Wall clock time and date at job start Tue Mar 31 2020 15:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38254 * 120.00492 * 2 1 4 4 C 1.50708 * 119.99993 * 0.02562 * 3 2 1 5 5 N 1.46496 * 109.47057 * 79.72214 * 4 3 2 6 6 S 1.65603 * 119.99870 * 165.27964 * 5 4 3 7 7 O 1.42100 * 104.27844 * 180.79985 * 6 5 4 8 8 O 1.42106 * 104.27472 * 308.65234 * 6 5 4 9 9 C 1.81397 * 104.45050 * 64.72484 * 6 5 4 10 10 C 1.52993 * 109.47210 * 180.02562 * 9 6 5 11 11 C 1.50701 * 109.47281 * 180.02562 * 10 9 6 12 12 H 1.08000 * 119.99842 * 359.97438 * 11 10 9 13 13 C 1.37882 * 120.00137 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99841 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99985 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47214 * 59.99641 * 15 13 11 17 17 H 1.48499 * 109.47045 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47072 * 299.99839 * 15 13 11 19 19 C 1.38210 * 120.00187 * 179.72575 * 3 2 1 20 20 C 1.38251 * 120.00236 * 0.28038 * 19 3 2 21 21 C 1.38212 * 119.99910 * 359.97284 * 20 19 3 22 22 C 1.38218 * 119.99897 * 180.19113 * 2 1 3 23 23 N 1.48015 * 120.00088 * 0.04227 * 22 2 1 24 24 O 1.21802 * 120.00621 * 186.67308 * 23 22 2 25 25 O 1.21803 * 119.99686 * 6.67358 * 23 22 2 26 26 H 1.08994 * 109.47273 * 96.80586 * 1 2 3 27 27 H 1.09000 * 109.47195 * 216.81294 * 1 2 3 28 28 H 1.09004 * 109.46693 * 336.80773 * 1 2 3 29 29 H 1.08999 * 109.46576 * 319.72951 * 4 3 2 30 30 H 1.08996 * 109.47212 * 199.72539 * 4 3 2 31 31 H 0.96997 * 120.00337 * 345.00346 * 5 4 3 32 32 H 1.09000 * 109.47113 * 300.00265 * 9 6 5 33 33 H 1.09004 * 109.46991 * 59.99972 * 9 6 5 34 34 H 1.09000 * 109.47012 * 299.99976 * 10 9 6 35 35 H 1.09004 * 109.47453 * 59.99904 * 10 9 6 36 36 H 0.96996 * 119.99500 * 180.02562 * 14 13 11 37 37 H 1.08004 * 119.99937 * 180.25181 * 19 3 2 38 38 H 1.08006 * 120.00560 * 179.97438 * 20 19 3 39 39 H 1.08007 * 119.99992 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 1.4449 2.5025 0.0006 5 7 0.9879 2.8019 1.3598 6 16 0.4576 4.3243 1.7386 7 8 0.1219 4.2457 3.1171 8 8 1.4976 5.1803 1.2856 9 6 -1.0346 4.5475 0.7316 10 6 -1.6249 5.9341 0.9950 11 6 -2.8649 6.1193 0.1589 12 1 -3.1984 5.3273 -0.4953 13 6 -3.5738 7.2999 0.2291 14 7 -3.1681 8.2641 1.0261 15 14 -5.1113 7.5291 -0.8067 16 1 -6.1092 6.4895 -0.4483 17 1 -5.6842 8.8751 -0.5511 18 1 -4.7623 7.4052 -2.2449 19 6 3.5804 1.1972 0.0057 20 6 4.2717 -0.0001 0.0056 21 6 3.5806 -1.1970 0.0003 22 6 2.1980 -1.1970 -0.0040 23 7 1.4580 -2.4789 -0.0092 24 8 2.0606 -3.5306 0.1098 25 8 0.2462 -2.4819 -0.1326 26 1 -0.3633 -0.1218 -1.0204 27 1 -0.3633 -0.8227 0.6158 28 1 -0.3633 0.9447 0.4047 29 1 0.5840 2.4252 -0.6634 30 1 2.1009 3.3008 -0.3463 31 1 0.9921 2.1074 2.0370 32 1 -0.7776 4.4569 -0.3238 33 1 -1.7674 3.7844 0.9939 34 1 -1.8818 6.0251 2.0504 35 1 -0.8919 6.6970 0.7324 36 1 -3.6670 9.0944 1.0757 37 1 4.1205 2.1325 0.0098 38 1 5.3517 -0.0002 0.0097 39 1 4.1206 -2.1324 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360141845.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:40 Heat of formation + Delta-G solvation = -82.479497 kcal Electronic energy + Delta-G solvation = -25374.704123 eV Core-core repulsion = 21411.645013 eV Total energy + Delta-G solvation = -3963.059110 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.32010 -40.89974 -38.16802 -37.77259 -37.03791 -36.62792 -35.86944 -34.02008 -33.10194 -32.72862 -29.12241 -27.56872 -27.18172 -26.59975 -23.58701 -23.30793 -22.36944 -20.40916 -19.88707 -19.68116 -19.06495 -18.66184 -18.23159 -17.50528 -17.25897 -17.02664 -16.84452 -16.52047 -16.08833 -15.28069 -15.07145 -14.78322 -14.56104 -14.40792 -14.08270 -13.77290 -13.70353 -13.42252 -13.24716 -13.19180 -13.14511 -13.09070 -12.88977 -12.77695 -12.52430 -12.30616 -12.25765 -12.18990 -12.15347 -11.72750 -11.65212 -11.20962 -10.62136 -10.58042 -10.44789 -10.07952 -8.24599 -6.38038 -1.21745 -0.72825 -0.10897 0.28648 0.39691 1.42647 1.45242 1.53275 1.81601 2.30124 2.39373 2.80829 3.09348 3.13805 3.31224 3.36783 3.63755 3.74720 3.93772 3.97589 4.03935 4.16592 4.29399 4.39363 4.52754 4.62393 4.64420 4.74884 4.81377 4.86084 5.02734 5.05260 5.14475 5.27939 5.30962 5.32114 5.56134 5.70611 5.99141 6.08519 6.50497 6.76232 7.32322 8.87339 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.017271 B = 0.002858 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.852770 B = 9795.737093 C =10798.889319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.003 4.003 3 C -0.104 4.104 4 C 0.145 3.855 5 N -1.108 6.108 6 S 2.623 3.377 7 O -1.000 7.000 8 O -0.991 6.991 9 C -0.590 4.590 10 C 0.019 3.981 11 C -0.538 4.538 12 H 0.078 0.922 13 C -0.003 4.003 14 N -0.935 5.935 15 Si 0.971 3.029 16 H -0.265 1.265 17 H -0.287 1.287 18 H -0.262 1.262 19 C -0.037 4.037 20 C -0.113 4.113 21 C -0.049 4.049 22 C -0.073 4.073 23 N 0.034 4.966 24 O -0.192 6.192 25 O -0.175 6.175 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.107 0.893 31 H 0.423 0.577 32 H 0.149 0.851 33 H 0.144 0.856 34 H 0.004 0.996 35 H 0.009 0.991 36 H 0.267 0.733 37 H 0.171 0.829 38 H 0.184 0.816 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.408 -18.600 -5.286 24.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.005 4.005 3 C -0.106 4.106 4 C 0.020 3.980 5 N -0.869 5.869 6 S 2.720 3.280 7 O -0.990 6.990 8 O -0.981 6.981 9 C -0.722 4.722 10 C -0.020 4.020 11 C -0.577 4.577 12 H 0.096 0.904 13 C -0.202 4.202 14 N -0.574 5.574 15 Si 0.794 3.206 16 H -0.189 1.189 17 H -0.212 1.212 18 H -0.187 1.187 19 C -0.056 4.056 20 C -0.132 4.132 21 C -0.068 4.068 22 C -0.156 4.156 23 N 0.545 4.455 24 O -0.402 6.402 25 O -0.388 6.388 26 H 0.116 0.884 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.259 0.741 32 H 0.167 0.833 33 H 0.162 0.838 34 H 0.023 0.977 35 H 0.027 0.973 36 H 0.075 0.925 37 H 0.188 0.812 38 H 0.201 0.799 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 16.165 -17.126 -4.736 24.022 hybrid contribution -1.535 -0.546 -0.279 1.653 sum 14.630 -17.672 -5.014 23.484 Atomic orbital electron populations 1.21488 0.88435 1.05333 1.05145 1.19866 0.98349 0.90095 0.92168 1.19713 0.94506 0.92739 1.03679 1.20513 1.00071 0.94522 0.82927 1.55452 1.81472 1.30503 1.19437 1.04417 0.76426 0.72964 0.74197 1.93516 1.86071 1.85926 1.33503 1.93506 1.54796 1.66502 1.83272 1.30357 1.18665 1.07071 1.16085 1.18816 0.96801 0.89439 0.96918 1.21519 1.09773 1.01288 1.25143 0.90433 1.26084 1.01581 0.95676 0.96837 1.70089 1.41571 1.06447 1.39331 0.85413 0.78603 0.77348 0.79194 1.18933 1.21238 1.18659 1.22059 0.92906 1.00986 0.89614 1.21599 1.02761 0.89408 0.99386 1.21413 0.90007 1.02415 0.92947 1.21154 0.93316 0.82138 1.19032 1.43904 1.01127 1.03381 0.97051 1.94513 1.70046 1.21127 1.54490 1.94490 0.96929 1.94091 1.53266 0.88407 0.89305 0.88947 0.87978 0.87484 0.74093 0.83322 0.83779 0.97738 0.97262 0.92466 0.81162 0.79858 0.81822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 8.09 71.23 0.58 -1.77 16 2 C 0.00 -0.04 5.88 -19.87 -0.12 -0.16 16 3 C -0.10 -1.33 5.28 -19.86 -0.10 -1.44 16 4 C 0.14 2.07 5.36 85.64 0.46 2.53 16 5 N -1.11 -21.32 5.26 -190.79 -1.00 -22.32 16 6 S 2.62 81.04 5.46 -56.49 -0.31 80.73 16 7 O -1.00 -38.61 18.08 -127.65 -2.31 -40.92 16 8 O -0.99 -36.06 17.51 -127.65 -2.24 -38.30 16 9 C -0.59 -19.61 6.00 71.98 0.43 -19.18 16 10 C 0.02 0.95 4.98 29.85 0.15 1.09 16 11 C -0.54 -28.59 9.11 25.60 0.23 -28.36 16 12 H 0.08 3.75 7.74 -2.91 -0.02 3.73 16 13 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 14 N -0.93 -55.71 13.29 21.45 0.28 -55.43 16 15 Si 0.97 42.18 29.54 68.60 2.03 44.21 16 16 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 17 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 18 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 19 C -0.04 -0.32 9.67 22.27 0.22 -0.11 16 20 C -0.11 -0.77 10.05 22.27 0.22 -0.55 16 21 C -0.05 -0.56 9.56 22.27 0.21 -0.35 16 22 C -0.07 -1.26 6.83 36.38 0.25 -1.02 16 23 N 0.03 0.78 4.45 -46.46 -0.21 0.57 16 24 O -0.19 -4.70 18.47 18.88 0.35 -4.35 16 25 O -0.18 -4.33 15.37 18.88 0.29 -4.04 16 26 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.09 1.64 5.89 -2.39 -0.01 1.62 16 28 H 0.09 1.27 6.04 -2.38 -0.01 1.25 16 29 H 0.10 1.13 7.18 -2.39 -0.02 1.11 16 30 H 0.11 1.41 7.57 -2.39 -0.02 1.39 16 31 H 0.42 7.06 8.61 -96.75 -0.83 6.22 16 32 H 0.15 4.02 8.14 -2.39 -0.02 4.00 16 33 H 0.14 4.15 8.14 -2.39 -0.02 4.13 16 34 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 37 H 0.17 0.79 8.04 -2.91 -0.02 0.76 16 38 H 0.18 0.01 8.06 -2.91 -0.02 -0.02 16 39 H 0.16 1.48 7.63 -2.91 -0.02 1.46 16 Total: -1.00 -79.07 350.76 0.14 -78.93 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 0.27 Total: 9.95 kcal Atomic # 6 Polarization: -52.01 SS G_CDS: 2.99 Total: -49.02 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -0.93 Total: -77.18 kcal Atomic # 8 Polarization: -83.70 SS G_CDS: -3.90 Total: -87.61 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 16 Polarization: 81.04 SS G_CDS: -0.31 Total: 80.73 kcal Total: -79.07 0.14 -78.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360141845.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.554 kcal (2) G-P(sol) polarization free energy of solvation -79.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds