Wall clock time and date at job start Tue Mar 31 2020 16:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46931 * 2 1 4 4 H 1.09000 * 109.47296 * 306.58817 * 3 2 1 5 5 C 1.50705 * 109.46907 * 186.58892 * 3 2 1 6 6 H 1.08003 * 119.99454 * 239.99841 * 5 3 2 7 7 C 1.37871 * 120.00021 * 60.00124 * 5 3 2 8 8 N 1.31518 * 120.00116 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99925 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46909 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47226 * 119.99701 * 9 7 5 12 12 H 1.48496 * 109.47216 * 240.00093 * 9 7 5 13 13 N 1.46496 * 109.47029 * 66.58921 * 3 2 1 14 14 S 1.65600 * 120.00020 * 244.68078 * 13 3 2 15 15 O 1.42108 * 106.39821 * 50.02020 * 14 13 3 16 16 O 1.42102 * 106.40291 * 182.93869 * 14 13 3 17 17 C 1.76194 * 107.22088 * 296.47998 * 14 13 3 18 18 C 1.38255 * 120.00038 * 117.92832 * 17 14 13 19 19 C 1.38217 * 119.99943 * 179.97438 * 18 17 14 20 20 C 1.38254 * 119.99986 * 0.02562 * 19 18 17 21 21 C 1.50706 * 120.00026 * 180.02562 * 20 19 18 22 22 C 1.38217 * 120.00286 * 0.02562 * 20 19 18 23 23 C 1.38213 * 119.99977 * 297.66362 * 17 14 13 24 24 N 1.48024 * 119.99927 * 359.97438 * 23 17 14 25 25 O 1.21804 * 120.00022 * 186.41934 * 24 23 17 26 26 O 1.21801 * 119.99831 * 6.42546 * 24 23 17 27 27 H 1.08997 * 109.47374 * 174.22171 * 1 2 3 28 28 H 1.09008 * 109.47225 * 294.21777 * 1 2 3 29 29 H 1.09001 * 109.47354 * 54.22015 * 1 2 3 30 30 H 1.08999 * 109.47044 * 240.00341 * 2 1 3 31 31 H 1.08999 * 109.47233 * 119.99818 * 2 1 3 32 32 H 0.97000 * 119.99471 * 180.02562 * 8 7 5 33 33 H 0.97007 * 120.00029 * 64.40873 * 13 3 2 34 34 H 1.07998 * 120.00163 * 0.02562 * 18 17 14 35 35 H 1.07999 * 119.99808 * 180.02562 * 19 18 17 36 36 H 1.08998 * 109.47279 * 89.99783 * 21 20 19 37 37 H 1.09001 * 109.47056 * 210.00114 * 21 20 19 38 38 H 1.08998 * 109.46475 * 329.99399 * 21 20 19 39 39 H 1.07998 * 120.00380 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5835 1.9893 -0.8251 5 6 3.5381 1.4457 -0.1630 6 1 4.1635 1.8832 0.6011 7 6 4.1103 0.8901 -1.2877 8 7 3.3488 0.3570 -2.2180 9 14 5.9674 0.8947 -1.4901 10 1 6.5920 1.5487 -0.3122 11 1 6.4571 -0.5032 -1.5969 12 1 6.3293 1.6415 -2.7215 13 7 1.6853 2.0859 1.2675 14 16 0.6325 3.3641 1.2812 15 8 -0.5003 2.9589 0.5250 16 8 0.5502 3.8016 2.6307 17 6 1.3906 4.6739 0.3789 18 6 0.7953 5.1551 -0.7725 19 6 1.3897 6.1830 -1.4800 20 6 2.5798 6.7295 -1.0367 21 6 3.2276 7.8506 -1.8078 22 6 3.1754 6.2477 0.1137 23 6 2.5774 5.2240 0.8250 24 7 3.2114 4.7131 2.0612 25 8 4.1920 5.2723 2.5187 26 8 2.7525 3.7334 2.6209 27 1 -0.3634 -1.0224 -0.1035 28 1 -0.3634 0.4216 0.9373 29 1 -0.3634 0.6008 -0.8337 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.7515 -0.0342 -3.0090 33 1 2.0641 1.7605 2.0992 34 1 -0.1345 4.7285 -1.1186 35 1 0.9245 6.5591 -2.3792 36 1 2.8606 8.8071 -1.4356 37 1 4.3090 7.8018 -1.6804 38 1 2.9816 7.7536 -2.8653 39 1 4.1052 6.6744 0.4598 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358179496.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:33 Heat of formation + Delta-G solvation = -66.065249 kcal Electronic energy + Delta-G solvation = -27817.854503 eV Core-core repulsion = 23855.507168 eV Total energy + Delta-G solvation = -3962.347335 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.47450 -40.67084 -38.49817 -37.98115 -37.41007 -36.93651 -34.50302 -34.18900 -33.07947 -32.21750 -28.64272 -28.51222 -27.86550 -24.90528 -24.05802 -23.26656 -21.90359 -21.00202 -20.09471 -19.95915 -18.99167 -18.80089 -18.48866 -18.06109 -17.31380 -16.85455 -16.20787 -15.92161 -15.74000 -15.43620 -15.06739 -14.85333 -14.70130 -13.73606 -13.60985 -13.54328 -13.45522 -13.36032 -13.24486 -13.17769 -13.11459 -12.93231 -12.80352 -12.69542 -12.62648 -12.40005 -12.33081 -12.11586 -12.03201 -11.80805 -11.50254 -11.33118 -10.73778 -10.54714 -10.48976 -9.95905 -8.16119 -6.30526 -1.53026 -0.63527 -0.45291 0.14010 0.21436 1.33947 1.39536 1.48703 1.89934 2.08894 2.39708 2.64472 3.04463 3.10203 3.34470 3.56673 3.69090 3.78121 3.97108 4.20989 4.37470 4.45827 4.58000 4.62634 4.64430 4.69473 4.77002 4.90662 4.95879 5.08585 5.13278 5.14823 5.37754 5.41462 5.47916 5.63488 5.79710 6.05178 6.13431 6.30550 6.53097 6.79750 7.38897 8.86946 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.009959 B = 0.007198 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.969172 B = 3888.844169 C = 4861.743709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.126 4.126 3 C 0.286 3.714 4 H 0.026 0.974 5 C -0.539 4.539 6 H 0.048 0.952 7 C 0.029 3.971 8 N -0.903 5.903 9 Si 0.944 3.056 10 H -0.278 1.278 11 H -0.277 1.277 12 H -0.276 1.276 13 N -1.083 6.083 14 S 2.704 3.296 15 O -0.972 6.972 16 O -0.981 6.981 17 C -0.651 4.651 18 C -0.024 4.024 19 C -0.081 4.081 20 C -0.027 4.027 21 C -0.119 4.119 22 C -0.078 4.078 23 C 0.029 3.971 24 N 0.018 4.982 25 O -0.142 6.142 26 O -0.175 6.175 27 H 0.055 0.945 28 H 0.041 0.959 29 H 0.042 0.958 30 H 0.081 0.919 31 H 0.042 0.958 32 H 0.266 0.734 33 H 0.419 0.581 34 H 0.174 0.826 35 H 0.198 0.802 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.361 14.494 -2.953 14.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.181 3.819 4 H 0.044 0.956 5 C -0.579 4.579 6 H 0.066 0.934 7 C -0.172 4.172 8 N -0.542 5.542 9 Si 0.770 3.230 10 H -0.203 1.203 11 H -0.202 1.202 12 H -0.201 1.201 13 N -0.846 5.846 14 S 2.790 3.210 15 O -0.962 6.962 16 O -0.972 6.972 17 C -0.737 4.737 18 C -0.043 4.043 19 C -0.099 4.099 20 C -0.028 4.028 21 C -0.175 4.175 22 C -0.097 4.097 23 C -0.054 4.054 24 N 0.534 4.466 25 O -0.363 6.363 26 O -0.383 6.383 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.255 0.745 34 H 0.192 0.808 35 H 0.215 0.785 36 H 0.126 0.874 37 H 0.103 0.897 38 H 0.120 0.880 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -3.572 14.719 -3.493 15.544 hybrid contribution 1.936 -0.497 0.498 2.060 sum -1.637 14.222 -2.996 14.626 Atomic orbital electron populations 1.21737 0.96602 1.00549 1.00722 1.21811 0.94161 0.98713 1.01914 1.18335 0.93882 0.90749 0.78982 0.95637 1.21633 0.92538 1.38807 1.04894 0.93372 1.25489 1.01564 0.94676 0.95504 1.69963 1.35981 1.38702 1.09534 0.85725 0.81350 0.78097 0.77801 1.20346 1.20226 1.20130 1.55354 1.66000 1.46682 1.16569 1.01478 0.73477 0.73326 0.72674 1.93550 1.47763 1.81459 1.73439 1.93552 1.86953 1.82132 1.34530 1.30971 1.07000 1.22118 1.13589 1.21493 0.99677 0.94102 0.89037 1.22186 0.94085 0.93270 1.00368 1.20768 0.93706 0.96350 0.92017 1.21118 1.01439 0.94459 1.00448 1.21463 1.01180 0.92744 0.94344 1.20696 0.95757 1.01080 0.87840 1.43940 1.00237 1.00109 1.02311 1.94425 1.15390 1.59018 1.67494 1.94485 1.65389 1.16863 1.61532 0.92627 0.93983 0.93843 0.90035 0.93932 0.92411 0.74454 0.80825 0.78497 0.87431 0.89674 0.88026 0.80704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.72 9.00 71.98 0.65 -5.07 16 2 C -0.13 -5.86 5.45 30.60 0.17 -5.70 16 3 C 0.29 13.78 2.23 44.25 0.10 13.88 16 4 H 0.03 1.31 7.78 -2.39 -0.02 1.29 16 5 C -0.54 -28.28 8.84 25.60 0.23 -28.06 16 6 H 0.05 2.61 7.81 -2.91 -0.02 2.58 16 7 C 0.03 1.50 5.29 84.65 0.45 1.94 16 8 N -0.90 -48.08 11.29 21.45 0.24 -47.84 16 9 Si 0.94 41.92 29.54 68.60 2.03 43.94 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 12 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 13 N -1.08 -47.12 3.69 -172.51 -0.64 -47.76 16 14 S 2.70 110.19 4.74 -56.49 -0.27 109.92 16 15 O -0.97 -40.38 15.45 -128.00 -1.98 -42.36 16 16 O -0.98 -43.47 15.35 -118.37 -1.82 -45.29 16 17 C -0.65 -23.28 5.85 22.27 0.13 -23.15 16 18 C -0.02 -0.65 9.55 22.27 0.21 -0.43 16 19 C -0.08 -1.52 9.70 22.27 0.22 -1.31 16 20 C -0.03 -0.51 5.88 -19.86 -0.12 -0.63 16 21 C -0.12 -1.07 10.01 71.24 0.71 -0.36 16 22 C -0.08 -2.03 9.21 22.27 0.21 -1.82 16 23 C 0.03 1.05 6.81 36.37 0.25 1.29 16 24 N 0.02 0.73 4.45 -46.46 -0.21 0.52 16 25 O -0.14 -5.45 18.47 18.88 0.35 -5.10 16 26 O -0.18 -7.71 11.70 26.37 0.31 -7.41 16 27 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.04 1.67 7.49 -2.38 -0.02 1.65 16 29 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.08 4.17 5.92 -2.39 -0.01 4.15 16 31 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 33 H 0.42 17.71 7.71 -96.74 -0.75 16.96 16 34 H 0.17 4.26 7.34 -2.91 -0.02 4.24 16 35 H 0.20 1.75 8.06 -2.91 -0.02 1.72 16 36 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.08 0.73 8.09 -2.39 -0.02 0.71 16 38 H 0.10 0.58 8.09 -2.39 -0.02 0.56 16 39 H 0.18 3.75 7.63 -2.91 -0.02 3.73 16 Total: -1.00 -70.11 340.60 1.56 -68.55 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.35 Total: 22.22 kcal Atomic # 6 Polarization: -52.60 SS G_CDS: 3.20 Total: -49.40 kcal Atomic # 7 Polarization: -94.47 SS G_CDS: -0.60 Total: -95.07 kcal Atomic # 8 Polarization: -97.01 SS G_CDS: -3.14 Total: -100.15 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 16 Polarization: 110.19 SS G_CDS: -0.27 Total: 109.92 kcal Total: -70.11 1.56 -68.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358179496.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.482 kcal (2) G-P(sol) polarization free energy of solvation -70.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds