.44536 1.51267 3.01472 3.17036 3.26637 3.31525 3.59740 4.08353 4.26240 4.27860 4.30652 4.60518 4.62420 4.92994 5.10446 5.10995 5.20594 5.21251 5.37626 5.48923 5.60030 5.67998 5.91317 6.19372 6.26677 6.37850 6.40321 6.55566 6.69437 6.93226 7.12435 7.25951 7.59241 7.66893 7.74996 7.96972 8.02694 8.28848 8.78010 9.39987 10.85372 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.009959 B = 0.007198 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.969172 B = 3888.844169 C = 4861.743709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C 0.277 3.723 4 H 0.042 0.958 5 C -0.529 4.529 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.891 3.109 10 H -0.272 1.272 11 H -0.280 1.280 12 H -0.284 1.284 13 N -1.079 6.079 14 S 2.692 3.308 15 O -0.958 6.958 16 O -0.960 6.960 17 C -0.622 4.622 18 C -0.014 4.014 19 C -0.095 4.095 20 C -0.042 4.042 21 C -0.120 4.120 22 C -0.075 4.075 23 C 0.062 3.938 24 N 0.021 4.979 25 O -0.156 6.156 26 O -0.124 6.124 27 H 0.033 0.967 28 H 0.037 0.963 29 H 0.051 0.949 30 H 0.103 0.897 31 H 0.041 0.959 32 H 0.264 0.736 33 H 0.418 0.582 34 H 0.164 0.836 35 H 0.148 0.852 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.902 12.208 -0.806 12.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.167 4.167 3 C 0.173 3.827 4 H 0.059 0.941 5 C -0.568 4.568 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.522 5.522 9 Si 0.718 3.282 10 H -0.196 1.196 11 H -0.206 1.206 12 H -0.211 1.211 13 N -0.844 5.844 14 S 2.774 3.226 15 O -0.947 6.947 16 O -0.950 6.950 17 C -0.703 4.703 18 C -0.033 4.033 19 C -0.114 4.114 20 C -0.043 4.043 21 C -0.176 4.176 22 C -0.095 4.095 23 C -0.021 4.021 24 N 0.541 4.459 25 O -0.370 6.370 26 O -0.343 6.343 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.121 0.879 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.255 0.745 34 H 0.181 0.819 35 H 0.166 0.834 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.040 12.543 -1.395 13.251 hybrid contribution 2.060 -0.005 -0.061 2.060 sum -1.980 12.538 -1.456 12.776 Atomic orbital electron populations 1.21824 0.98359 0.99260 1.00894 1.21902 0.92571 0.99276 1.02984 1.18612 0.95103 0.90535 0.78459 0.94069 1.21487 0.91408 1.38850 1.05076 0.92027 1.24901 0.98202 0.94862 0.95672 1.69876 1.34728 1.38364 1.09250 0.86546 0.85472 0.78085 0.78056 1.19650 1.20608 1.21053 1.55481 1.65915 1.45528 1.17433 1.02214 0.73959 0.73411 0.73040 1.93582 1.46885 1.80866 1.73409 1.93589 1.86631 1.81880 1.32858 1.31394 1.05789 1.21452 1.11665 1.21097 0.99159 0.93182 0.89892 1.21582 0.94607 0.95359 0.99837 1.20146 0.94268 0.96398 0.93451 1.20935 1.01293 0.95463 0.99910 1.20967 1.00577 0.93976 0.93947 1.20426 0.94809 0.98971 0.87925 1.43562 1.00333 1.00364 1.01612 1.94488 1.15525 1.59671 1.67337 1.94492 1.64407 1.15398 1.60022 0.94824 0.94346 0.93037 0.87900 0.94054 0.92633 0.74499 0.81869 0.83397 0.89919 0.90365 0.90197 0.82574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 9.00 37.16 0.33 -2.66 16 2 C -0.13 -2.90 5.45 -26.73 -0.15 -3.05 16 3 C 0.28 6.50 2.23 -69.08 -0.15 6.34 16 4 H 0.04 1.02 7.78 -51.93 -0.40 0.62 16 5 C -0.53 -13.57 8.84 -34.44 -0.30 -13.87 16 6 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.63 16 8 N -0.88 -23.45 11.29 55.43 0.63 -22.82 16 9 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 10 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 N -1.08 -22.46 3.69 -5.88 -0.02 -22.48 16 14 S 2.69 52.89 4.74 -107.50 -0.51 52.38 16 15 O -0.96 -19.42 15.45 -57.17 -0.88 -20.30 16 16 O -0.96 -20.26 15.35 -67.24 -1.03 -21.29 16 17 C -0.62 -11.06 5.85 -39.58 -0.23 -11.29 16 18 C -0.01 -0.20 9.55 -39.58 -0.38 -0.58 16 19 C -0.10 -1.09 9.70 -39.58 -0.38 -1.47 16 20 C -0.04 -0.47 5.88 -104.62 -0.62 -1.09 16 21 C -0.12 -0.87 10.01 36.01 0.36 -0.51 16 22 C -0.08 -1.06 9.21 -39.58 -0.36 -1.42 16 23 C 0.06 1.10 6.81 -79.94 -0.54 0.55 16 24 N 0.02 0.41 4.45 33.96 0.15 0.56 16 25 O -0.16 -2.96 18.47 -29.46 -0.54 -3.50 16 26 O -0.12 -2.59 11.70 -37.29 -0.44 -3.03 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.04 0.75 7.49 -51.92 -0.39 0.37 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.10 2.58 5.92 -51.93 -0.31 2.27 16 31 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 33 H 0.42 8.28 7.71 -34.47 -0.27 8.02 16 34 H 0.16 2.10 7.34 -52.49 -0.39 1.72 16 35 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 38 H 0.08 0.48 8.09 -51.93 -0.42 0.06 16 39 H 0.16 1.87 7.63 -52.49 -0.40 1.47 16 LS Contribution 340.60 15.07 5.13 5.13 Total: -1.00 -31.36 340.60 -9.71 -41.07 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -4.65 Total: 6.24 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: -2.52 Total: -27.42 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.76 Total: -44.74 kcal Atomic # 8 Polarization: -45.23 SS G_CDS: -2.90 Total: -48.12 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 52.89 SS G_CDS: -0.51 Total: 52.38 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.36 -9.71 -41.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358179496.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.401 kcal (2) G-P(sol) polarization free energy of solvation -31.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds